Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Reverse (-)

18858640 .. 18869366

Gene Structure 10727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG204100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2835 bp

ATGGCAGCAATCTCCGAGCGAGTCGAGCTCGCCAAGCTCTGCAGCTCGCGCGACTGGTCCAAGGCAATCCGAGTCCTCGACTCGCTCCTCAACCAGTCCTCTTCAATCCAGGACATCTGCAACAGAGCCTTCTGTTACAGCCAATTGGAGCTGCACAAGCATGTGGTCAAGGATTGTGATAGGGCGCTTCAGCTCGACCCCGCGCTGCTTCAAGCTTACATCCTCAAAGGTCGTGCATTTTCTGCTCTTGGAAGGAAAGAGGATGCTGTTTTGGTTTGGGAGCAAGGGTATGAGCATGCATTGCGTCAGTCTGCAGATCTGCAGCAATTGCTAGAGCTGAAAGAGCTCTTATCAATTGCAGAACGGGATAAAAGTGGACACGAAAACCATGTAACAGAGGCGGTGTCGGCTACGCTTGTATCTGAATCTACACCACATGCGAATGGGATATCAAGTGAAACTTGTACGGATCAGAGTAATTTGAGTGATCAATCCCAATTACACAGTGAATCAACCATTTCCTCTGAGGTTCATAGCAAGTCTAATGATAACATATGCAATGGAGAAGTTGATAAGGCCAGAGGAAAGAAGAAGCTTGATAGCCAAATGAATGGAAACCATGATAGCTTCAGTGAATCACCCATTACATCTGAGGTTCAGAGCAAGTCCAATGAGATCAGATGCAATGGTATAGGTGGTAAAGCCAGAGGGAAGAAGAAGTTTGATAGCCAGATGAATGAAAATCATGATATTGAGGGAAAATTGAGTAATGACTCTGAAGCATGTAATGACTTAAGTGATAGATGCAACAAGTTGCCTATGATTTGTAGTAAATCAAGTGATTTAGCTGAAACTCCCCCCACACCGCCCAAGTTAAGTAATAAATCTGACATACGTGACGAGTCCAAGAGAAATAAAAAGTTCTGCTTTACTAGAGTTTCAAAGACCAAGTCGATAAGTGTGGATTTTCGACTGTCAAGGGGTATAGCGGAGGTTAATGAAGGGAAATATCCTCATGCCATATCTATATTTGACCAGATATTGAAAGAGGATCCTAATTATCCAGAGGCACTAATAGGAAGAGGAACAGCATATGCTTTCCAACGAGAACTATTGGCTGCAATAGCTGATTTTACAAAGGCCATGGAAACAAATCCATCAGCTGCTGAGGCATGGAAACGGAGAGGGCAGGCACGAGCTGCCCTTGGAGAATTTACCGAGGCCATTGAAGATTTGTCGAAGGCATTAGAGTTTGAACCAAATTCGGCAGATATTCTTCATGAAAGGGGTATTGCCAATTTCAAGTTCAAGGATTTCTATACTGCTGTTGAAGACCTATCTGCCTGCGTGAAACTTGATAAGGATAACACATCTGCATACACATATTTGGGTTTGGCATTATCTTCTATTGGTGAATATAAAAGAGCTGAGGAGGCGCATTTAAAAGCAATTCAGCTGGATCGGAATTTCCTCGAGGCATGGGTGCAGCTAACCCAGTTCTATCAAGATATGGCAAACCCAAACAAGGCTTTCGAGTGTCTTCAGCAAGCTCTACAAATTGATGGGAGGTTTGCCAAAGCATATCATTTGCGAGGTCTACTGTTGCATGGGATGGGAGAACATAGTAAAGCTATTAAAGAGCTGTCAACTGGGTTGAGTATTGAGAGTGCAAATATTGAGTGTCTGTATTTGCGGGCATCTTGCTACCATGCGATAGGAGAATTTAAACCAGCGGTCAAGGACTATGATGCCGTGCTGGATTTGGAACTAGACTCAAGGGAGAAGTTTGTGCTACAATGCCTGGCTTTTTATCAGAAAGAGATTGCTCTGTACACGGCATCAAAACTCAACAGTGAGTTTGTCTGGTTTGATATTGATGGAGATATTGATTCTCTTTTCAAGGAGTACTGGTGCAAAAGATTGCACCCCAAGAATGTTTGCGAAAAGGTTTACCGGCAACCCCCCTTGCGTGAATCTTTAAAGAAGAGCAAGCTTAAAAAGCTAGATTTTTCAGTCACAAAGCAGAGTACTGCTCTTCTGCAAGCTGCTGATTGCATTGGGAAGAAAATCCAATATGATTGCCCTGGTTTCTTACCAAATAGGCGACAGCATCGTATGGCAGGATTGGCTGCTATTGAAGTTGCACAGAAGGTTTCAAAAGCGTGGCGTTCCTTTCAAGCGGAATGGAAATACTCAATTAAAAGCACATCCAAGAATGGCAAGAGACCGAGGAGAAGGGAAAGAATCAATTTGCCAAGCCAGAATAGAGGTGGTGCTGGGTGTAGCACTAGCACCTCCTCAGACTCAACTTCATATGGCATTACGCAGTCAAAATCAACTGGCCGTTTTATGATGTCATGGCATGATGTTTATTCAGTGGCTGTCAAATGGCGGCAGATTTCTGAACCTTGTGATCCTGTTGTGTGGATTAACAAACTAAGTGAAGAGTTTAATGCTGGATTTGGGTCTCATACACCAATTATCCTTGGACAAGCAAAAGTTGTTCGGTATTTCCCAAATTTTGAAAGGACATTTGATGTTGCAAAGACAATCATGAAGGAAAGAAAATATGTGCATAACAAGTTAGATGGCCTGATTGATCTATCTGGGAAATTGCAAGATGTTATGCATGCAAAATCCTGCGCTGATCTGTACAGGGCTGTTGGTGAGGACTTCTGGTTGGCTACTTGGTGCAATAGTACTGCCTTTGAGGGGAAGTATCTTGAAGGGACAAGGATTACCCTCGTAAAATTGTATAGCTCTATAACTCTTCGTCTTGCAACTTTCCCTTCCTTTATTCCATTTCTTTTGTTTATATTTTATTCTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

944

Amino Acids

106.36

Weight (kDa)

8.31

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	361 - 422	1.1e-06	Tetratricopeptide repeat
TPR_1	PF00515	389 - 421	7.7e-08	Tetratricopeptide repeat
TPR_2	PF07719	389 - 421	5.1e-06	Tetratricopeptide repeat
TPR_11	PF13414	396 - 435	6e-08	TPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1472
AccI	GTMKAC	1 cut(s)	1597
AccII	CGCG	3 cut(s)	49, 51, 203
AciI	CCGC	8 cut(s)	201, 401, 866, 989, 1693, 1733, 2180, 2392
AclWI	GGATC	5 cut(s)	477, 1046, 1059, 1467, 2408
AcoI	YGGCCR	1 cut(s)	2341
AcsI	RAATTY	5 cut(s)	1211, 1261, 1465, 1721, 2518
AcuI	CTGAAG	4 cut(s)	173, 613, 798, 1526
AfaI	GTAC	6 cut(s)	466, 1832, 1907, 2029, 2654, 2701
AfiI	CCNNNNNNNGG	2 cut(s)	1525, 2712
AflII	CTTAAG	1 cut(s)	793
AjnI	CCWGG	3 cut(s)	108, 1800, 2083
AjuI	GAANNNNNNNTTGG	2 cut(s)	1289, 1321
Alw21I	GWGCWC	2 cut(s)	30, 348
Alw26I	GTCTC	2 cut(s)	2218, 2472
AlwI	GGATC	5 cut(s)	477, 1046, 1059, 1467, 2408
AlwNI	CAGNNNCTG	2 cut(s)	1166, 2381
Ama87I	CYCGRG	1 cut(s)	1472
AoxI	GGCC	5 cut(s)	576, 1140, 1221, 2341, 2590
ApoI	RAATTY	5 cut(s)	1211, 1261, 1465, 1721, 2518
ArsI	GACNNNNNNTTYG	2 cut(s)	935, 967
AspLEI	GCGC	5 cut(s)	51, 187, 205, 1438, 2645
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	630, 1424, 2678
