Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Reverse (-)

20054227 .. 20064695

Gene Structure 10469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25540.18

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3375 bp

ATGGGCCTGAATAGCACATTCCAAAGAACAAACGAACCCAATTCAAAGTCCGGCCCAGCCGACATGGAGAGGTTTGGTTTTGGATTGTTGCCGTACAAAATGTCAAACAAAGTGCTAAAGCTCAACCAATCACCCGTTGAAGCGAAGAAAGGAACACACATCAAACACACACAGAAAACGCGAGACTTCCCGCGACATCCCGATCCCTCACTCCGGCGACTCAGAATGGCTGCCGCCGTCGCCGAGAGGGCGGAGCTCGCCAAGCTCTGCACCTCACGTGACTGGTCCAAGGCCATCCGAGTCATCGACTCCCTCCTCTCCCAGTCTTCTTCCATCCAAGACATCTGCAACAGAGCATTCTGTTACAGCCAATTGGAGCTCCACAAGCACGTGGTTAAGGACTGTGATAGGGCGCTTCAGCTGGACCCTGCGCTTCTTCAAGCTTACATCCTCAAAGGCCATGCATTTTCTGCTTTGGGAAGGAAAGAGGATGCTTTTTTGGTTTGGGAGCAAGGCTATGAACATGCCTTGCGTCAGTGTGCAGATCTGAAGCAGTTGCTAGAACTGGGAGAGCTTTTAACAATTGCAAAGACGGACAAAAGTAATGGAGATGATAACCAAGCAAAAGAGTCAGCATCATCTAAACTTGTGTCCGAAGCAAGCCCGCATATTAATGGTAAATCTGGTGATACTTATAAGAATCACAATAAATTGAGTGGTGAATCAAAATTATGCTGTGAATCAACAGTTACCTCCGCGGTCCATAGCAAGGTTAATGGAAATGGAAATTTTGTCGCATCCAATGGAATTGGTGATAAAGCCCGAGGGAGTAAGAAGTTTGATAGCCAAATGAATGGGAATCATGATATTAATGATAAATTACATTCTGAATCATGCAATGATTTAAGTGATACATACAGTAAGTTACCTATGATTTGTAGCAAATCAAGTGATTTAACAGAAACTCCTCCCACACCCCCTAAACTAAGTACTAAATCCGATATACACCATGAAATTGGTGAGGAGTCCAAGAGAAGTAAAAAGTTCTCTGTTGCTAGACTTTCAAAGACCAAGTCAATAAGTGTGGATTTTCGACTATCAAGAGGTATAGCAGAGGTTAATGAAGGGAAGTATGCTCATGCCATATCTATGTTTGACAAGATATTGAAAGAGGATCCTAACTATCCAGAGGCACTAATAGGGAGAGGGACAGCCTATGCATTCCAACGAGAGCTTGATGCTGCAATAGCTGATTTTACAAAGGCCATGGAATCAAATCCATCAGCTTGTGAGGCATGGAAACGGAGAGGACAAGCACGAGCTGCCATGGGAGAATTTGTTGAGGCTATTGAAGATTTGTCCAAGGCATTAGAGTTTGAACCAAATTCAGCCGACATTTTGCACGAAAGGGGAATTGCCAACTTCAAGTTCAAGGAATTCTACACTGCCGTTGAAGACCTAACTGCATGCGTGAAACTTGACAAGGAAAATGCATCTGCGTACACATATTTGGGTTTAGCATTGTCCTCTATCGGTGAATATAAAAAAGCTGAGGAGGCACATTTGAAAGCAATTCAACTGGATCCGAAATTTCTTGAAGCATGGTTGCAGCTAACCCAGTTCTATCAAGATACGGCAAACCCAACCAAGGCTTTGGAATGTCTGCAGAAAGCTCTACAAATTGATGGGAGGTGCCTGGTGTTAACACTGGAGATTTTTTCTTTGACTAAATCTGAAAGGTTTGCCAAAGCATATCATTTGCGTGGACTACTGCTCCATGGGATGGGAGAACACAGCAAGGCTATTAAGGATTTGTCAACTGGTTTGAGCATCGAGAGTGCCAATATTGAGTGCTTGTACTTGCGGGCATCCTGCTACCATGCCCTTGGAGAATATGGACATGCGGTCAAGGACTACGACGCTGTGCTCGATTTGGAGCTAGACTCAATGGAGAAGTTTGTGTTGCAATGCCTTGCTTTTTATCAGAAAGAGGTTGCTCTATACACAGCATCAAGAATCAACAGTGAATTTTGCTGGTTTGATATTGATGGAGATATTGATTCACTTTTCAAGGAGTACTGGTGCAAGAGATTGCACCCCAAGAATGTATGCGAAAAGGTCTTTCGACAACCTCCCCTGCGTGAATCTTTGAAGAAGGGTAAGGTTAGAAAGCAAGATTTTCCAGTTACAAAGCAGAAGGCTGTTCTTCTGCAAGCTGCTGATTCAATTGGAAGGAAAATCCAATATGACTGTCCTGGCTTCTTACCAAATCGACGTCAGCATCGTATGGCAGGATTGGCTGTTATTGAGGTTGCACAAAAGGTTTCAAAAGCATGGCGTTCCTTCCAAGCGGAGTGGAAATATTCCAATAATAAAAGCACCTTGAAGTTTGGTAAGAGAGGCCGGAGAAGGGAAAGAGTTAATTTGCCCAGCCAGAATAGAGGCGGTGCTGGTTGCAGTACAAGTAGCTCTTCAGAGACCTCAACTTCATATGGAATTACAGAAGCTAATTCATCTGCACGGTCTATGATGTCATGGCATGAGGTTTATTCGATAGCTGTCAAATGGCGGCAGATTTCTGAACCGTGTGACCCTGTTGTGTGGATTAACAAGCTAAGTGAAGAGTTTAATGCTGGATTTGGGTCTCATACACCATTGATCCTTGGACAAGCAAAAGTTGTCCGCTACTTCCCTAATTTTGAAAGAACATTAGAAGTCGCCAAGGCTATAATGAAGGAAAGGTCATTTGTGTATAATAAGGTCGATAACCTTATTGATTTATCCAGGGATGGGAAATTGCAAGATATTATGCAAGCAAAATCTTGCACTGATTTATACAGAGTGGTTGGTGAGGACTTCTGGTTGTCTACTTGGTGCGATAGTACTGCCTTTGAGGGGGGGGAGAACAAATATGACTTTGCAATCAGAACACCTTGTACGCCTTCAAGGTGGGATGAATTTGATGCAGAAATGGCGAAGGCATGGGAAGCTATATGTAATGCTTATTGCGGTGAAAATTATGGATCTAATGAATTCACCGTGCTTGAAAATGTGAGAGATGCGATTTTAAGGATGACGTATTATTGGTACAATTTTATGCCTCTTTCAAGAGGCTCTGCAGCTGTTGGGTTTGTTGTTATGCTCGGATTATTTCTTGCTGCTAATATGGAGTTCATAGGAAATATCCCACAAGGTTTACAGGTAGATTGGGAAGCCATTCTGAACTCTGATCCGGACTCGTTTGTTAATTCGATGAAGACTTGGTTGTATCCGTGTCTGAAGTCAACGACATCCTGGAAAGATCATCCTGATGTGCAATCAACTCTGGCCACAACCGGTTCAGTTGTTGCTGCTCTGAGCACTTACAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

1125

Amino Acids

126.22

Weight (kDa)

8.06

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AatII	GACGTC	1 cut(s)	2278
AccB1I	GGYRCC	1 cut(s)	1692
AccB7I	CCANNNNNTGG	1 cut(s)	1783
AccI	GTMKAC	1 cut(s)	2867
AccII	CGCG	3 cut(s)	181, 193, 758
AccIII	TCCGGA	1 cut(s)	3232
AclWI	GGATC	8 cut(s)	197, 1169, 1182, 1577, 1590, 2653, 3031, 3224
AcoI	YGGCCR	1 cut(s)	3327
AcsI	RAATTY	8 cut(s)	787, 1334, 1384, 1436, 1589, 2027, 2957, 3032
AcuI	CTGAAG	4 cut(s)	401, 569, 2457, 3299
AcvI	CACGTG	2 cut(s)	278, 391
AcyI	GRCGYC	1 cut(s)	2275
AfaI	GTAC	9 cut(s)	95, 991, 1502, 1859, 2078, 2461, 2884, 2938, 3089
AfiI	CCNNNNNNNGG	7 cut(s)	213, 769, 1648, 1783, 2410, 2790, 2895
AgeI	ACCGGT	1 cut(s)	3335
AhdI	GACNNNNNGTC	1 cut(s)	1904
