MD15G1292200.v1.1

Tetratricopeptide repeat

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
27059373 .. 27065463
6091 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1292200.v1.1.491

Sequence Viewer

Length: 1677 bp
ATGAAAAAGTTGCCAATGTTGCTTGGATCTGTAATTTATTGCTGGATTCTATCTTGCAGCAAGGCTATTAAGGATTTGTCAACTGGTTTGAGCATTGAGAGTGCCAATATTGAGTGCTTGTATTTGCGGGCATCCTGCTACCATGCCCTTGGAGAATATGGACATGCGGTCAAGGACTACGACGCTGTGCTCGATTTGGAGCTAGACTCAATGGAGAAGTTTGTGTTGCAATGCCTTGCTTTTTATCAGAAAGAGGTTGCTCTATACACAGCATCAAGAATCAACAGTGAATTTTGCTGGTTTGATATTGATGGAGATATTGATTCACTTTTCAAGGAGTACTGGTGCAAGAGATTGCACCCTAAGAATGTATGCGAAAAGGTCTTTCGACAACCTCCCCTGCGTGAATCTTTGAAGAAGGGCAAGGTTAGAAAGCAAGATTTTTCAGTTACAAAGCAGAAGGCTGCTCTTCTGCAAGCTGCTGATTCAATTGGAAGGAAAATCCAATATGACTGTCCTGGCTTCTTACCGAATCGACGTCAGCATCGTATGGCAGGATTGGCTGCTATTGAGGTTGCACAAAAGGTTTCAAAAGCATGGCGTTCCTTCCAAGCGGAGTGGAAATATTCTAATAATAAAAGCACCTTGAAGTTTGGTAAGAGAGGCCGGAGAAGGGAAAGAGTTAATTTGCCTAGCCAGAATAGAGGCGGTGCTGGTTGCAGTACAAGTAGCTCTTCAGAGACCTCAACTTCATATGGAATTACAGAATCTAATTCATCTGCACGGTCTATGATGTCATGGCATGAGGTTTATTCGATAGCTGTCAAATGGCGGCAGATTTCTGAACCGTGCGACCCTGTTGTGTGGATTAACAAGCTAAGTGAAGAGTTTAATGCTGGATTTGGATCTCATACACCATTGATCCTTGGACAAGCAAAAGTTGTTCGCTACTTCCCAAATTTTAAAAGAACATTAGAAGTCACCAAGGCTATTATGAAGGAAAGATCATATGTGTATAATAAGGTCGATAACCTTATTGATTTATCCAGGGATGGGAAATTGCAAGATATTATGCAAGCAAAATCTTGCACTGATTTATACAGAGTGGTCGGTGAGGACTTCTGGTTGTCTACTTGGTGCGATAGTACTGCCTTTGAGGGGAGGCATCTTGAAGGGACAAGGATTACCCTAGTAAAAATGGGGGAGAACAAATATGACTTTGCAATCAGAACACCTTGTATGCCTTCAAGGTGGGATGAATTTGATGCAGAAATGGCGAAGGCATGGGAAGCTATATGCAATGCTTATTGCGGTGAAAATTATGGATCTAATGAATTCACCGTGCTTGAAAATGTGAGAGATGCGATTTTAAGGATGACGTATTATTGGTACAATTTTATGCCTCTTTCAAGAGGCTCTGCAGCTGTTGGGTTTGTTGTTATGCTCGGATTATTTCTTGCTGCTAATATGGAGTTCATAGGAAATATCCCACAAGGTTTACAGGTAGATTGGGAAGCCATTCTGAACTCTGATCCGGACTCGTTTGTTAATTCGATGAAGACTTGGTTGTATCCTTGTCTGAAGTCAACGACATCCTGGAAAGATCATCCTGATGTGCAATCAACTTTGGCCACAACCGGTTCAGTTGTTGCTGCTCTGAGCACTTACAATGACTGA

Protein Analysis

559

Amino Acids

63.51

Weight (kDa)