AvaI	CYCGRG	1 cut(s)	1472
AvaII	GGWCC	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BamHI	GGATCC	1 cut(s)	1051
BanII	GRGCYC	2 cut(s)	30, 348
BauI	CACGAG	1 cut(s)	1194
BbsI	GAAGAC	2 cut(s)	1338, 1532
Bbv12I	GWGCWC	2 cut(s)	30, 348
BbvCI	CCTCAGC	2 cut(s)	1167, 1428
BccI	CCATC	5 cut(s)	1165, 1556, 1606, 1871, 2582
BceAI	ACGGC	3 cut(s)	1736, 1851, 2328
BciT130I	CCWGG	3 cut(s)	110, 1802, 2085
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	2218, 2472
BfaI	CTAG	5 cut(s)	332, 933, 1769, 2003, 2289
BfmI	CTRYAG	3 cut(s)	40, 312, 320
BfoI	RGCGCY	1 cut(s)	188
BfrI	CTTAAG	1 cut(s)	793
BglII	AGATCT	1 cut(s)	316
BmcAI	AGTACT	3 cut(s)	1907, 2029, 2701
Bme1390I	CCNGG	3 cut(s)	110, 1802, 2085
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	1472
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	1053
BmrFI	CCNGG	3 cut(s)	110, 1802, 2085
BmrI	ACTGGG	2 cut(s)	1489, 1659
BmsI	GCATC	7 cut(s)	253, 671, 794, 1706, 1738, 1847, 2119
BmuI	ACTGGG	2 cut(s)	1489, 1659
BpiI	GAAGAC	2 cut(s)	1338, 1532
BplI	GAGNNNNNCTC	4 cut(s)	12, 44, 2017, 2049
Bpu10I	CCTNAGC	2 cut(s)	1167, 1428
BpuEI	CTTGAG	1 cut(s)	1759
BsaAI	YACGTR	1 cut(s)	896
BsaI	GGTCTC	2 cut(s)	2218, 2472
BsaJI	CCNNGG	7 cut(s)	60, 1143, 1204, 1218, 2083, 2228, 2485
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 1895, 1925
Bsc4I	CCNNNNNNNGG	2 cut(s)	1525, 2712
Bse118I	RCCGGY	1 cut(s)	1953
Bse1I	ACTGG	6 cut(s)	59, 94, 1495, 1654, 1913, 2344
Bse3DI	GCAATG	3 cut(s)	299, 565, 691
BseBI	CCWGG	3 cut(s)	110, 1802, 2085
BseDI	CCNNGG	7 cut(s)	60, 1143, 1204, 1218, 2083, 2228, 2485
BseGI	GGATG	4 cut(s)	219, 268, 1617, 2207
BseLI	CCNNNNNNNGG	2 cut(s)	1525, 2712
BseMI	GCAATG	3 cut(s)	299, 565, 691
BseMII	CTCAG	5 cut(s)	516, 642, 1158, 1419, 2313
BseNI	ACTGG	6 cut(s)	59, 94, 1495, 1654, 1913, 2344
BseRI	GAGGAG	4 cut(s)	77, 1445, 2245, 2287
BseYI	CCCAGC	1 cut(s)	2276
BsgI	GTGCAG	2 cut(s)	137, 1505
Bsh1236I	CGCG	3 cut(s)	49, 51, 203
BshFI	GGCC	5 cut(s)	578, 1142, 1223, 2343, 2592
BsiHKAI	GWGCWC	2 cut(s)	30, 348
BsiHKCI	CYCGRG	1 cut(s)	1472
BsiSI	CCGG	1 cut(s)	1954
BslFI	GGGAC	1 cut(s)	2743
BslI	CCNNNNNNNGG	2 cut(s)	1525, 2712
BsmAI	GTCTC	2 cut(s)	2218, 2472
BsmFI	GGGAC	1 cut(s)	2743