AjnI	CCWGG	4 cut(s)	1695, 2254, 2783, 3293
AjuI	GAANNNNNNNTTGG	2 cut(s)	1412, 1444
Alw21I	GWGCWC	4 cut(s)	258, 381, 1929, 3362
Alw26I	GTCTC	3 cut(s)	177, 2471, 2649
AlwI	GGATC	8 cut(s)	197, 1169, 1182, 1577, 1590, 2653, 3031, 3224
Ama87I	CYCGRG	1 cut(s)	822
Aor13HI	TCCGGA	1 cut(s)	3232
AoxI	GGCC	7 cut(s)	4, 52, 291, 457, 1263, 2401, 3327
ApeKI	GCWGC	8 cut(s)	230, 1241, 1322, 1609, 2216, 3119, 3158, 3350
ApoI	RAATTY	8 cut(s)	787, 1334, 1384, 1436, 1589, 2027, 2957, 3032
ArsI	GACNNNNNNTTYG	2 cut(s)	1058, 1090
AseI	ATTAAT	2 cut(s)	672, 870
AsiGI	ACCGGT	1 cut(s)	3335
Asp700I	GAANNNNTTC	1 cut(s)	3216
AspLEI	GCGC	2 cut(s)	415, 433
AspS9I	GGNCC	5 cut(s)	4, 53, 285, 424, 760
AsuHPI	GGTGA	9 cut(s)	123, 698, 731, 824, 1031, 1547, 2861, 3023, 3028
AvaI	CYCGRG	1 cut(s)	822
AvaII	GGWCC	3 cut(s)	285, 424, 760
BalI	TGGCCA	1 cut(s)	3329
BamHI	GGATCC	2 cut(s)	1174, 1582
BanI	GGYRCC	1 cut(s)	1692
BanII	GRGCYC	2 cut(s)	258, 381
BauI	CACGAG	1 cut(s)	1317
BbrPI	CACGTG	2 cut(s)	278, 391
BbsI	GAAGAC	3 cut(s)	318, 1461, 3263
Bbv12I	GWGCWC	4 cut(s)	258, 381, 1929, 3362
BbvCI	CCTCAGC	1 cut(s)	1551
BbvI	GCAGC	8 cut(s)	217, 1228, 1309, 1621, 2203, 3131, 3145, 3337
BccI	CCATC	7 cut(s)	302, 341, 1288, 1679, 1777, 2042, 2783
BceAI	ACGGC	4 cut(s)	76, 221, 1433, 1650
BcgI	CGANNNNNNTGC	2 cut(s)	2867, 2901
BciT130I	CCWGG	4 cut(s)	1697, 2256, 2785, 3295
BciVI	GTATCC	1 cut(s)	3279
BcoDI	GTCTC	3 cut(s)	177, 2471, 2649
BfaI	CTAG	3 cut(s)	560, 1056, 1940
BfmI	CTRYAG	2 cut(s)	1664, 3117
BfoI	RGCGCY	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	3279
BglI	GCCNNNNNGGC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	544
BmcAI	AGTACT	3 cut(s)	991, 2078, 2884
Bme1390I	CCNGG	4 cut(s)	1697, 2256, 2785, 3295
Bme18I	GGWCC	3 cut(s)	285, 424, 760
BmeRI	GACNNNNNGTC	1 cut(s)	1904
BmeT110I	CYCGRG	1 cut(s)	822
BmgT120I	GGNCC	5 cut(s)	4, 53, 285, 424, 760
BmiI	GGNNCC	4 cut(s)	426, 1176, 1584, 1694
BmrFI	CCNGG	4 cut(s)	1697, 2256, 2785, 3295
BmrI	ACTGGG	3 cut(s)	316, 575, 1612
BmuI	ACTGGG	3 cut(s)	316, 575, 1612
BpiI	GAAGAC	3 cut(s)	318, 1461, 3263
BplI	GAGNNNNNCTC	2 cut(s)	1928, 1960
BpmI	CTGGAG	1 cut(s)	1730
Bpu10I	CCTNAGC	1 cut(s)	1551
BsaAI	YACGTR	2 cut(s)	278, 391
BsaHI	GRCGYC	1 cut(s)	2275
BsaI	GGTCTC	2 cut(s)	2471, 2649