8.5

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 1130
AccIII TCCGGA 1 cut(s) 1534
AciI CCGC 6 cut(s) 127, 167, 614, 708, 832, 1311
AclWI GGATC 5 cut(s) 34, 913, 916, 1333, 1526
AcoI YGGCCR 1 cut(s) 1629
AcsI RAATTY 4 cut(s) 290, 958, 1259, 1334
AcuI CTGAAG 2 cut(s) 720, 1601
AcyI GRCGYC 1 cut(s) 538
AfaI GTAC 4 cut(s) 341, 724, 1147, 1391
AfiI CCNNNNNNNGG 3 cut(s) 673, 1053, 1158
AgeI ACCGGT 1 cut(s) 1637
AgsI TTSAA 9 cut(s) 334, 415, 489, 591, 649, 1172, 1248, 1349, 1410
AhdI GACNNNNNGTC 1 cut(s) 167
AjnI CCWGG 3 cut(s) 517, 1046, 1595
AluBI AGCT 7 cut(s) 202, 479, 732, 821, 877, 1292, 1424
AluI AGCT 7 cut(s) 202, 479, 732, 821, 877, 1292, 1424
Alw21I GWGCWC 2 cut(s) 192, 1664
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 5 cut(s) 34, 913, 916, 1333, 1526
Aor13HI TCCGGA 1 cut(s) 1534
AoxI GGCC 2 cut(s) 664, 1629
ApeKI GCWGC 7 cut(s) 57, 464, 479, 563, 1421, 1460, 1652
ApoI RAATTY 4 cut(s) 290, 958, 1259, 1334
AsiGI ACCGGT 1 cut(s) 1637
Asp700I GAANNNNTTC 1 cut(s) 1518
AsuHPI GGTGA 4 cut(s) 973, 1124, 1325, 1330
BalI TGGCCA 1 cut(s) 1631
BbsI GAAGAC 1 cut(s) 1565
Bbv12I GWGCWC 2 cut(s) 192, 1664
BbvI GCAGC 7 cut(s) 69, 451, 466, 550, 1433, 1447, 1639
BccI CCATC 2 cut(s) 305, 1046
BcgI CGANNNNNNTGC 2 cut(s) 1130, 1164
BciT130I CCWGG 3 cut(s) 519, 1048, 1597
BciVI GTATCC 1 cut(s) 1581
BcoDI GTCTC 1 cut(s) 734
BfaI CTAG 3 cut(s) 203, 693, 1190
BfmI CTRYAG 1 cut(s) 1419
BfuI GTATCC 1 cut(s) 1581
BisI GCNGC 8 cut(s) 58, 465, 480, 564, 833, 1422, 1461, 1653
BlsI GCNGC 8 cut(s) 59, 466, 481, 565, 834, 1423, 1462, 1654
BmcAI AGTACT 2 cut(s) 341, 1147
Bme1390I CCNGG 3 cut(s) 519, 1048, 1597
BmeRI GACNNNNNGTC 1 cut(s) 167
BmrFI CCNGG 3 cut(s) 519, 1048, 1597
BmsI GCATC 6 cut(s) 140, 281, 553, 1174, 1255, 1351
BpiI GAAGAC 1 cut(s) 1565
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BsaBI GATNNNNATC 1 cut(s) 904
BsaHI GRCGYC 1 cut(s) 538
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 4 cut(s) 148, 925, 984, 1047
BsaWI WCCGGW 2 cut(s) 1534, 1637
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 673, 1053, 1158
Bse118I RCCGGY 1 cut(s) 1637
Bse1I ACTGG 2 cut(s) 88, 347
Bse3DI GCAATG 2 cut(s) 236, 1306
Bse8I GATNNNNATC 1 cut(s) 904
BseAI TCCGGA 1 cut(s) 1534
BseBI CCWGG 3 cut(s) 519, 1048, 1597
BseDI CCNNGG 4 cut(s) 148, 925, 984, 1047
BseGI GGATG 6 cut(s) 131, 1057, 1261, 1380, 1592, 1606
BseJI GATNNNNATC 1 cut(s) 904
BseLI CCNNNNNNNGG 3 cut(s) 673, 1053, 1158
BseMI GCAATG 2 cut(s) 236, 1306
BseMII CTCAG 1 cut(s) 1649
BseNI ACTGG 2 cut(s) 88, 347
BseXI GCAGC 7 cut(s) 69, 451, 466, 550, 1433, 1447, 1639
BsgI GTGCAG 1 cut(s) 765
BshFI GGCC 2 cut(s) 666, 1631
BshTI ACCGGT 1 cut(s) 1637
BsiHKAI GWGCWC 2 cut(s) 192, 1664
BsiSI CCGG 3 cut(s) 667, 1535, 1638
BslFI GGGAC 1 cut(s) 1189
BslI CCNNNNNNNGG 3 cut(s) 673, 1053, 1158
BsmAI GTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 1189
BsnI GGCC 2 cut(s) 666, 1631
Bso31I GGTCTC 1 cut(s) 734
Bsp1286I GDGCHC 2 cut(s) 192, 1664