BsnI	GGCC	5 cut(s)	578, 1142, 1223, 2343, 2592
Bso31I	GGTCTC	2 cut(s)	2218, 2472
BsoBI	CYCGRG	1 cut(s)	1472
Bsp1286I	GDGCHC	2 cut(s)	30, 348
Bsp1407I	TGTACA	2 cut(s)	1830, 2652
Bsp143I	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
Bsp19I	CCATGG	1 cut(s)	1143
BspACI	CCGC	8 cut(s)	201, 401, 866, 989, 1693, 1733, 2180, 2392
BspANI	GGCC	5 cut(s)	578, 1142, 1223, 2343, 2592
BspCNI	CTCAG	5 cut(s)	517, 643, 1159, 1420, 2312
BspFNI	CGCG	3 cut(s)	49, 51, 203
BspHI	TCATGA	3 cut(s)	745, 1279, 2553
BspLI	GGNNCC	1 cut(s)	1053
BspMAI	CTGCAG	3 cut(s)	44, 316, 324
BspPI	GGATC	5 cut(s)	477, 1046, 1059, 1467, 2408
BspQI	GCTCTTC	2 cut(s)	1979, 2040
BspTI	CTTAAG	1 cut(s)	793
BspTNI	GGTCTC	2 cut(s)	2218, 2472
BsrDI	GCAATG	3 cut(s)	299, 565, 691
BsrFI	RCCGGY	1 cut(s)	1953
BsrGI	TGTACA	2 cut(s)	1830, 2652
BsrI	ACTGG	6 cut(s)	59, 94, 1495, 1654, 1913, 2344
BssAI	RCCGGY	1 cut(s)	1953
BssECI	CCNNGG	7 cut(s)	60, 1143, 1204, 1218, 2083, 2228, 2485
BssMI	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
BssSI	CACGAG	1 cut(s)	1194
BssT1I	CCWWGG	4 cut(s)	60, 1143, 1204, 2485
Bst2BI	CACGAG	1 cut(s)	1194
Bst2UI	CCWGG	3 cut(s)	110, 1802, 2085
Bst4CI	ACNGT	4 cut(s)	506, 975, 1602, 1853
Bst6I	CTCTTC	6 cut(s)	106, 1075, 1979, 2040, 2439, 2775
BstAFI	CTTAAG	1 cut(s)	793
BstAPI	GCANNNNNTGC	4 cut(s)	242, 301, 328, 1199
BstAUI	TGTACA	2 cut(s)	1830, 2652
BstBAI	YACGTR	1 cut(s)	896
BstDEI	CTNAG	6 cut(s)	525, 651, 1167, 1428, 2299, 2438
BstDSI	CCRYGG	1 cut(s)	1143
BstF5I	GGATG	4 cut(s)	219, 268, 1617, 2207
BstFNI	CGCG	3 cut(s)	49, 51, 203
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	5 cut(s)	51, 187, 205, 1438, 2645
BstKTI	GATC	9 cut(s)	319, 472, 490, 678, 1054, 1462, 2416, 2602, 2650
BstMAI	GTCTC	2 cut(s)	2218, 2472
BstMBI	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
BstNI	CCWGG	3 cut(s)	110, 1802, 2085
BstNSI	RCATGY	5 cut(s)	164, 299, 440, 786, 2633
BstSCI	CCNGG	3 cut(s)	108, 1800, 2083
BstSFI	CTRYAG	3 cut(s)	40, 312, 320
BstUI	CGCG	3 cut(s)	49, 51, 203
BstV2I	GAAGAC	2 cut(s)	1338, 1532
BstX2I	RGATCY	2 cut(s)	316, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	2 cut(s)	316, 1051
BsuRI	GGCC	5 cut(s)	578, 1142, 1223, 2343, 2592
BtgI	CCRYGG	1 cut(s)	1143
