Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G37460 AT4G37460 |
| fragaria_vesca | FvH4_1g17100 FvH4_1g17100 FvH4_1g17100 |
| malus_domestica | MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1 |
| prunus_persica | Prupe.6G225100_v2.0.a1 |
| pyrus_communis | pycom02g14710 pycom15g25540 |
| rosa_chinensis | RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271 |
| rosa_laevigata | RLG00000017566 |
| rosa_roxburghii | Rroxscaffold_2G00136490 Rroxscaffold_5G00354870 |
| rosa_rugosa | Rorug02G0141400 Rorug02G0141400 |
| rosa_samantha | Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800 |
| rosa_wichuraiana | Rw2G015210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 541 |
| AccI | GTMKAC | 1 cut(s) | 1130 |
| AccIII | TCCGGA | 1 cut(s) | 1534 |
| AciI | CCGC | 6 cut(s) | 127, 167, 614, 708, 832, 1311 |
| AclWI | GGATC | 5 cut(s) | 34, 913, 916, 1333, 1526 |
| AcoI | YGGCCR | 1 cut(s) | 1629 |
| AcsI | RAATTY | 4 cut(s) | 290, 958, 1259, 1334 |
| AcuI | CTGAAG | 2 cut(s) | 720, 1601 |
| AcyI | GRCGYC | 1 cut(s) | 538 |
| AfaI | GTAC | 4 cut(s) | 341, 724, 1147, 1391 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 673, 1053, 1158 |
| AgeI | ACCGGT | 1 cut(s) | 1637 |
| AgsI | TTSAA | 9 cut(s) | 334, 415, 489, 591, 649, 1172, 1248, 1349, 1410 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 167 |
| AjnI | CCWGG | 3 cut(s) | 517, 1046, 1595 |
| AluBI | AGCT | 7 cut(s) | 202, 479, 732, 821, 877, 1292, 1424 |
| AluI | AGCT | 7 cut(s) | 202, 479, 732, 821, 877, 1292, 1424 |
| Alw21I | GWGCWC | 2 cut(s) | 192, 1664 |
| Alw26I | GTCTC | 1 cut(s) | 734 |
| AlwI | GGATC | 5 cut(s) | 34, 913, 916, 1333, 1526 |
| Aor13HI | TCCGGA | 1 cut(s) | 1534 |
| AoxI | GGCC | 2 cut(s) | 664, 1629 |
| ApeKI | GCWGC | 7 cut(s) | 57, 464, 479, 563, 1421, 1460, 1652 |
| ApoI | RAATTY | 4 cut(s) | 290, 958, 1259, 1334 |
| AsiGI | ACCGGT | 1 cut(s) | 1637 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1518 |
| AsuHPI | GGTGA | 4 cut(s) | 973, 1124, 1325, 1330 |
| BalI | TGGCCA | 1 cut(s) | 1631 |
| BbsI | GAAGAC | 1 cut(s) | 1565 |
| Bbv12I | GWGCWC | 2 cut(s) | 192, 1664 |
| BbvI | GCAGC | 7 cut(s) | 69, 451, 466, 550, 1433, 1447, 1639 |
| BccI | CCATC | 2 cut(s) | 305, 1046 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1130, 1164 |
| BciT130I | CCWGG | 3 cut(s) | 519, 1048, 1597 |
| BciVI | GTATCC | 1 cut(s) | 1581 |
| BcoDI | GTCTC | 1 cut(s) | 734 |
| BfaI | CTAG | 3 cut(s) | 203, 693, 1190 |
| BfmI | CTRYAG | 1 cut(s) | 1419 |
| BfuI | GTATCC | 1 cut(s) | 1581 |
| BisI | GCNGC | 8 cut(s) | 58, 465, 480, 564, 833, 1422, 1461, 1653 |
| BlsI | GCNGC | 8 cut(s) | 59, 466, 481, 565, 834, 1423, 1462, 1654 |
| BmcAI | AGTACT | 2 cut(s) | 341, 1147 |
| Bme1390I | CCNGG | 3 cut(s) | 519, 1048, 1597 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 167 |