Bsp13I TCCGGA 1 cut(s) 1534
Bsp143I GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
BspACI CCGC 6 cut(s) 127, 167, 614, 708, 832, 1311
BspANI GGCC 2 cut(s) 666, 1631
BspCNI CTCAG 1 cut(s) 1650
BspEI TCCGGA 1 cut(s) 1534
BspMAI CTGCAG 1 cut(s) 1423
BspPI GGATC 5 cut(s) 34, 913, 916, 1333, 1526
BspQI GCTCTTC 2 cut(s) 474, 739
BspTNI GGTCTC 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 236, 1306
BsrFI RCCGGY 1 cut(s) 1637
BsrI ACTGG 2 cut(s) 88, 347
BssAI RCCGGY 1 cut(s) 1637
BssECI CCNNGG 4 cut(s) 148, 925, 984, 1047
BssMI GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
BssNI GRCGYC 1 cut(s) 538
BssT1I CCWWGG 3 cut(s) 148, 925, 984
Bst2UI CCWGG 3 cut(s) 519, 1048, 1597
Bst4CI ACNGT 5 cut(s) 287, 515, 786, 849, 1342
Bst6I CTCTTC 3 cut(s) 474, 739, 879
BstACI GRCGYC 1 cut(s) 538
BstC8I GCNNGC 3 cut(s) 129, 477, 1077
BstDEI CTNAG 3 cut(s) 363, 878, 1658
BstF5I GGATG 6 cut(s) 131, 1057, 1261, 1380, 1592, 1606
BstKTI GATC 7 cut(s) 29, 908, 924, 1007, 1328, 1534, 1606
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
BstMWI GCNNNNNNNGC 4 cut(s) 19, 560, 1274, 1289
BstNI CCWGG 3 cut(s) 519, 1048, 1597
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 517, 1046, 1595
BstSFI CTRYAG 1 cut(s) 1419
BstV1I GCAGC 7 cut(s) 69, 451, 466, 550, 1433, 1447, 1639
BstV2I GAAGAC 1 cut(s) 1565
BstX2I RGATCY 3 cut(s) 26, 905, 1325
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 3 cut(s) 26, 905, 1325
BsuI GTATCC 1 cut(s) 1581
BsuRI GGCC 2 cut(s) 666, 1631
BtsCI GGATG 6 cut(s) 131, 1057, 1261, 1380, 1592, 1606
BtsIMutI CAGTG 2 cut(s) 292, 1089
Cac8I GCNNGC 3 cut(s) 129, 477, 1077
Cfr10I RCCGGY 1 cut(s) 1637
CseI GACGC 1 cut(s) 191
Csp6I GTAC 4 cut(s) 340, 723, 1146, 1390
CspAI ACCGGT 1 cut(s) 1637
CspCI CAANNNNNGTGG 2 cut(s) 599, 634
CviAII CATG 6 cut(s) 143, 164, 597, 798, 803, 1284
CviQI GTAC 4 cut(s) 340, 723, 1146, 1390
DdeI CTNAG 3 cut(s) 363, 878, 1658
DpnI GATC 7 cut(s) 28, 907, 923, 1006, 1327, 1533, 1605
DpnII GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
DraI TTTAAA 1 cut(s) 964
DriI GACNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 1629
Eam1104I CTCTTC 3 cut(s) 474, 739, 879
Eam1105I GACNNNNNGTC 1 cut(s) 167
EarI CTCTTC 3 cut(s) 474, 739, 879
Eco130I CCWWGG 3 cut(s) 148, 925, 984
Eco31I GGTCTC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 720, 1601
EcoRI GAATTC 1 cut(s) 1334
EcoRII CCWGG 3 cut(s) 517, 1046, 1595
EcoT14I CCWWGG 3 cut(s) 148, 925, 984
ErhI CCWWGG 3 cut(s) 148, 925, 984
FaeI CATG 6 cut(s) 146, 167, 600, 801, 806, 1287
FalI AAGNNNNNCTT 2 cut(s) 718, 750
FaqI GGGAC 1 cut(s) 1189
FatI CATG 6 cut(s) 142, 163, 596, 797, 802, 1283
FauI CCCGC 1 cut(s) 120
FauNDI CATATG 2 cut(s) 754, 1009
FblI GTMKAC 1 cut(s) 1130
Fnu4HI GCNGC 8 cut(s) 58, 465, 480, 564, 833, 1422, 1461, 1653
FokI GGATG 6 cut(s) 118, 1064, 1268, 1387, 1579, 1593
Fsp4HI GCNGC 8 cut(s) 58, 465, 480, 564, 833, 1422, 1461, 1653
FspBI CTAG 3 cut(s) 203, 693, 1190