BtsCI	GGATG	4 cut(s)	219, 268, 1617, 2207
BtsIMutI	CAGTG	4 cut(s)	511, 637, 1858, 2382
CaiI	CAGNNNCTG	2 cut(s)	1166, 2381
CciI	TCATGA	3 cut(s)	745, 1279, 2553
CfoI	GCGC	5 cut(s)	51, 187, 205, 1438, 2645
Cfr10I	RCCGGY	1 cut(s)	1953
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	6 cut(s)	465, 1831, 1906, 2028, 2653, 2700
CviQI	GTAC	6 cut(s)	465, 1831, 1906, 2028, 2653, 2700
DdeI	CTNAG	6 cut(s)	525, 651, 1167, 1428, 2299, 2438
DpnI	GATC	9 cut(s)	318, 471, 489, 677, 1053, 1461, 2415, 2601, 2649
DpnII	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
DraI	TTTAAA	3 cut(s)	1443, 1726, 1980
EaeI	YGGCCR	1 cut(s)	2341
Eam1104I	CTCTTC	6 cut(s)	106, 1075, 1979, 2040, 2439, 2775
EarI	CTCTTC	6 cut(s)	106, 1075, 1979, 2040, 2439, 2775
Ecl136II	GAGCTC	2 cut(s)	28, 346
Eco130I	CCWWGG	4 cut(s)	60, 1143, 1204, 2485
Eco24I	GRGCYC	2 cut(s)	30, 348
Eco31I	GGTCTC	2 cut(s)	2218, 2472
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	28, 346
Eco57I	CTGAAG	4 cut(s)	173, 613, 798, 1526
Eco88I	CYCGRG	1 cut(s)	1472
EcoICRI	GAGCTC	2 cut(s)	28, 346
EcoRII	CCWGG	3 cut(s)	108, 1800, 2083
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	4 cut(s)	60, 1143, 1204, 2485
EcoT22I	ATGCAT	2 cut(s)	301, 2631
EcoT38I	GRGCYC	2 cut(s)	30, 348
ErhI	CCWWGG	4 cut(s)	60, 1143, 1204, 2485
FalI	AAGNNNNNCTT	4 cut(s)	445, 477, 911, 943
FaqI	GGGAC	1 cut(s)	2743
FauI	CCCGC	2 cut(s)	208, 1686
FauNDI	CATATG	3 cut(s)	554, 1093, 2314
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	1597
FokI	GGATG	4 cut(s)	206, 275, 1624, 2194
FriOI	GRGCYC	2 cut(s)	30, 348
FspBI	CTAG	5 cut(s)	332, 933, 1769, 2003, 2289
GlaI	GCGC	5 cut(s)	50, 186, 204, 1437, 2644
GsaI	CCCAGC	1 cut(s)	2280
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	5 cut(s)	578, 1142, 1223, 2343, 2592
HapII	CCGG	1 cut(s)	1954
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	5 cut(s)	51, 187, 205, 1438, 2645
Hin6I	GCGC	5 cut(s)	49, 185, 203, 1436, 2643
HinP1I	GCGC	5 cut(s)	49, 185, 203, 1436, 2643
HincII	GTYRAC	1 cut(s)	1647
HindII	GTYRAC	1 cut(s)	1647
HindIII	AAGCTT	3 cut(s)	213, 593, 1991
HpaII	CCGG	1 cut(s)	1954
HphI	GGTGA	3 cut(s)	630, 1424, 2678
Hpy166II	GTNNAC	5 cut(s)	377, 1598, 1647, 1833, 1951
