Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Forward (+)

74187400 .. 74198082

Gene Structure 10683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3255 bp

ATGCGAAGAAACGAACAAAGCTCTAGAAGGTGTGAGCCTGTGAGGGAGAGAGGGAGAGAGAGAAAAGAAAACCGAGTGCCGCTGCTCGATCCGTCCGAGTCTACTCGCTCCGGCCACCGCAAATGGCAGCAATCTCCGAGCGAGTCGAGCTCGCCAAGCTCTGCAGCTCGCGCGACTGGTCCAAGGCAATCCGAGTCCTCGACTCGCTCCTCAACCAGTCCTCTTCAATCCAGGACATCTGGTTCCAACAGAGCCTTCTGTTACAGCCAATTAGAGCTGCACAAGCATGTGGTCAAGGATTGTGATAGGGCGCTTCAGCTCGACCCCGCGCTGCTTCAAGCTTACATCCTCAAAGGTCGTGCATTTTCTGCTCTTGGAAGGAAAGAGGATGCTGTTTTGGTTTGGGAGCAAGGGTATGAGCATGCATTACGTCAGTCTGCAGATCTGCAGCAATTGCTAGAGCTGAAAGAGCTCTTATCAATTGCAGAACGGGATAAAAGTGGACACGAAAACCATGCAACAGAGGCGGTGTCTGCTACGCTTGTATCTGAATCTACACCACATGTGAATGGGATATCAAGTGAAACTTGTACGGATCAGAGTAATTTGAGTGATCAATCCCAATTACGCTGTGAATCAACCATTTCCTCTGAGATTCATAGCAAGTCTAATGATAACATATGCAATGGAGAAGTTGATAAGGCCAGAGGAAAGAAGAAGCTTGATAGCCAAATGAATGGAAACCATGATAGCTTCAGTGAATCACCCATTACATCTGAGGTTCAGAGCGACTCCAATGAGAACAGATGCAATGGTATAGGTGGTAAAGCCAGAGGGAAGAAGAAGTTTGATAGCCAGATGAATGAAAATCATGATATTGAGGGACAATTGAGTAATGACTCTGAAGCATGTAATGACTTAAGTGATAGATGCAACAAGTTGCCTATGATTTGTAGTAAATCAAGTGATTTAGCTGAAACTCCCCCACACCCCCAAGTTAAGGGTATAGCGGAGGTAAGTTGCAATGCCTTCATTTGGTTAATGAAGGGAAATATCCTCATGCCATATCTATATTTGACCAGTTTTCATCAGTTCCACTCCTTTCCCTTTTTCTTTTCTGGTGTGTCGATGGGAAGAGCAGGTCTAGAGATATTGAAAGAGGATCCTAATTATCCAGAGGCACTAATAGGAAGAGGAACAGCATATGCTTTCCAACGAGAACTTATGGCTGCAATAGCTGATTTTACAAAGGCCATGGAAACAAATCCATCAGCTGCTGAGGCATGGAAACGGAGAGGGCAGGCACGAGCTGCCCTTGGAGAATTTACCGAGGCCATTGAAGATTTGTCGAAGGCATTAGAGTTTGAACCAAATTCAGCAGATATTCTTCATGAAAGGGGTATTGCCAATTTCAAGTTCAAGGATTTCTATACTGCTATTGAAGACCTATTTACCTGTGTGAAACTTGATAAGGATAACACATCTGCATACACATATTTGGGTTTGGCGTTATCTTCTATTGGTGAATATAAAAGAGCTGAGGAGGCGCATTTAAAAGCAATTCAGCTGGATCAGAATTTCCTCGAGGCATGGGTGCAGCTAACCCAGTTCTATCAAGATATGGCAAACCCAACCAAGGCTTTCAATTGTCTTCAGCAAGCTCTACAAATTGATGGGAGGTTTGCCAAAGCATATCATTTGCGAGGCCTACTGCTGCATGGGATGGGAGAACATAGTAAAGCTATTAAAGAGTTGTCAACTGGGTTGAGTATTGAGAGTGCAAATATTGAGTGTCTGTATTTGCGGGCATCCTGCTACCATGCGATAGGAGAATATAAACCAGCGGTCAAGGACTATGATGCTGTGTTGGATTTGGAACTAGACTCCATGGAGAAGTTTGTGCTGCAATGCCTGGCTTTTTATCAGAAAGAGATTGCTCTGTACACGGCATCAAAACTCAACAGTGAGTTTGTCTGGTTTGATATTGATGGAGATATTGATTCTCTTTTCAAGGAGTACTGGTGCAAAAGATTGCACCCCAAGAATGTTTGCGAAAAGAGTACTGCTCTTCTGCAAGCTGCTGATTGCATTGGGAAGAAAATCCAATATGATTGCCCTGGTTTCTTACCAAATAGGCGACAGCATCGTATGGCAGGATTGGCTGCTATTGAAGTTGCACAGAAGGTTTCAAAAGCGTGGCGTTCCTTTCAAGCGGAATGGAAGTACTCAAATAAAAGCACATCCAAGAATGGCAAGAGACCGAGGAGAAGGGAAAGAATCAATTTGCCAAGCCAGAATAGAGGTGGTGCTGGGTGTAGCACTAGCACCTCCTCAGACTCAACTTCATATGGCATTACGCAGTCAAAATCAACTGGCCGTTTTATGATGTCATGGCATGATGTTTATTCAGTGGCTGTCAAATGGCGGCAGATTTCTGAACCTTGTGACCCGGTTGTGTGGATTAACAAGCTAAGTGAAGAGTTTAATGCTGGATTTGGGTCTCATACACCAATTATCCTTGGACAAGCAAAAGTTGTTCGCTATTTCCCAAATTTTGAAAGGACATTTGATGTTGCAAAGACAATCATGAAGGAAAGAAAATATGTGCATAACAAGTTAGATGGCCTGATTGATCTATCTGGGAAATTGCAAGATGTTATGCATGCAAAATCCTGCGCTGATTTGTACAGGGCTGTTGGTGAGGACTTCTGGTTGGCTACTTGGTGCAATAGTACAGCCTTTGAGGGGAAGTATCTTGAAGGGACAAGGATTACCCTCGGGGAGCAGAGCTATGACTTTGCAATCAGGACACCTTGTACACCTTCTAGATGGGATGAATTTGATGCAGAAATGGCAATGGCATGGGAAGATATATGCAATGCTTATTGCGGTGAAAATTATGGGTCTACTGACTTCAATGTGCTTGAAAAAGTGAGAGATGCAATTTTAAGGATGACATATTACTGGTACAATTTTATGCCCCTTTCAAGAGGATCCGCAGCTGTTGGGTTCGTGGTTATGCTTGGACTACTGCTTGCTGCTAATATGGAGTTCACAGGAATTATCCCTCAAGGTTTACAGGTGGACTGGGAAGCCATTTTGAACGTTGATCCAAACAATTTTGTGGATTCGATCAAGAGTTGGTTATATCCATCTCTCAAGGTAACATCATCCTTGAAAGATTATCCGGATGTGGGATCGACTCTTCAAACAACAGGTTCAGTTGTTGCTGCTCTAAGCACTTATAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

1084

Amino Acids

121.73

Weight (kDa)

6.15

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	398 - 459	1.5e-07	Tetratricopeptide repeat
TPR_1	PF00515	426 - 458	9e-08	Tetratricopeptide repeat
TPR_2	PF07719	426 - 458	6e-06	Tetratricopeptide repeat
TPR_11	PF13414	433 - 472	7e-08	TPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3246
AbsI	CCTCGAGG	1 cut(s)	1583
Acc36I	ACCTGC	1 cut(s)	1130
AccI	GTMKAC	2 cut(s)	101, 2906
AccII	CGCG	3 cut(s)	171, 173, 329
AccIII	TCCGGA	1 cut(s)	3187
AclI	AACGTT	1 cut(s)	3105
AclWI	GGATC	9 cut(s)	83, 603, 1157, 1170, 1578, 2988, 3001, 3104, 3205
AcoI	YGGCCR	2 cut(s)	112, 2374
AcsI	RAATTY	5 cut(s)	1322, 1372, 1576, 2551, 2837
AcuI	CTGAAG	4 cut(s)	299, 739, 924, 1637
AfaI	GTAC	9 cut(s)	592, 1943, 2018, 2062, 2225, 2687, 2734, 2818, 2969
AfiI	CCNNNNNNNGG	5 cut(s)	1000, 1035, 1636, 2745, 3194
AflII	CTTAAG	1 cut(s)	919
AflIII	ACRYGT	1 cut(s)	562
AjnI	CCWGG	3 cut(s)	230, 1911, 2116
AjuI	GAANNNNNNNTTGG	4 cut(s)	239, 271, 1400, 1432
AloI	GAACNNNNNNTCC	2 cut(s)	226, 258
Alw21I	GWGCWC	2 cut(s)	152, 474
Alw26I	GTCTC	2 cut(s)	2251, 2505
AlwI	GGATC	9 cut(s)	83, 603, 1157, 1170, 1578, 2988, 3001, 3104, 3205
AlwNI	CAGNNNCTG	2 cut(s)	1277, 2414
Ama87I	CYCGRG	2 cut(s)	1583, 2777
Aor13HI	TCCGGA	1 cut(s)	3187