BsaWI	WCCGGW	2 cut(s)	3232, 3335
BsaXI	ACNNNNNCTCC	8 cut(s)	949, 979, 1323, 1353, 1758, 1788, 2066, 2096
Bsc4I	CCNNNNNNNGG	7 cut(s)	213, 769, 1648, 1783, 2410, 2790, 2895
Bse118I	RCCGGY	1 cut(s)	3335
Bse1I	ACTGG	9 cut(s)	287, 322, 570, 1584, 1618, 1713, 1825, 2084, 2183
Bse3DI	GCAATG	2 cut(s)	904, 1973
BseAI	TCCGGA	1 cut(s)	3232
BseBI	CCWGG	4 cut(s)	1697, 2256, 2785, 3295
BseLI	CCNNNNNNNGG	7 cut(s)	213, 769, 1648, 1783, 2410, 2790, 2895
BseMI	GCAATG	2 cut(s)	904, 1973
BseMII	CTCAG	3 cut(s)	235, 1542, 3347
BseNI	ACTGG	9 cut(s)	287, 322, 570, 1584, 1618, 1713, 1825, 2084, 2183
BseRI	GAGGAG	4 cut(s)	305, 957, 1037, 1568
BseXI	GCAGC	8 cut(s)	217, 1228, 1309, 1621, 2203, 3131, 3145, 3337
BseYI	CCCAGC	2 cut(s)	55, 2429
BsgI	GTGCAG	3 cut(s)	253, 561, 2502
Bsh1236I	CGCG	3 cut(s)	181, 193, 758
BshFI	GGCC	7 cut(s)	6, 54, 293, 459, 1265, 2403, 3329
BshNI	GGYRCC	1 cut(s)	1692
BshTI	ACCGGT	1 cut(s)	3335
BsiHKAI	GWGCWC	4 cut(s)	258, 381, 1929, 3362
BsiHKCI	CYCGRG	1 cut(s)	822
BsiSI	CCGG	5 cut(s)	51, 214, 2404, 3233, 3336
BslFI	GGGAC	1 cut(s)	1222
BslI	CCNNNNNNNGG	7 cut(s)	213, 769, 1648, 1783, 2410, 2790, 2895
BsmAI	GTCTC	3 cut(s)	177, 2471, 2649
BsmFI	GGGAC	1 cut(s)	1222
BsmI	GAATGC	2 cut(s)	356, 1220
BsnI	GGCC	7 cut(s)	6, 54, 293, 459, 1265, 2403, 3329
Bso31I	GGTCTC	2 cut(s)	2471, 2649
BsoBI	CYCGRG	1 cut(s)	822
Bsp1286I	GDGCHC	4 cut(s)	258, 381, 1929, 3362
Bsp13I	TCCGGA	1 cut(s)	3232
Bsp143I	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
Bsp19I	CCATGG	3 cut(s)	1266, 1326, 1777
BspANI	GGCC	7 cut(s)	6, 54, 293, 459, 1265, 2403, 3329
BspCNI	CTCAG	3 cut(s)	234, 1543, 3348
BspEI	TCCGGA	1 cut(s)	3232
BspFNI	CGCG	3 cut(s)	181, 193, 758
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	4 cut(s)	426, 1176, 1584, 1694
BspMAI	CTGCAG	2 cut(s)	1668, 3121
BspPI	GGATC	8 cut(s)	197, 1169, 1182, 1577, 1590, 2653, 3031, 3224
BspQI	GCTCTTC	1 cut(s)	2476
BspT107I	GGYRCC	1 cut(s)	1692
BspTNI	GGTCTC	2 cut(s)	2471, 2649
BsrDI	GCAATG	2 cut(s)	904, 1973
BsrFI	RCCGGY	1 cut(s)	3335
BsrI	ACTGG	9 cut(s)	287, 322, 570, 1584, 1618, 1713, 1825, 2084, 2183
BssAI	RCCGGY	1 cut(s)	3335
BssMI	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
BssNI	GRCGYC	1 cut(s)	2275
BssSI	CACGAG	1 cut(s)	1317