Hpy188III	TCNNGA	6 cut(s)	746, 1064, 1280, 1505, 2554, 2723
Hpy8I	GTNNAC	5 cut(s)	377, 1598, 1647, 1833, 1951
HpyAV	CCTTC	9 cut(s)	139, 246, 995, 1234, 2143, 2229, 2551, 2720, 2799
HpyCH4III	ACNGT	4 cut(s)	506, 975, 1602, 1853
HpyCH4IV	ACGT	1 cut(s)	895
HpyF3I	CTNAG	6 cut(s)	525, 651, 1167, 1428, 2299, 2438
HpySE526I	ACGT	1 cut(s)	895
HspAI	GCGC	5 cut(s)	49, 185, 203, 1436, 2643
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
LguI	GCTCTTC	2 cut(s)	1979, 2040
LmnI	GCTCC	3 cut(s)	90, 148, 280
LweI	GCATC	7 cut(s)	253, 671, 794, 1706, 1738, 1847, 2119
MaeI	CTAG	5 cut(s)	332, 933, 1769, 2003, 2289
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	4 cut(s)	134, 391, 896, 2014
MalI	GATC	9 cut(s)	318, 471, 489, 677, 1053, 1461, 2415, 2601, 2649
MboI	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
MfeI	CAATTG	3 cut(s)	143, 326, 354
MflI	RGATCY	2 cut(s)	316, 1051
MhlI	GDGCHC	2 cut(s)	30, 348
MlyI	GAGTC	7 cut(s)	30, 74, 81, 767, 911, 1766, 2297
MmeI	TCCRAC	1 cut(s)	1126
Mph1103I	ATGCAT	2 cut(s)	301, 2631
MslI	CAYNNNNRTG	2 cut(s)	159, 441
MspA1I	CMGCKG	3 cut(s)	1163, 1456, 1733
MspCI	CTTAAG	1 cut(s)	793
MspI	CCGG	1 cut(s)	1954
MspR9I	CCNGG	3 cut(s)	110, 1802, 2085
MunI	CAATTG	3 cut(s)	143, 326, 354
MvaI	CCWGG	3 cut(s)	110, 1802, 2085
MvnI	CGCG	3 cut(s)	49, 51, 203
NcoI	CCATGG	1 cut(s)	1143
NdeI	CATATG	3 cut(s)	554, 1093, 2314
NdeII	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
NlaIV	GGNNCC	1 cut(s)	1053
NmuCI	GTSAC	2 cut(s)	896, 2014
NsiI	ATGCAT	2 cut(s)	301, 2631
NspI	RCATGY	5 cut(s)	164, 299, 440, 786, 2633
PaeI	GCATGC	2 cut(s)	299, 2633
PaeR7I	CTCGAG	1 cut(s)	1472
PagI	TCATGA	3 cut(s)	745, 1279, 2553
PciSI	GCTCTTC	2 cut(s)	1979, 2040
PfeI	GAWTC	6 cut(s)	425, 509, 635, 1889, 1973, 2244
PflFI	GACNNNGTC	1 cut(s)	949
PfoI	TCCNGGA	1 cut(s)	108
PleI	GAGTC	7 cut(s)	29, 74, 80, 767, 910, 1766, 2297
PpsI	GAGTC	7 cut(s)	29, 74, 80, 767, 910, 1766, 2297
Ppu21I	YACGTR	1 cut(s)	896
Psp124BI	GAGCTC	2 cut(s)	30, 348
Psp6I	CCWGG	3 cut(s)	108, 1800, 2083
PspFI	CCCAGC	1 cut(s)	2276
PspGI	CCWGG	3 cut(s)	108, 1800, 2083
PspN4I	GGNNCC	1 cut(s)	1053
PspPI	GGNCC	1 cut(s)	57
PspXI	VCTCGAGB	1 cut(s)	1472
PstI	CTGCAG	3 cut(s)	44, 316, 324
