Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Forward (+)

33419580 .. 33422233

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGCAATCTCCGAGCGAGTCGAGCTCGCCAAGGTCCGCAGCTCGCGCGACTGGTCCAAGGCAATCCGAGTCCTCGACTCGCTCCTCAACCAGTCCTCTTCAATCCGGGACATCGGTTCCAACAGAGCCTTCTGTTACAGCCAATTGGAGCTGCACAAGCATGTGGTCCAGGATTGTGATAGGGCGCTTCAGCTCGACCCCGCGCTGCTTCAAGCTTACGGCCTCAAAGGTAGAGTTGTTCAAGCGGTGCCGATTGGAAGTACCATAACTCGAGAGGACTGGATCTGCGGACTGGCTTTTTTCATGTTGAGGCAAATTAAAGCTGCCCCTAATAACTTTGATCCTGTAAACAAAATTGGTATGGATGTGAGGATCATAACATATGAGACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

8.91

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AccII	CGCG	3 cut(s)	49, 51, 206
AciI	CCGC	5 cut(s)	5, 40, 204, 248, 291
AclWI	GGATC	3 cut(s)	293, 338, 383
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	105, 215, 245
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	28, 45, 154, 196, 218, 326
AluI	AGCT	6 cut(s)	28, 45, 154, 196, 218, 326
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	3 cut(s)	293, 338, 383
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	42, 154, 208, 326
AspLEI	GCGC	3 cut(s)	51, 190, 208
AspS9I	GGNCC	3 cut(s)	37, 57, 169
AsuC2I	CCSGG	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	3 cut(s)	37, 57, 169
BanI	GGYRCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	54, 141, 195, 313
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	191
BisI	GCNGC	5 cut(s)	6, 43, 155, 209, 327
BlsI	GCNGC	5 cut(s)	7, 44, 156, 210, 328
Bme1390I	CCNGG	2 cut(s)	110, 173
Bme18I	GGWCC	3 cut(s)	37, 57, 169
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	3 cut(s)	37, 57, 169
BmiI	GGNNCC	2 cut(s)	121, 252
BmrFI	CCNGG	2 cut(s)	110, 173
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	33, 60
Bse1I	ACTGG	4 cut(s)	59, 94, 287, 300
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	33, 60
BseGI	GGATG	1 cut(s)	373
BseNI	ACTGG	4 cut(s)	59, 94, 287, 300
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	54, 141, 195, 313
BsgI	GTGCAG	1 cut(s)	140
Bsh1236I	CGCG	3 cut(s)	49, 51, 206
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	285, 343, 375
BspACI	CCGC	5 cut(s)	5, 40, 204, 248, 291
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	3 cut(s)	49, 51, 206
BspLI	GGNNCC	2 cut(s)	121, 252
BspPI	GGATC	3 cut(s)	293, 338, 383
BspT107I	GGYRCC	1 cut(s)	250
BsrI	ACTGG	4 cut(s)	59, 94, 287, 300
BssECI	CCNNGG	2 cut(s)	33, 60
BssMI	GATC	3 cut(s)	285, 343, 375
BssT1I	CCWWGG	2 cut(s)	33, 60
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	30, 47
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	3 cut(s)	49, 51, 206
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	3 cut(s)	51, 190, 208
BstKTI	GATC	3 cut(s)	288, 346, 378
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	285, 343, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 48, 160
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	108, 171
BstUI	CGCG	3 cut(s)	49, 51, 206
BstV1I	GCAGC	4 cut(s)	54, 141, 195, 313
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	30, 47
CfoI	GCGC	3 cut(s)	51, 190, 208
Cfr13I	GGNCC	3 cut(s)	37, 57, 169
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	164, 307
CviQI	GTAC	1 cut(s)	264
DpnI	GATC	3 cut(s)	287, 345, 377
DpnII	GATC	3 cut(s)	285, 343, 375
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	33, 60
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	3 cut(s)	37, 57, 169
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	33, 60
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	2 cut(s)	33, 60
FaeI	CATG	2 cut(s)	167, 310
FaiI	YATR	7 cut(s)	165, 269, 308, 365, 380, 385, 387
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	163, 306
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	5 cut(s)	6, 43, 155, 209, 327
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	6, 43, 155, 209, 327
GlaI	GCGC	3 cut(s)	50, 189, 207
GluI	GCNGC	5 cut(s)	6, 43, 155, 209, 327
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	3 cut(s)	51, 190, 208
Hin1II	CATG	2 cut(s)	167, 310
Hin6I	GCGC	3 cut(s)	49, 188, 206
HinP1I	GCGC	3 cut(s)	49, 188, 206
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	21, 72, 80
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	16, 71
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 48, 160
Hsp92II	CATG	2 cut(s)	167, 310
HspAI	GCGC	3 cut(s)	49, 188, 206
Kzo9I	GATC	3 cut(s)	285, 343, 375
LmnI	GCTCC	2 cut(s)	90, 151
LpnPI	CCDG	8 cut(s)	40, 107, 122, 158, 185, 268, 281, 360
Lsp1109I	GCAGC	4 cut(s)	54, 141, 195, 313
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	3 cut(s)	287, 345, 377
MboI	GATC	3 cut(s)	285, 343, 375
MboII	GAAGA	1 cut(s)	93
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	3 cut(s)	146, 318, 357
MlyI	GAGTC	3 cut(s)	30, 74, 81
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	86, 98, 109, 236, 271, 306, 366
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	110, 173
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	3 cut(s)	49, 51, 206
MwoI	GCNNNNNNNGC	3 cut(s)	25, 48, 160
NciI	CCSGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	3 cut(s)	285, 343, 375
NlaIII	CATG	2 cut(s)	167, 310
NlaIV	GGNNCC	2 cut(s)	121, 252
NspI	RCATGY	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	273
PfoI	TCCNGGA	2 cut(s)	108, 171
PkrI	GCNGC	5 cut(s)	7, 44, 156, 210, 328
PleI	GAGTC	3 cut(s)	29, 74, 80
PpsI	GAGTC	3 cut(s)	29, 74, 80
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	121, 252
PspPI	GGNCC	3 cut(s)	37, 57, 169
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	5 cut(s)	6, 43, 155, 209, 327
Sau3AI	GATC	3 cut(s)	285, 343, 375
Sau96I	GGNCC	3 cut(s)	37, 57, 169
SchI	GAGTC	3 cut(s)	30, 74, 81
ScrFI	CCNGG	2 cut(s)	110, 173
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	30, 39, 47, 156, 198, 220, 235, 328
Sfr274I	CTCGAG	1 cut(s)	273
SinI	GGWCC	3 cut(s)	37, 57, 169
SlaI	CTCGAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	146, 318, 357
SsiI	CCGC	5 cut(s)	5, 40, 204, 248, 291
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	108, 171
StyI	CCWWGG	2 cut(s)	33, 60
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	4 cut(s)	24, 78, 198, 274
TasI	AATT	3 cut(s)	146, 318, 357
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseI	GCWGC	4 cut(s)	42, 154, 208, 326
TspDTI	ATGAA	1 cut(s)	295
VpaK11BI	GGWCC	3 cut(s)	37, 57, 169
XceI	RCATGY	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.