| BmrFI | CCNGG | 3 cut(s) | 519, 1048, 1597 |
| BmsI | GCATC | 6 cut(s) | 140, 281, 553, 1174, 1255, 1351 |
| BpiI | GAAGAC | 1 cut(s) | 1565 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 191, 223 |
| BsaBI | GATNNNNATC | 1 cut(s) | 904 |
| BsaHI | GRCGYC | 1 cut(s) | 538 |
| BsaI | GGTCTC | 1 cut(s) | 734 |
| BsaJI | CCNNGG | 4 cut(s) | 148, 925, 984, 1047 |
| BsaWI | WCCGGW | 2 cut(s) | 1534, 1637 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 329, 359 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 673, 1053, 1158 |
| Bse118I | RCCGGY | 1 cut(s) | 1637 |
| Bse1I | ACTGG | 2 cut(s) | 88, 347 |
| Bse3DI | GCAATG | 2 cut(s) | 236, 1306 |
| Bse8I | GATNNNNATC | 1 cut(s) | 904 |
| BseAI | TCCGGA | 1 cut(s) | 1534 |
| BseBI | CCWGG | 3 cut(s) | 519, 1048, 1597 |
| BseDI | CCNNGG | 4 cut(s) | 148, 925, 984, 1047 |
| BseGI | GGATG | 6 cut(s) | 131, 1057, 1261, 1380, 1592, 1606 |
| BseJI | GATNNNNATC | 1 cut(s) | 904 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 673, 1053, 1158 |
| BseMI | GCAATG | 2 cut(s) | 236, 1306 |
| BseMII | CTCAG | 1 cut(s) | 1649 |
| BseNI | ACTGG | 2 cut(s) | 88, 347 |
| BseXI | GCAGC | 7 cut(s) | 69, 451, 466, 550, 1433, 1447, 1639 |
| BsgI | GTGCAG | 1 cut(s) | 765 |
| BshFI | GGCC | 2 cut(s) | 666, 1631 |
| BshTI | ACCGGT | 1 cut(s) | 1637 |
| BsiHKAI | GWGCWC | 2 cut(s) | 192, 1664 |
| BsiSI | CCGG | 3 cut(s) | 667, 1535, 1638 |
| BslFI | GGGAC | 1 cut(s) | 1189 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 673, 1053, 1158 |
| BsmAI | GTCTC | 1 cut(s) | 734 |
| BsmFI | GGGAC | 1 cut(s) | 1189 |
| BsnI | GGCC | 2 cut(s) | 666, 1631 |
| Bso31I | GGTCTC | 1 cut(s) | 734 |
| Bsp1286I | GDGCHC | 2 cut(s) | 192, 1664 |
| Bsp13I | TCCGGA | 1 cut(s) | 1534 |
| Bsp143I | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| BspACI | CCGC | 6 cut(s) | 127, 167, 614, 708, 832, 1311 |
| BspANI | GGCC | 2 cut(s) | 666, 1631 |
| BspCNI | CTCAG | 1 cut(s) | 1650 |
| BspEI | TCCGGA | 1 cut(s) | 1534 |
| BspMAI | CTGCAG | 1 cut(s) | 1423 |
| BspPI | GGATC | 5 cut(s) | 34, 913, 916, 1333, 1526 |
| BspQI | GCTCTTC | 2 cut(s) | 474, 739 |
| BspTNI | GGTCTC | 1 cut(s) | 734 |
| BsrDI | GCAATG | 2 cut(s) | 236, 1306 |
| BsrFI | RCCGGY | 1 cut(s) | 1637 |
| BsrI | ACTGG | 2 cut(s) | 88, 347 |
| BssAI | RCCGGY | 1 cut(s) | 1637 |
| BssECI | CCNNGG | 4 cut(s) | 148, 925, 984, 1047 |
| BssMI | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| BssNI | GRCGYC | 1 cut(s) | 538 |
| BssT1I | CCWWGG | 3 cut(s) | 148, 925, 984 |
| Bst2UI | CCWGG | 3 cut(s) | 519, 1048, 1597 |
| Bst4CI | ACNGT | 5 cut(s) | 287, 515, 786, 849, 1342 |
| Bst6I | CTCTTC | 3 cut(s) | 474, 739, 879 |
| BstACI | GRCGYC | 1 cut(s) | 538 |