AoxI	GGCC	7 cut(s)	112, 702, 1251, 1332, 1705, 2374, 2623
ApoI	RAATTY	5 cut(s)	1322, 1372, 1576, 2551, 2837
AspLEI	GCGC	5 cut(s)	173, 313, 331, 1549, 2678
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	2450
AsuHPI	GGTGA	4 cut(s)	756, 1535, 2711, 2903
AvaI	CYCGRG	2 cut(s)	1583, 2777
AvaII	GGWCC	1 cut(s)	179
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BamHI	GGATCC	2 cut(s)	1162, 2993
BanII	GRGCYC	2 cut(s)	152, 474
BauI	CACGAG	1 cut(s)	1305
BbsI	GAAGAC	2 cut(s)	1449, 1643
Bbv12I	GWGCWC	2 cut(s)	152, 474
BbvCI	CCTCAGC	2 cut(s)	1278, 1539
BccI	CCATC	8 cut(s)	1123, 1276, 1667, 1717, 1982, 2615, 2823, 3160
BceAI	ACGGC	2 cut(s)	1962, 2361
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	3 cut(s)	232, 1913, 2118
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	2450
BcoDI	GTCTC	2 cut(s)	2251, 2505
BfaI	CTAG	6 cut(s)	24, 458, 1145, 1880, 2322, 2826
BfmI	CTRYAG	3 cut(s)	162, 438, 446
BfoI	RGCGCY	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	919
BfuAI	ACCTGC	1 cut(s)	1130
BglII	AGATCT	1 cut(s)	442
BmcAI	AGTACT	3 cut(s)	2018, 2062, 2225
Bme1390I	CCNGG	4 cut(s)	232, 1913, 2118, 2450
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	2 cut(s)	1583, 2777
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	244, 1164, 2995
BmrFI	CCNGG	4 cut(s)	232, 1913, 2118, 2450
BmrI	ACTGGG	3 cut(s)	1600, 1770, 3097
BmsI	GCATC	9 cut(s)	379, 797, 920, 1817, 1849, 1958, 2152, 2833, 2929
BmuI	ACTGGG	3 cut(s)	1600, 1770, 3097
BpiI	GAAGAC	2 cut(s)	1449, 1643
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 2050, 2082
Bpu10I	CCTNAGC	2 cut(s)	1278, 1539
BpuEI	CTTGAG	2 cut(s)	3054, 3143
BpuMI	CCSGG	1 cut(s)	2450
BsaI	GGTCTC	2 cut(s)	2251, 2505
BsaWI	WCCGGW	1 cut(s)	3187
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 2006, 2036
Bsc4I	CCNNNNNNNGG	5 cut(s)	1000, 1035, 1636, 2745, 3194
Bse1I	ACTGG	9 cut(s)	181, 216, 1080, 1606, 1765, 2024, 2377, 2969, 3092
Bse3DI	GCAATG	6 cut(s)	691, 817, 1030, 1913, 2862, 2884
BseAI	TCCGGA	1 cut(s)	3187
BseBI	CCWGG	3 cut(s)	232, 1913, 2118
BseGI	GGATG	9 cut(s)	345, 394, 1728, 1808, 2240, 2839, 2958, 3170, 3196
BseLI	CCNNNNNNNGG	5 cut(s)	1000, 1035, 1636, 2745, 3194
BseMI	GCAATG	6 cut(s)	691, 817, 1030, 1913, 2862, 2884
BseMII	CTCAG	5 cut(s)	642, 768, 1269, 1530, 2346
BseNI	ACTGG	9 cut(s)	181, 216, 1080, 1606, 1765, 2024, 2377, 2969, 3092
BseRI	GAGGAG	4 cut(s)	199, 1556, 2278, 2320