BssT1I	CCWWGG	9 cut(s)	288, 1266, 1326, 1362, 1647, 1777, 1885, 2662, 2721
Bst2BI	CACGAG	1 cut(s)	1317
Bst2UI	CCWGG	4 cut(s)	1697, 2256, 2785, 3295
Bst4CI	ACNGT	8 cut(s)	404, 748, 920, 2024, 2252, 2523, 2586, 3040
Bst6I	CTCTTC	2 cut(s)	2476, 2616
BstACI	GRCGYC	1 cut(s)	2275
BstAPI	GCANNNNNTGC	2 cut(s)	470, 1322
BstBAI	YACGTR	2 cut(s)	278, 391
BstC8I	GCNNGC	7 cut(s)	258, 661, 665, 1468, 1866, 2214, 2814
BstDEI	CTNAG	5 cut(s)	221, 986, 1551, 2615, 3356
BstDSI	CCRYGG	4 cut(s)	756, 1266, 1326, 1777
BstFNI	CGCG	3 cut(s)	181, 193, 758
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	2 cut(s)	415, 433
BstKTI	GATC	8 cut(s)	205, 547, 1177, 1585, 2661, 3026, 3232, 3304
BstMAI	GTCTC	3 cut(s)	177, 2471, 2649
BstMBI	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
BstNI	CCWGG	4 cut(s)	1697, 2256, 2785, 3295
BstNSI	RCATGY	3 cut(s)	527, 1470, 1904
BstSCI	CCNGG	4 cut(s)	1695, 2254, 2783, 3293
BstSFI	CTRYAG	2 cut(s)	1664, 3117
BstUI	CGCG	3 cut(s)	181, 193, 758
BstV1I	GCAGC	8 cut(s)	217, 1228, 1309, 1621, 2203, 3131, 3145, 3337
BstV2I	GAAGAC	3 cut(s)	318, 1461, 3263
BstX2I	RGATCY	4 cut(s)	544, 1174, 1582, 3023
BstXI	CCANNNNNNTGG	4 cut(s)	854, 1016, 1654, 1886
BstYI	RGATCY	4 cut(s)	544, 1174, 1582, 3023
BsuI	GTATCC	1 cut(s)	3279
BsuRI	GGCC	7 cut(s)	6, 54, 293, 459, 1265, 2403, 3329
BtgI	CCRYGG	4 cut(s)	756, 1266, 1326, 1777
BtsI	GCAGTG	1 cut(s)	1443
BtsIMutI	CAGTG	5 cut(s)	542, 1443, 1706, 2029, 2826
Cac8I	GCNNGC	7 cut(s)	258, 661, 665, 1468, 1866, 2214, 2814
CciI	TCATGA	1 cut(s)	862
CfoI	GCGC	2 cut(s)	415, 433
Cfr10I	RCCGGY	1 cut(s)	3335
Cfr13I	GGNCC	5 cut(s)	4, 53, 285, 424, 760
Cfr42I	CCGCGG	1 cut(s)	759
CseI	GACGC	2 cut(s)	521, 1928
Csp6I	GTAC	9 cut(s)	94, 990, 1501, 1858, 2077, 2460, 2883, 2937, 3088
CspAI	ACCGGT	1 cut(s)	3335
CspCI	CAANNNNNGTGG	4 cut(s)	1065, 1100, 2336, 2371
CviQI	GTAC	9 cut(s)	94, 990, 1501, 1858, 2077, 2460, 2883, 2937, 3088
DdeI	CTNAG	5 cut(s)	221, 986, 1551, 2615, 3356
DpnI	GATC	8 cut(s)	204, 546, 1176, 1584, 2660, 3025, 3231, 3303
DpnII	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
DriI	GACNNNNNGTC	1 cut(s)	1904
EaeI	YGGCCR	1 cut(s)	3327
Eam1104I	CTCTTC	2 cut(s)	2476, 2616
Eam1105I	GACNNNNNGTC	1 cut(s)	1904