| BstC8I | GCNNGC | 3 cut(s) | 129, 477, 1077 |
| BstDEI | CTNAG | 3 cut(s) | 363, 878, 1658 |
| BstF5I | GGATG | 6 cut(s) | 131, 1057, 1261, 1380, 1592, 1606 |
| BstKTI | GATC | 7 cut(s) | 29, 908, 924, 1007, 1328, 1534, 1606 |
| BstMAI | GTCTC | 1 cut(s) | 734 |
| BstMBI | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 19, 560, 1274, 1289 |
| BstNI | CCWGG | 3 cut(s) | 519, 1048, 1597 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSCI | CCNGG | 3 cut(s) | 517, 1046, 1595 |
| BstSFI | CTRYAG | 1 cut(s) | 1419 |
| BstV1I | GCAGC | 7 cut(s) | 69, 451, 466, 550, 1433, 1447, 1639 |
| BstV2I | GAAGAC | 1 cut(s) | 1565 |
| BstX2I | RGATCY | 3 cut(s) | 26, 905, 1325 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 149 |
| BstYI | RGATCY | 3 cut(s) | 26, 905, 1325 |
| BsuI | GTATCC | 1 cut(s) | 1581 |
| BsuRI | GGCC | 2 cut(s) | 666, 1631 |
| BtsCI | GGATG | 6 cut(s) | 131, 1057, 1261, 1380, 1592, 1606 |
| BtsIMutI | CAGTG | 2 cut(s) | 292, 1089 |
| Cac8I | GCNNGC | 3 cut(s) | 129, 477, 1077 |
| Cfr10I | RCCGGY | 1 cut(s) | 1637 |
| CseI | GACGC | 1 cut(s) | 191 |
| Csp6I | GTAC | 4 cut(s) | 340, 723, 1146, 1390 |
| CspAI | ACCGGT | 1 cut(s) | 1637 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 599, 634 |
| CviAII | CATG | 6 cut(s) | 143, 164, 597, 798, 803, 1284 |
| CviQI | GTAC | 4 cut(s) | 340, 723, 1146, 1390 |
| DdeI | CTNAG | 3 cut(s) | 363, 878, 1658 |
| DpnI | GATC | 7 cut(s) | 28, 907, 923, 1006, 1327, 1533, 1605 |
| DpnII | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| DraI | TTTAAA | 1 cut(s) | 964 |
| DriI | GACNNNNNGTC | 1 cut(s) | 167 |
| EaeI | YGGCCR | 1 cut(s) | 1629 |
| Eam1104I | CTCTTC | 3 cut(s) | 474, 739, 879 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 167 |
| EarI | CTCTTC | 3 cut(s) | 474, 739, 879 |
| Eco130I | CCWWGG | 3 cut(s) | 148, 925, 984 |
| Eco31I | GGTCTC | 1 cut(s) | 734 |
| Eco57I | CTGAAG | 2 cut(s) | 720, 1601 |
| EcoRI | GAATTC | 1 cut(s) | 1334 |
| EcoRII | CCWGG | 3 cut(s) | 517, 1046, 1595 |
| EcoT14I | CCWWGG | 3 cut(s) | 148, 925, 984 |
| ErhI | CCWWGG | 3 cut(s) | 148, 925, 984 |
| FaeI | CATG | 6 cut(s) | 146, 167, 600, 801, 806, 1287 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 718, 750 |
| FaqI | GGGAC | 1 cut(s) | 1189 |
| FatI | CATG | 6 cut(s) | 142, 163, 596, 797, 802, 1283 |
| FauI | CCCGC | 1 cut(s) | 120 |
| FauNDI | CATATG | 2 cut(s) | 754, 1009 |
| FblI | GTMKAC | 1 cut(s) | 1130 |
| Fnu4HI | GCNGC | 8 cut(s) | 58, 465, 480, 564, 833, 1422, 1461, 1653 |
| FokI | GGATG | 6 cut(s) | 118, 1064, 1268, 1387, 1579, 1593 |
| Fsp4HI | GCNGC | 8 cut(s) | 58, 465, 480, 564, 833, 1422, 1461, 1653 |
| FspBI | CTAG | 3 cut(s) | 203, 693, 1190 |
| GluI | GCNGC | 8 cut(s) | 58, 465, 480, 564, 833, 1422, 1461, 1653 |
| HaeIII | GGCC | 2 cut(s) | 666, 1631 |