PstNI	CAGNNNCTG	2 cut(s)	1166, 2381
PsuI	RGATCY	2 cut(s)	316, 1051
PsyI	GACNNNGTC	1 cut(s)	949
PvuII	CAGCTG	2 cut(s)	1163, 1456
RsaI	GTAC	6 cut(s)	466, 1832, 1907, 2029, 2654, 2701
RsaNI	GTAC	6 cut(s)	465, 1831, 1906, 2028, 2653, 2700
RseI	CAYNNNNRTG	2 cut(s)	159, 441
SacI	GAGCTC	2 cut(s)	30, 348
SapI	GCTCTTC	2 cut(s)	1979, 2040
Sau3AI	GATC	9 cut(s)	316, 469, 487, 675, 1051, 1459, 2413, 2599, 2647
Sau96I	GGNCC	1 cut(s)	57
ScaI	AGTACT	3 cut(s)	1907, 2029, 2701
SchI	GAGTC	7 cut(s)	30, 74, 81, 767, 911, 1766, 2297
ScrFI	CCNGG	3 cut(s)	110, 1802, 2085
SduI	GDGCHC	2 cut(s)	30, 348
SfaNI	GCATC	7 cut(s)	253, 671, 794, 1706, 1738, 1847, 2119
SfcI	CTRYAG	3 cut(s)	40, 312, 320
Sfr274I	CTCGAG	1 cut(s)	1472
SinI	GGWCC	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	1472
SmiMI	CAYNNNNRTG	2 cut(s)	159, 441
SmlI	CTYRAG	3 cut(s)	793, 1472, 1774
SmoI	CTYRAG	3 cut(s)	793, 1472, 1774
SphI	GCATGC	2 cut(s)	299, 2633
SsiI	CCGC	8 cut(s)	201, 401, 866, 989, 1693, 1733, 2180, 2392
SspI	AATATT	1 cut(s)	1675
SspMI	CTAG	5 cut(s)	332, 933, 1769, 2003, 2289
SstI	GAGCTC	2 cut(s)	30, 348
StyD4I	CCNGG	3 cut(s)	108, 1800, 2083
StyI	CCWWGG	4 cut(s)	60, 1143, 1204, 2485
TaaI	ACNGT	4 cut(s)	506, 975, 1602, 1853
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	8 cut(s)	24, 78, 195, 953, 970, 1238, 1473, 1533
TaqII	GACCGA	1 cut(s)	2242
TatI	WGTACW	5 cut(s)	1830, 1905, 2027, 2652, 2699
TauI	GCSGC	1 cut(s)	2395
TfiI	GAWTC	6 cut(s)	425, 509, 635, 1889, 1973, 2244
TscAI	CASTG	4 cut(s)	511, 637, 1858, 2382
TseFI	GTSAC	2 cut(s)	896, 2014
Tsp45I	GTSAC	2 cut(s)	896, 2014
TspDTI	ATGAA	9 cut(s)	521, 623, 749, 753, 1014, 1268, 1296, 2301, 2570
TspGWI	ACGGA	2 cut(s)	482, 1195
TspRI	CASTG	4 cut(s)	511, 637, 1858, 2382
Tth111I	GACNNNGTC	1 cut(s)	949
Vha464I	CTTAAG	1 cut(s)	793
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	5 cut(s)	1211, 1261, 1465, 1721, 2518
XceI	RCATGY	5 cut(s)	164, 299, 440, 786, 2633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2267
XhoI	CTCGAG	1 cut(s)	1472
XmiI	GTMKAC	1 cut(s)	1597
XspI	CTAG	5 cut(s)	332, 933, 1769, 2003, 2289
ZrmI	AGTACT	3 cut(s)	1907, 2029, 2701
Zsp2I	ATGCAT	2 cut(s)	301, 2631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.