Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Forward (+)

54119310 .. 54123243

Gene Structure 3934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCAGCAATCTCTGAGCGAATCGAGCTCGCCAAGATCTGCAGCTCGCGCGACTGGTCCAAGGAAATCCGAGTCCTCGACTCGCTCCTAAACCAATCCTCTTCAATCCAGGGCATCTGCAACAGAGCCTTCTGTTACAGCCAATTGGAGCTGCACAAGCATGTGGTCAAGGATTGTGATAGGGCGCTTCAGCTCGACCCCGCGCTGCTTCAAGCTTACATCCTCAAAGGGGTCATTTGGAAAATGAACGGAATATGGAAACTAGGAATTGTTCCAAGGCATATTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

96

Amino Acids

10.95

Weight (kDa)

9.05

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	49, 51, 203
AciI	CCGC	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	105, 212
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	5 cut(s)	28, 45, 151, 193, 215
AluI	AGCT	5 cut(s)	28, 45, 151, 193, 215
Alw21I	GWGCWC	1 cut(s)	30
ApeKI	GCWGC	4 cut(s)	5, 42, 151, 205
AspLEI	GCGC	3 cut(s)	51, 187, 205
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	17, 54, 138, 192
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	2 cut(s)	263, 289
BfmI	CTRYAG	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	188
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	4 cut(s)	6, 43, 152, 206
BlsI	GCNGC	4 cut(s)	7, 44, 153, 207
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	60, 109, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	60, 109, 275
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	4 cut(s)	17, 54, 138, 192
BsgI	GTGCAG	1 cut(s)	137
Bsh1236I	CGCG	3 cut(s)	49, 51, 203
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	3 cut(s)	49, 51, 203
BspMAI	CTGCAG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	60, 109, 275
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	2 cut(s)	60, 275
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	30, 47
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	3 cut(s)	49, 51, 203
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	3 cut(s)	51, 187, 205
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 48, 157
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	3 cut(s)	49, 51, 203
BstV1I	GCAGC	4 cut(s)	17, 54, 138, 192
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	30, 47
CfoI	GCGC	3 cut(s)	51, 187, 205
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	7 cut(s)	28, 45, 128, 141, 151, 193, 215
CviKI_1	RGCY	7 cut(s)	28, 45, 128, 141, 151, 193, 215
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	60, 275
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	60, 275
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	2 cut(s)	60, 275
FaeI	CATG	1 cut(s)	164
FaiI	YATR	3 cut(s)	162, 256, 282
FatI	CATG	1 cut(s)	160
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	6, 43, 152, 206
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	4 cut(s)	6, 43, 152, 206
FspBI	CTAG	2 cut(s)	263, 289
GlaI	GCGC	3 cut(s)	50, 186, 204
GluI	GCNGC	4 cut(s)	6, 43, 152, 206
HaeII	RGCGCY	1 cut(s)	188
HhaI	GCGC	3 cut(s)	51, 187, 205
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	3 cut(s)	49, 185, 203
HinP1I	GCGC	3 cut(s)	49, 185, 203
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	3 cut(s)	21, 72, 80
Hpy188I	TCNGA	2 cut(s)	16, 71
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	42, 120, 154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 48, 157
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	3 cut(s)	49, 185, 203
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	90, 148
LpnPI	CCDG	3 cut(s)	40, 95, 122
Lsp1109I	GCAGC	4 cut(s)	17, 54, 138, 192
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	263, 289
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	93
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	143, 267
MlyI	GAGTC	2 cut(s)	74, 81
MnlI	CCTC	3 cut(s)	86, 109, 233
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	3 cut(s)	49, 51, 203
MwoI	GCNNNNNNNGC	3 cut(s)	25, 48, 157
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	164
NspI	RCATGY	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	21
PkrI	GCNGC	4 cut(s)	7, 44, 153, 207
PleI	GAGTC	2 cut(s)	74, 80
PpsI	GAGTC	2 cut(s)	74, 80
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	4 cut(s)	6, 43, 152, 206
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	74, 81
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	30, 47, 153, 195, 217, 290
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	143, 267
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	2 cut(s)	263, 289
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	60, 275
TaqI	TCGA	3 cut(s)	24, 78, 195
TasI	AATT	2 cut(s)	143, 267
TfiI	GAWTC	1 cut(s)	21
TseI	GCWGC	4 cut(s)	5, 42, 151, 205
TspDTI	ATGAA	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	57
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	2 cut(s)	263, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.