| HapII | CCGG | 3 cut(s) | 667, 1535, 1638 |
| HgaI | GACGC | 1 cut(s) | 191 |
| Hin1I | GRCGYC | 1 cut(s) | 538 |
| Hin1II | CATG | 6 cut(s) | 146, 167, 600, 801, 806, 1287 |
| HincII | GTYRAC | 2 cut(s) | 81, 1587 |
| HindII | GTYRAC | 2 cut(s) | 81, 1587 |
| HinfI | GANTC | 9 cut(s) | 46, 206, 279, 323, 407, 485, 532, 767, 1538 |
| HpaII | CCGG | 3 cut(s) | 667, 1535, 1638 |
| HphI | GGTGA | 4 cut(s) | 973, 1124, 1325, 1330 |
| Hpy166II | GTNNAC | 4 cut(s) | 81, 1131, 1499, 1587 |
| Hpy188I | TCNGA | 9 cut(s) | 249, 739, 844, 1229, 1448, 1524, 1531, 1581, 1659 |
| Hpy188III | TCNNGA | 5 cut(s) | 276, 1169, 1410, 1535, 1610 |
| Hpy8I | GTNNAC | 4 cut(s) | 81, 1131, 1499, 1587 |
| Hpy99I | CGWCG | 2 cut(s) | 185, 540 |
| HpyAV | CCTTC | 9 cut(s) | 412, 454, 489, 616, 666, 991, 1166, 1254, 1273 |
| HpyCH4III | ACNGT | 5 cut(s) | 287, 515, 786, 849, 1342 |
| HpyCH4IV | ACGT | 2 cut(s) | 538, 1379 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 19, 560, 1274, 1289 |
| HpyF3I | CTNAG | 3 cut(s) | 363, 878, 1658 |
| HpySE526I | ACGT | 2 cut(s) | 538, 1379 |
| Hsp92I | GRCGYC | 1 cut(s) | 538 |
| Hsp92II | CATG | 6 cut(s) | 146, 167, 600, 801, 806, 1287 |
| Kpn2I | TCCGGA | 1 cut(s) | 1534 |
| Kzo9I | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| LguI | GCTCTTC | 2 cut(s) | 474, 739 |
| LmnI | GCTCC | 1 cut(s) | 199 |
| Lsp1109I | GCAGC | 7 cut(s) | 69, 451, 466, 550, 1433, 1447, 1639 |
| LweI | GCATC | 6 cut(s) | 140, 281, 553, 1174, 1255, 1351 |
| MaeI | CTAG | 3 cut(s) | 203, 693, 1190 |
| MaeII | ACGT | 2 cut(s) | 538, 1379 |
| MaeIII | GTNAC | 2 cut(s) | 448, 979 |
| MalI | GATC | 7 cut(s) | 28, 907, 923, 1006, 1327, 1533, 1605 |
| MboI | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| MboII | GAAGA | 5 cut(s) | 427, 461, 726, 896, 1570 |
| MfeI | CAATTG | 1 cut(s) | 489 |
| MflI | RGATCY | 3 cut(s) | 26, 905, 1325 |
| MhlI | GDGCHC | 2 cut(s) | 192, 1664 |
| MlsI | TGGCCA | 1 cut(s) | 1631 |
| MluNI | TGGCCA | 1 cut(s) | 1631 |
| MlyI | GAGTC | 2 cut(s) | 200, 1532 |
| Mox20I | TGGCCA | 1 cut(s) | 1631 |
| MroI | TCCGGA | 1 cut(s) | 1534 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1518 |
| MscI | TGGCCA | 1 cut(s) | 1631 |
| MseI | TTAA | 7 cut(s) | 69, 684, 870, 891, 963, 1370, 1548 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1611 |
| Msp20I | TGGCCA | 1 cut(s) | 1631 |
| MspA1I | CMGCKG | 1 cut(s) | 1424 |
| MspI | CCGG | 3 cut(s) | 667, 1535, 1638 |
| MspR9I | CCNGG | 3 cut(s) | 519, 1048, 1597 |
| MunI | CAATTG | 1 cut(s) | 489 |
| MvaI | CCWGG | 3 cut(s) | 519, 1048, 1597 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 19, 560, 1274, 1289 |
| NdeI | CATATG | 2 cut(s) | 754, 1009 |
| NdeII | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| NlaIII | CATG | 6 cut(s) | 146, 167, 600, 801, 806, 1287 |