EarI	CTCTTC	2 cut(s)	2476, 2616
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	2 cut(s)	256, 379
Eco130I	CCWWGG	9 cut(s)	288, 1266, 1326, 1362, 1647, 1777, 1885, 2662, 2721
Eco24I	GRGCYC	2 cut(s)	258, 381
Eco31I	GGTCTC	2 cut(s)	2471, 2649
Eco47I	GGWCC	3 cut(s)	285, 424, 760
Eco53kI	GAGCTC	2 cut(s)	256, 379
Eco57I	CTGAAG	4 cut(s)	401, 569, 2457, 3299
Eco72I	CACGTG	2 cut(s)	278, 391
Eco88I	CYCGRG	1 cut(s)	822
EcoICRI	GAGCTC	2 cut(s)	256, 379
EcoRI	GAATTC	2 cut(s)	1436, 3032
EcoRII	CCWGG	4 cut(s)	1695, 2254, 2783, 3293
EcoT14I	CCWWGG	9 cut(s)	288, 1266, 1326, 1362, 1647, 1777, 1885, 2662, 2721
EcoT22I	ATGCAT	3 cut(s)	466, 1222, 1495
EcoT38I	GRGCYC	2 cut(s)	258, 381
ErhI	CCWWGG	9 cut(s)	288, 1266, 1326, 1362, 1647, 1777, 1885, 2662, 2721
FalI	AAGNNNNNCTT	2 cut(s)	2455, 2487
FaqI	GGGAC	1 cut(s)	1222
FauI	CCCGC	3 cut(s)	198, 672, 1857
FauNDI	CATATG	1 cut(s)	2491
FblI	GTMKAC	1 cut(s)	2867
FriOI	GRGCYC	2 cut(s)	258, 381
FspBI	CTAG	3 cut(s)	560, 1056, 1940
GlaI	GCGC	2 cut(s)	414, 432
GsaI	CCCAGC	2 cut(s)	59, 2433
GsuI	CTGGAG	1 cut(s)	1730
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	7 cut(s)	6, 54, 293, 459, 1265, 2403, 3329
HapII	CCGG	5 cut(s)	51, 214, 2404, 3233, 3336
HgaI	GACGC	2 cut(s)	521, 1928
HhaI	GCGC	2 cut(s)	415, 433
Hin1I	GRCGYC	1 cut(s)	2275
Hin6I	GCGC	2 cut(s)	413, 431
HinP1I	GCGC	2 cut(s)	413, 431
HincII	GTYRAC	3 cut(s)	1704, 1818, 3285
HindII	GTYRAC	3 cut(s)	1704, 1818, 3285
HindIII	AAGCTT	1 cut(s)	441
HpaI	GTTAAC	1 cut(s)	1704
HpaII	CCGG	5 cut(s)	51, 214, 2404, 3233, 3336
HphI	GGTGA	9 cut(s)	123, 698, 731, 824, 1031, 1547, 2861, 3023, 3028
Hpy166II	GTNNAC	7 cut(s)	1503, 1704, 1766, 1818, 2868, 3197, 3285
Hpy8I	GTNNAC	7 cut(s)	1503, 1704, 1766, 1818, 2868, 3197, 3285
Hpy99I	CGWCG	3 cut(s)	242, 1922, 2277
HpyCH4III	ACNGT	8 cut(s)	404, 748, 920, 2024, 2252, 2523, 2586, 3040
HpyCH4IV	ACGT	4 cut(s)	277, 390, 2275, 3077
HpyF3I	CTNAG	5 cut(s)	221, 986, 1551, 2615, 3356
HpySE526I	ACGT	4 cut(s)	277, 390, 2275, 3077
Hsp92I	GRCGYC	1 cut(s)	2275
HspAI	GCGC	2 cut(s)	413, 431
Kpn2I	TCCGGA	1 cut(s)	3232
KspAI	GTTAAC	1 cut(s)	1704
KspI	CCGCGG	1 cut(s)	759
Kzo9I	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
LguI	GCTCTTC	1 cut(s)	2476
LmnI	GCTCC	6 cut(s)	253, 376, 384, 508, 1779, 1936
