Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Reverse (-)

34109928 .. 34114287

Gene Structure 4360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG316900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCAGCAATCTCTGAGCGAGTCGAGCTCGCCAAGATCTGCAGCTCGCGCGACTGGTCCGAGGCAATTCGAGTCCTCGACTCGCTCCTCAACCAGTCCTCTTCAATCCAGGGTATCTGGGGTCATTTGGAAAATGAACGGAATATGGAAACTAGGAATTGTTCCAAGGCATATTACCTAGAAGTTACAGTACTGCTGTTGAAGGTTTTTTTTTTTTTTCCTCAGTTGGCTTTGGGCTTAGAGTGCTCAACCCTTTGCATGATGGACAAGTTACCTGACCTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

5.31

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	49, 51
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	105, 202
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	28, 45
AluI	AGCT	2 cut(s)	28, 45
Alw21I	GWGCWC	2 cut(s)	30, 248
ApeKI	GCWGC	2 cut(s)	5, 42
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	30
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
Bbv12I	GWGCWC	2 cut(s)	30, 248
BbvI	GCAGC	2 cut(s)	17, 54
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	2 cut(s)	153, 179
BfmI	CTRYAG	1 cut(s)	40
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	2 cut(s)	6, 43
BlsI	GCNGC	2 cut(s)	7, 44
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BsaJI	CCNNGG	3 cut(s)	60, 109, 165
Bse1I	ACTGG	2 cut(s)	59, 94
Bse21I	CCTNAGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	60, 109, 165
BseMII	CTCAG	2 cut(s)	6, 236
BseNI	ACTGG	2 cut(s)	59, 94
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	17, 54
Bsh1236I	CGCG	2 cut(s)	49, 51
BsiHKAI	GWGCWC	2 cut(s)	30, 248
Bsp1286I	GDGCHC	2 cut(s)	30, 248
Bsp143I	GATC	1 cut(s)	36
BspCNI	CTCAG	2 cut(s)	7, 235
BspFNI	CGCG	2 cut(s)	49, 51
BspMAI	CTGCAG	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	59, 94
BssECI	CCNNGG	3 cut(s)	60, 109, 165
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	30, 47
BstDEI	CTNAG	4 cut(s)	15, 222, 238, 281
BstFNI	CGCG	2 cut(s)	49, 51
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 48, 243
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	2 cut(s)	49, 51
BstV1I	GCAGC	2 cut(s)	17, 54
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	30, 47
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	4 cut(s)	28, 45, 230, 237
CviKI_1	RGCY	4 cut(s)	28, 45, 230, 237
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	4 cut(s)	15, 222, 238, 281
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	262
FaiI	YATR	3 cut(s)	146, 172, 260
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	6, 43
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	6, 43
FspBI	CTAG	2 cut(s)	153, 179
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	6, 43
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	21, 72, 80
Hpy188I	TCNGA	2 cut(s)	16, 61
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	42, 258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 48, 243
HpyF3I	CTNAG	4 cut(s)	15, 222, 238, 281
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	40, 95, 103, 107, 122, 268
Lsp1109I	GCAGC	2 cut(s)	17, 54
MaeI	CTAG	2 cut(s)	153, 179
MaeIII	GTNAC	2 cut(s)	184, 270
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	30, 248
MluCI	AATT	2 cut(s)	66, 157
MlyI	GAGTC	3 cut(s)	30, 74, 81
MnlI	CCTC	5 cut(s)	55, 86, 98, 109, 231
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	49, 51
MwoI	GCNNNNNNNGC	3 cut(s)	25, 48, 243
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	7, 44
PleI	GAGTC	3 cut(s)	29, 74, 80
PpsI	GAGTC	3 cut(s)	29, 74, 80
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	6, 43
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	57
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	3 cut(s)	30, 74, 81
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	30, 248
SetI	ASST	7 cut(s)	30, 47, 180, 207, 277, 282, 287
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	2 cut(s)	66, 157
SspMI	CTAG	2 cut(s)	153, 179
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	24, 70, 78
TasI	AATT	2 cut(s)	66, 157
TatI	WGTACW	1 cut(s)	190
TseI	GCWGC	2 cut(s)	5, 42
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	57
XspI	CTAG	2 cut(s)	153, 179
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.