BseYI	CCCAGC	1 cut(s)	2309
BsgI	GTGCAG	2 cut(s)	263, 1616
Bsh1236I	CGCG	3 cut(s)	171, 173, 329
BshFI	GGCC	7 cut(s)	114, 704, 1253, 1334, 1707, 2376, 2625
BsiHKAI	GWGCWC	2 cut(s)	152, 474
BsiHKCI	CYCGRG	2 cut(s)	1583, 2777
BsiSI	CCGG	3 cut(s)	111, 2450, 3188
BslFI	GGGAC	2 cut(s)	897, 2776
BslI	CCNNNNNNNGG	5 cut(s)	1000, 1035, 1636, 2745, 3194
BsmAI	GTCTC	2 cut(s)	2251, 2505
BsmFI	GGGAC	2 cut(s)	897, 2776
BsnI	GGCC	7 cut(s)	114, 704, 1253, 1334, 1707, 2376, 2625
Bso31I	GGTCTC	2 cut(s)	2251, 2505
BsoBI	CYCGRG	2 cut(s)	1583, 2777
Bsp1286I	GDGCHC	2 cut(s)	152, 474
Bsp13I	TCCGGA	1 cut(s)	3187
Bsp1407I	TGTACA	3 cut(s)	1941, 2685, 2816
Bsp19I	CCATGG	2 cut(s)	1254, 1887
BspANI	GGCC	7 cut(s)	114, 704, 1253, 1334, 1707, 2376, 2625
BspCNI	CTCAG	5 cut(s)	643, 769, 1270, 1531, 2345
BspEI	TCCGGA	1 cut(s)	3187
BspFNI	CGCG	3 cut(s)	171, 173, 329
BspHI	TCATGA	3 cut(s)	871, 1390, 2586
BspLI	GGNNCC	3 cut(s)	244, 1164, 2995
BspMAI	CTGCAG	3 cut(s)	166, 442, 450
BspMI	ACCTGC	1 cut(s)	1130
BspPI	GGATC	9 cut(s)	83, 603, 1157, 1170, 1578, 2988, 3001, 3104, 3205
BspQI	GCTCTTC	2 cut(s)	1129, 2073
BspTI	CTTAAG	1 cut(s)	919
BspTNI	GGTCTC	2 cut(s)	2251, 2505
BsrDI	GCAATG	6 cut(s)	691, 817, 1030, 1913, 2862, 2884
BsrGI	TGTACA	3 cut(s)	1941, 2685, 2816
BsrI	ACTGG	9 cut(s)	181, 216, 1080, 1606, 1765, 2024, 2377, 2969, 3092
BssSI	CACGAG	1 cut(s)	1305
BssT1I	CCWWGG	6 cut(s)	182, 1254, 1315, 1635, 1887, 2518
Bst2BI	CACGAG	1 cut(s)	1305
Bst2UI	CCWGG	3 cut(s)	232, 1913, 2118
Bst4CI	ACNGT	1 cut(s)	1964
Bst6I	CTCTTC	6 cut(s)	228, 1129, 1186, 2073, 2472, 3210
BstAFI	CTTAAG	1 cut(s)	919
BstAPI	GCANNNNNTGC	3 cut(s)	368, 454, 1310
BstAUI	TGTACA	3 cut(s)	1941, 2685, 2816
BstC8I	GCNNGC	9 cut(s)	152, 169, 423, 1302, 1659, 1806, 2076, 2664, 3036
BstDEI	CTNAG	7 cut(s)	651, 777, 1278, 1539, 2332, 2471, 3236
BstDSI	CCRYGG	2 cut(s)	1254, 1887
BstF5I	GGATG	9 cut(s)	345, 394, 1728, 1808, 2240, 2839, 2958, 3170, 3196
BstFNI	CGCG	3 cut(s)	171, 173, 329
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	5 cut(s)	173, 313, 331, 1549, 2678
BstMAI	GTCTC	2 cut(s)	2251, 2505
BstNI	CCWGG	3 cut(s)	232, 1913, 2118
BstNSI	RCATGY	5 cut(s)	290, 425, 566, 912, 2666
BstSCI	CCNGG	4 cut(s)	230, 1911, 2116, 2448
BstSFI	CTRYAG	3 cut(s)	162, 438, 446
BstUI	CGCG	3 cut(s)	171, 173, 329
BstV2I	GAAGAC	2 cut(s)	1449, 1643
BstX2I	RGATCY	3 cut(s)	442, 1162, 2993
BstXI	CCANNNNNNTGG	1 cut(s)	737