Lsp1109I	GCAGC	8 cut(s)	217, 1228, 1309, 1621, 2203, 3131, 3145, 3337
MaeI	CTAG	3 cut(s)	560, 1056, 1940
MaeII	ACGT	4 cut(s)	277, 390, 2275, 3077
MaeIII	GTNAC	6 cut(s)	278, 362, 748, 924, 2185, 2588
MalI	GATC	8 cut(s)	204, 546, 1176, 1584, 2660, 3025, 3231, 3303
MboI	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
MfeI	CAATTG	3 cut(s)	371, 582, 2226
MflI	RGATCY	4 cut(s)	544, 1174, 1582, 3023
MhlI	GDGCHC	4 cut(s)	258, 381, 1929, 3362
MlsI	TGGCCA	1 cut(s)	3329
MluNI	TGGCCA	1 cut(s)	3329
MlyI	GAGTC	7 cut(s)	213, 302, 309, 638, 1034, 1937, 3230
MmeI	TCCRAC	1 cut(s)	1249
Mox20I	TGGCCA	1 cut(s)	3329
Mph1103I	ATGCAT	3 cut(s)	466, 1222, 1495
MroI	TCCGGA	1 cut(s)	3232
MroXI	GAANNNNTTC	1 cut(s)	3216
MscI	TGGCCA	1 cut(s)	3329
MslI	CAYNNNNRTG	4 cut(s)	672, 1148, 1761, 3309
Msp20I	TGGCCA	1 cut(s)	3329
MspA1I	CMGCKG	3 cut(s)	421, 758, 3122
MspI	CCGG	5 cut(s)	51, 214, 2404, 3233, 3336
MspR9I	CCNGG	4 cut(s)	1697, 2256, 2785, 3295
MunI	CAATTG	3 cut(s)	371, 582, 2226
Mva1269I	GAATGC	2 cut(s)	356, 1220
MvaI	CCWGG	4 cut(s)	1697, 2256, 2785, 3295
MvnI	CGCG	3 cut(s)	181, 193, 758
NcoI	CCATGG	3 cut(s)	1266, 1326, 1777
NdeI	CATATG	1 cut(s)	2491
NdeII	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
NlaIV	GGNNCC	4 cut(s)	426, 1176, 1584, 1694
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	278, 2588
NsiI	ATGCAT	3 cut(s)	466, 1222, 1495
NspI	RCATGY	3 cut(s)	527, 1470, 1904
PaeI	GCATGC	1 cut(s)	1470
PagI	TCATGA	1 cut(s)	862
PciSI	GCTCTTC	1 cut(s)	2476
PcsI	WCGNNNNNNNCGW	2 cut(s)	1926, 2281
PctI	GAATGC	2 cut(s)	356, 1220
PdmI	GAANNNNTTC	1 cut(s)	3216
PflFI	GACNNNGTC	1 cut(s)	1072
PflMI	CCANNNNNTGG	1 cut(s)	1783
PfoI	TCCNGGA	1 cut(s)	3293
PinAI	ACCGGT	1 cut(s)	3335
PleI	GAGTC	7 cut(s)	213, 302, 308, 637, 1033, 1937, 3230
PmaCI	CACGTG	2 cut(s)	278, 391
PmlI	CACGTG	2 cut(s)	278, 391
PpsI	GAGTC	7 cut(s)	213, 302, 308, 637, 1033, 1937, 3230
Ppu21I	YACGTR	2 cut(s)	278, 391
PshBI	ATTAAT	2 cut(s)	672, 870
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	2 cut(s)	258, 381
Psp6I	CCWGG	4 cut(s)	1695, 2254, 2783, 3293
PspCI	CACGTG	2 cut(s)	278, 391
PspFI	CCCAGC	2 cut(s)	55, 2429
PspGI	CCWGG	4 cut(s)	1695, 2254, 2783, 3293
PspN4I	GGNNCC	4 cut(s)	426, 1176, 1584, 1694