| NmuCI | GTSAC | 1 cut(s) | 979 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 2 cut(s) | 474, 739 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 189, 544 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1518 |
| PfeI | GAWTC | 7 cut(s) | 46, 279, 323, 407, 485, 532, 767 |
| PfoI | TCCNGGA | 1 cut(s) | 1595 |
| PinAI | ACCGGT | 1 cut(s) | 1637 |
| PkrI | GCNGC | 8 cut(s) | 59, 466, 481, 565, 834, 1423, 1462, 1654 |
| PleI | GAGTC | 2 cut(s) | 200, 1532 |
| PpsI | GAGTC | 2 cut(s) | 200, 1532 |
| Psp6I | CCWGG | 3 cut(s) | 517, 1046, 1595 |
| PspGI | CCWGG | 3 cut(s) | 517, 1046, 1595 |
| PstI | CTGCAG | 1 cut(s) | 1423 |
| PsuI | RGATCY | 3 cut(s) | 26, 905, 1325 |
| PvuII | CAGCTG | 1 cut(s) | 1424 |
| RsaI | GTAC | 4 cut(s) | 341, 724, 1147, 1391 |
| RsaNI | GTAC | 4 cut(s) | 340, 723, 1146, 1390 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1611 |
| SapI | GCTCTTC | 2 cut(s) | 474, 739 |
| SaqAI | TTAA | 7 cut(s) | 69, 684, 870, 891, 963, 1370, 1548 |
| SatI | GCNGC | 8 cut(s) | 58, 465, 480, 564, 833, 1422, 1461, 1653 |
| Sau3AI | GATC | 7 cut(s) | 26, 905, 921, 1004, 1325, 1531, 1603 |
| ScaI | AGTACT | 2 cut(s) | 341, 1147 |
| SchI | GAGTC | 2 cut(s) | 200, 1532 |
| ScrFI | CCNGG | 3 cut(s) | 519, 1048, 1597 |
| SduI | GDGCHC | 2 cut(s) | 192, 1664 |
| SfaNI | GCATC | 6 cut(s) | 140, 281, 553, 1174, 1255, 1351 |
| SfcI | CTRYAG | 1 cut(s) | 1419 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1611 |
| SsiI | CCGC | 6 cut(s) | 127, 167, 614, 708, 832, 1311 |
| SspI | AATATT | 2 cut(s) | 109, 626 |
| SspMI | CTAG | 3 cut(s) | 203, 693, 1190 |
| StyD4I | CCNGG | 3 cut(s) | 517, 1046, 1595 |
| StyI | CCWWGG | 3 cut(s) | 148, 925, 984 |
| TaaI | ACNGT | 5 cut(s) | 287, 515, 786, 849, 1342 |
| TaiI | ACGT | 2 cut(s) | 541, 1382 |
| TaqI | TCGA | 6 cut(s) | 192, 388, 535, 815, 1026, 1553 |
| TatI | WGTACW | 3 cut(s) | 339, 722, 1145 |
| TauI | GCSGC | 1 cut(s) | 835 |
| TfiI | GAWTC | 7 cut(s) | 46, 279, 323, 407, 485, 532, 767 |
| Tru1I | TTAA | 7 cut(s) | 69, 684, 870, 891, 963, 1370, 1548 |
| Tru9I | TTAA | 7 cut(s) | 69, 684, 870, 891, 963, 1370, 1548 |
| TscAI | CASTG | 2 cut(s) | 292, 1096 |
| TseFI | GTSAC | 1 cut(s) | 979 |
| TseI | GCWGC | 7 cut(s) | 57, 464, 479, 563, 1421, 1460, 1652 |
| Tsp45I | GTSAC | 1 cut(s) | 979 |
| TspDTI | ATGAA | 8 cut(s) | 17, 741, 765, 1010, 1272, 1347, 1465, 1571 |
| TspRI | CASTG | 2 cut(s) | 292, 1096 |
| XapI | RAATTY | 4 cut(s) | 290, 958, 1259, 1334 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmiI | GTMKAC | 1 cut(s) | 1130 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1518 |
| XspI | CTAG | 3 cut(s) | 203, 693, 1190 |
| ZraI | GACGTC | 1 cut(s) | 539 |
| ZrmI | AGTACT | 2 cut(s) | 341, 1147 |