BstYI	RGATCY	3 cut(s)	442, 1162, 2993
BsuRI	GGCC	7 cut(s)	114, 704, 1253, 1334, 1707, 2376, 2625
BtgI	CCRYGG	2 cut(s)	1254, 1887
BtsCI	GGATG	9 cut(s)	345, 394, 1728, 1808, 2240, 2839, 2958, 3170, 3196
BtsIMutI	CAGTG	3 cut(s)	763, 1969, 2415
BveI	ACCTGC	1 cut(s)	1130
Cac8I	GCNNGC	9 cut(s)	152, 169, 423, 1302, 1659, 1806, 2076, 2664, 3036
CaiI	CAGNNNCTG	2 cut(s)	1277, 2414
CciI	TCATGA	3 cut(s)	871, 1390, 2586
CfoI	GCGC	5 cut(s)	173, 313, 331, 1549, 2678
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	9 cut(s)	591, 1942, 2017, 2061, 2224, 2686, 2733, 2817, 2968
CviQI	GTAC	9 cut(s)	591, 1942, 2017, 2061, 2224, 2686, 2733, 2817, 2968
DdeI	CTNAG	7 cut(s)	651, 777, 1278, 1539, 2332, 2471, 3236
DraI	TTTAAA	1 cut(s)	1554
EaeI	YGGCCR	2 cut(s)	112, 2374
Eam1104I	CTCTTC	6 cut(s)	228, 1129, 1186, 2073, 2472, 3210
EarI	CTCTTC	6 cut(s)	228, 1129, 1186, 2073, 2472, 3210
Ecl136II	GAGCTC	2 cut(s)	150, 472
Eco130I	CCWWGG	6 cut(s)	182, 1254, 1315, 1635, 1887, 2518
Eco147I	AGGCCT	1 cut(s)	1707
Eco24I	GRGCYC	2 cut(s)	152, 474
Eco31I	GGTCTC	2 cut(s)	2251, 2505
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	2 cut(s)	150, 472
Eco57I	CTGAAG	4 cut(s)	299, 739, 924, 1637
Eco88I	CYCGRG	2 cut(s)	1583, 2777
EcoICRI	GAGCTC	2 cut(s)	150, 472
EcoRII	CCWGG	3 cut(s)	230, 1911, 2116
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	6 cut(s)	182, 1254, 1315, 1635, 1887, 2518
EcoT22I	ATGCAT	2 cut(s)	427, 2664
EcoT38I	GRGCYC	2 cut(s)	152, 474
ErhI	CCWWGG	6 cut(s)	182, 1254, 1315, 1635, 1887, 2518
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FaqI	GGGAC	2 cut(s)	897, 2776
FauI	CCCGC	2 cut(s)	334, 1797
FauNDI	CATATG	3 cut(s)	680, 1204, 2347
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	2 cut(s)	101, 2906
FokI	GGATG	9 cut(s)	332, 401, 1735, 1795, 2227, 2846, 2965, 3157, 3203
FriOI	GRGCYC	2 cut(s)	152, 474
FspBI	CTAG	6 cut(s)	24, 458, 1145, 1880, 2322, 2826
GlaI	GCGC	5 cut(s)	172, 312, 330, 1548, 2677
GsaI	CCCAGC	1 cut(s)	2313
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	7 cut(s)	114, 704, 1253, 1334, 1707, 2376, 2625
HapII	CCGG	3 cut(s)	111, 2450, 3188
HhaI	GCGC	5 cut(s)	173, 313, 331, 1549, 2678
Hin6I	GCGC	5 cut(s)	171, 311, 329, 1547, 2676
HinP1I	GCGC	5 cut(s)	171, 311, 329, 1547, 2676
HincII	GTYRAC	1 cut(s)	1758
HindII	GTYRAC	1 cut(s)	1758
HindIII	AAGCTT	2 cut(s)	339, 719
HpaII	CCGG	3 cut(s)	111, 2450, 3188