PspPI	GGNCC	5 cut(s)	4, 53, 285, 424, 760
PsrI	GAACNNNNNNTAC	2 cut(s)	2920, 2952
PstI	CTGCAG	2 cut(s)	1668, 3121
PsuI	RGATCY	4 cut(s)	544, 1174, 1582, 3023
PsyI	GACNNNGTC	1 cut(s)	1072
PvuII	CAGCTG	2 cut(s)	421, 3122
RsaI	GTAC	9 cut(s)	95, 991, 1502, 1859, 2078, 2461, 2884, 2938, 3089
RsaNI	GTAC	9 cut(s)	94, 990, 1501, 1858, 2077, 2460, 2883, 2937, 3088
RseI	CAYNNNNRTG	4 cut(s)	672, 1148, 1761, 3309
SacI	GAGCTC	2 cut(s)	258, 381
SacII	CCGCGG	1 cut(s)	759
SapI	GCTCTTC	1 cut(s)	2476
Sau3AI	GATC	8 cut(s)	202, 544, 1174, 1582, 2658, 3023, 3229, 3301
Sau96I	GGNCC	5 cut(s)	4, 53, 285, 424, 760
ScaI	AGTACT	3 cut(s)	991, 2078, 2884
SchI	GAGTC	7 cut(s)	213, 302, 309, 638, 1034, 1937, 3230
ScrFI	CCNGG	4 cut(s)	1697, 2256, 2785, 3295
SduI	GDGCHC	4 cut(s)	258, 381, 1929, 3362
SfcI	CTRYAG	2 cut(s)	1664, 3117
Sfr303I	CCGCGG	1 cut(s)	759
SgrBI	CCGCGG	1 cut(s)	759
SinI	GGWCC	3 cut(s)	285, 424, 760
SmiMI	CAYNNNNRTG	4 cut(s)	672, 1148, 1761, 3309
SphI	GCATGC	1 cut(s)	1470
SspI	AATATT	2 cut(s)	1846, 2363
SspMI	CTAG	3 cut(s)	560, 1056, 1940
SstI	GAGCTC	2 cut(s)	258, 381
StyD4I	CCNGG	4 cut(s)	1695, 2254, 2783, 3293
StyI	CCWWGG	9 cut(s)	288, 1266, 1326, 1362, 1647, 1777, 1885, 2662, 2721
TaaI	ACNGT	8 cut(s)	404, 748, 920, 2024, 2252, 2523, 2586, 3040
TaiI	ACGT	4 cut(s)	280, 393, 2278, 3080
TaqI	TCGA	9 cut(s)	306, 1093, 1833, 1929, 2125, 2272, 2552, 2763, 3251
TatI	WGTACW	5 cut(s)	989, 1857, 2076, 2459, 2882
TauI	GCSGC	2 cut(s)	236, 2572
TscAI	CASTG	5 cut(s)	542, 1450, 1713, 2029, 2833
TseFI	GTSAC	2 cut(s)	278, 2588
TseI	GCWGC	8 cut(s)	230, 1241, 1322, 1609, 2216, 3119, 3158, 3350
Tsp45I	GTSAC	2 cut(s)	278, 2588
TspGWI	ACGGA	3 cut(s)	608, 1318, 3261
TspRI	CASTG	5 cut(s)	542, 1450, 1713, 2029, 2833
Tth111I	GACNNNGTC	1 cut(s)	1072
Van91I	CCANNNNNTGG	1 cut(s)	1783
VpaK11BI	GGWCC	3 cut(s)	285, 424, 760
VspI	ATTAAT	2 cut(s)	672, 870
XapI	RAATTY	8 cut(s)	787, 1334, 1384, 1436, 1589, 2027, 2957, 3032
XceI	RCATGY	3 cut(s)	527, 1470, 1904
XmiI	GTMKAC	1 cut(s)	2867
XmnI	GAANNNNTTC	1 cut(s)	3216
XspI	CTAG	3 cut(s)	560, 1056, 1940
ZraI	GACGTC	1 cut(s)	2276
ZrmI	AGTACT	3 cut(s)	991, 2078, 2884
Zsp2I	ATGCAT	3 cut(s)	466, 1222, 1495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.