HphI	GGTGA	4 cut(s)	756, 1535, 2711, 2903
Hpy166II	GTNNAC	9 cut(s)	102, 503, 1758, 1944, 2819, 2907, 3054, 3077, 3085
Hpy8I	GTNNAC	9 cut(s)	102, 503, 1758, 1944, 2819, 2907, 3054, 3077, 3085
HpyCH4III	ACNGT	1 cut(s)	1964
HpyCH4IV	ACGT	2 cut(s)	430, 3105
HpyF3I	CTNAG	7 cut(s)	651, 777, 1278, 1539, 2332, 2471, 3236
HpySE526I	ACGT	2 cut(s)	430, 3105
HspAI	GCGC	5 cut(s)	171, 311, 329, 1547, 2676
Kpn2I	TCCGGA	1 cut(s)	3187
Ksp22I	TGATCA	1 cut(s)	613
LguI	GCTCTTC	2 cut(s)	1129, 2073
LmnI	GCTCC	4 cut(s)	113, 212, 406, 2782
LweI	GCATC	9 cut(s)	379, 797, 920, 1817, 1849, 1958, 2152, 2833, 2929
MaeI	CTAG	6 cut(s)	24, 458, 1145, 1880, 2322, 2826
MaeII	ACGT	2 cut(s)	430, 3105
MaeIII	GTNAC	3 cut(s)	260, 2444, 3163
MfeI	CAATTG	4 cut(s)	452, 480, 887, 1645
MflI	RGATCY	3 cut(s)	442, 1162, 2993
MhlI	GDGCHC	2 cut(s)	152, 474
MlyI	GAGTC	9 cut(s)	107, 152, 196, 203, 785, 893, 1877, 2330, 3196
MmeI	TCCRAC	3 cut(s)	270, 1237, 1848
Mph1103I	ATGCAT	2 cut(s)	427, 2664
MroI	TCCGGA	1 cut(s)	3187
MseI	TTAA	8 cut(s)	920, 999, 1040, 1553, 1746, 2463, 2484, 2948
MslI	CAYNNNNRTG	2 cut(s)	285, 567
MspA1I	CMGCKG	5 cut(s)	82, 1274, 1567, 1844, 3002
MspCI	CTTAAG	1 cut(s)	919
MspI	CCGG	3 cut(s)	111, 2450, 3188
MspR9I	CCNGG	4 cut(s)	232, 1913, 2118, 2450
MunI	CAATTG	4 cut(s)	452, 480, 887, 1645
MvaI	CCWGG	3 cut(s)	232, 1913, 2118
MvnI	CGCG	3 cut(s)	171, 173, 329
NciI	CCSGG	1 cut(s)	2450
NcoI	CCATGG	2 cut(s)	1254, 1887
NdeI	CATATG	3 cut(s)	680, 1204, 2347
NlaIV	GGNNCC	3 cut(s)	244, 1164, 2995
NmuCI	GTSAC	1 cut(s)	2444
NsiI	ATGCAT	2 cut(s)	427, 2664
NspI	RCATGY	5 cut(s)	290, 425, 566, 912, 2666
PaeI	GCATGC	2 cut(s)	425, 2666
PaeR7I	CTCGAG	1 cut(s)	1583
PagI	TCATGA	3 cut(s)	871, 1390, 2586
PceI	AGGCCT	1 cut(s)	1707
PciI	ACATGT	1 cut(s)	562
PciSI	GCTCTTC	2 cut(s)	1129, 2073
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	7 cut(s)	551, 635, 655, 761, 2000, 2277, 3128
PfoI	TCCNGGA	1 cut(s)	230
PleI	GAGTC	9 cut(s)	106, 151, 196, 202, 785, 893, 1877, 2330, 3196
PpsI	GAGTC	9 cut(s)	106, 151, 196, 202, 785, 893, 1877, 2330, 3196
PscI	ACATGT	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	3246
Psp124BI	GAGCTC	2 cut(s)	152, 474
Psp1406I	AACGTT	1 cut(s)	3105
Psp6I	CCWGG	3 cut(s)	230, 1911, 2116
PspFI	CCCAGC	1 cut(s)	2309
PspGI	CCWGG	3 cut(s)	230, 1911, 2116
PspN4I	GGNNCC	3 cut(s)	244, 1164, 2995
PspPI	GGNCC	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	1583
PstI	CTGCAG	3 cut(s)	166, 442, 450
PstNI	CAGNNNCTG	2 cut(s)	1277, 2414
PsuI	RGATCY	3 cut(s)	442, 1162, 2993
PvuII	CAGCTG	3 cut(s)	1274, 1567, 3002
RsaI	GTAC	9 cut(s)	592, 1943, 2018, 2062, 2225, 2687, 2734, 2818, 2969
RsaNI	GTAC	9 cut(s)	591, 1942, 2017, 2061, 2224, 2686, 2733, 2817, 2968
RseI	CAYNNNNRTG	2 cut(s)	285, 567
SacI	GAGCTC	2 cut(s)	152, 474
SapI	GCTCTTC	2 cut(s)	1129, 2073
SaqAI	TTAA	8 cut(s)	920, 999, 1040, 1553, 1746, 2463, 2484, 2948
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	3 cut(s)	2018, 2062, 2225
SchI	GAGTC	9 cut(s)	107, 152, 196, 203, 785, 893, 1877, 2330, 3196
ScrFI	CCNGG	4 cut(s)	232, 1913, 2118, 2450
SduI	GDGCHC	2 cut(s)	152, 474
SfaNI	GCATC	9 cut(s)	379, 797, 920, 1817, 1849, 1958, 2152, 2833, 2929
SfcI	CTRYAG	3 cut(s)	162, 438, 446
Sfr274I	CTCGAG	1 cut(s)	1583
SinI	GGWCC	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	1583
SmiMI	CAYNNNNRTG	2 cut(s)	285, 567
SmlI	CTYRAG	4 cut(s)	919, 1583, 3069, 3158
SmoI	CTYRAG	4 cut(s)	919, 1583, 3069, 3158
SphI	GCATGC	2 cut(s)	425, 2666
SseBI	AGGCCT	1 cut(s)	1707
SspI	AATATT	1 cut(s)	1786
SspMI	CTAG	6 cut(s)	24, 458, 1145, 1880, 2322, 2826
SstI	GAGCTC	2 cut(s)	152, 474
StuI	AGGCCT	1 cut(s)	1707
StyD4I	CCNGG	4 cut(s)	230, 1911, 2116, 2448
StyI	CCWWGG	6 cut(s)	182, 1254, 1315, 1635, 1887, 2518
TaaI	ACNGT	1 cut(s)	1964
TaiI	ACGT	2 cut(s)	433, 3108
TaqI	TCGA	9 cut(s)	87, 146, 200, 321, 1127, 1349, 1584, 3131, 3200
TaqII	GACCGA	1 cut(s)	2275
TatI	WGTACW	7 cut(s)	1941, 2016, 2060, 2223, 2685, 2732, 2816
TauI	GCSGC	2 cut(s)	82, 2428
TfiI	GAWTC	7 cut(s)	551, 635, 655, 761, 2000, 2277, 3128
Tru1I	TTAA	8 cut(s)	920, 999, 1040, 1553, 1746, 2463, 2484, 2948
Tru9I	TTAA	8 cut(s)	920, 999, 1040, 1553, 1746, 2463, 2484, 2948
TscAI	CASTG	3 cut(s)	763, 1969, 2415
TseFI	GTSAC	1 cut(s)	2444
Tsp45I	GTSAC	1 cut(s)	2444
TspGWI	ACGGA	3 cut(s)	81, 608, 1306
TspRI	CASTG	3 cut(s)	763, 1969, 2415
Vha464I	CTTAAG	1 cut(s)	919
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	5 cut(s)	1322, 1372, 1576, 2551, 2837
XbaI	TCTAGA	3 cut(s)	23, 1144, 2825
XceI	RCATGY	5 cut(s)	290, 425, 566, 912, 2666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2300
XhoI	CTCGAG	1 cut(s)	1583
XmiI	GTMKAC	2 cut(s)	101, 2906
XspI	CTAG	6 cut(s)	24, 458, 1145, 1880, 2322, 2826
ZrmI	AGTACT	3 cut(s)	2018, 2062, 2225
Zsp2I	ATGCAT	2 cut(s)	427, 2664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.