GluI GCNGC 8 cut(s) 58, 465, 480, 564, 833, 1422, 1461, 1653
HaeIII GGCC 2 cut(s) 666, 1631
HapII CCGG 3 cut(s) 667, 1535, 1638
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 538
Hin1II CATG 6 cut(s) 146, 167, 600, 801, 806, 1287
HincII GTYRAC 2 cut(s) 81, 1587
HindII GTYRAC 2 cut(s) 81, 1587
HinfI GANTC 9 cut(s) 46, 206, 279, 323, 407, 485, 532, 767, 1538
HpaII CCGG 3 cut(s) 667, 1535, 1638
HphI GGTGA 4 cut(s) 973, 1124, 1325, 1330
Hpy166II GTNNAC 4 cut(s) 81, 1131, 1499, 1587
Hpy188I TCNGA 9 cut(s) 249, 739, 844, 1229, 1448, 1524, 1531, 1581, 1659
Hpy188III TCNNGA 5 cut(s) 276, 1169, 1410, 1535, 1610
Hpy8I GTNNAC 4 cut(s) 81, 1131, 1499, 1587
Hpy99I CGWCG 2 cut(s) 185, 540
HpyAV CCTTC 9 cut(s) 412, 454, 489, 616, 666, 991, 1166, 1254, 1273
HpyCH4III ACNGT 5 cut(s) 287, 515, 786, 849, 1342
HpyCH4IV ACGT 2 cut(s) 538, 1379
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 560, 1274, 1289
HpyF3I CTNAG 3 cut(s) 363, 878, 1658
HpySE526I ACGT 2 cut(s) 538, 1379
Hsp92I GRCGYC 1 cut(s) 538
Hsp92II CATG 6 cut(s) 146, 167, 600, 801, 806, 1287
Kpn2I TCCGGA 1 cut(s) 1534
Kzo9I GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
LguI GCTCTTC 2 cut(s) 474, 739
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 7 cut(s) 69, 451, 466, 550, 1433, 1447, 1639
LweI GCATC 6 cut(s) 140, 281, 553, 1174, 1255, 1351
MaeI CTAG 3 cut(s) 203, 693, 1190
MaeII ACGT 2 cut(s) 538, 1379
MaeIII GTNAC 2 cut(s) 448, 979
MalI GATC 7 cut(s) 28, 907, 923, 1006, 1327, 1533, 1605
MboI GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
MboII GAAGA 5 cut(s) 427, 461, 726, 896, 1570
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 3 cut(s) 26, 905, 1325
MhlI GDGCHC 2 cut(s) 192, 1664
MlsI TGGCCA 1 cut(s) 1631
MluNI TGGCCA 1 cut(s) 1631
MlyI GAGTC 2 cut(s) 200, 1532
Mox20I TGGCCA 1 cut(s) 1631
MroI TCCGGA 1 cut(s) 1534
MroXI GAANNNNTTC 1 cut(s) 1518
MscI TGGCCA 1 cut(s) 1631
MseI TTAA 7 cut(s) 69, 684, 870, 891, 963, 1370, 1548
MslI CAYNNNNRTG 1 cut(s) 1611
Msp20I TGGCCA 1 cut(s) 1631
MspA1I CMGCKG 1 cut(s) 1424
MspI CCGG 3 cut(s) 667, 1535, 1638
MspR9I CCNGG 3 cut(s) 519, 1048, 1597
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 3 cut(s) 519, 1048, 1597
MwoI GCNNNNNNNGC 4 cut(s) 19, 560, 1274, 1289
NdeI CATATG 2 cut(s) 754, 1009
NdeII GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
NlaIII CATG 6 cut(s) 146, 167, 600, 801, 806, 1287
NmuCI GTSAC 1 cut(s) 979
NspI RCATGY 1 cut(s) 167
PciSI GCTCTTC 2 cut(s) 474, 739
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 544
PdmI GAANNNNTTC 1 cut(s) 1518
PfeI GAWTC 7 cut(s) 46, 279, 323, 407, 485, 532, 767
PfoI TCCNGGA 1 cut(s) 1595
PinAI ACCGGT 1 cut(s) 1637
PkrI GCNGC 8 cut(s) 59, 466, 481, 565, 834, 1423, 1462, 1654
PleI GAGTC 2 cut(s) 200, 1532
PpsI GAGTC 2 cut(s) 200, 1532
Psp6I CCWGG 3 cut(s) 517, 1046, 1595
PspGI CCWGG 3 cut(s) 517, 1046, 1595
PstI CTGCAG 1 cut(s) 1423
PsuI RGATCY 3 cut(s) 26, 905, 1325
PvuII CAGCTG 1 cut(s) 1424
RsaI GTAC 4 cut(s) 341, 724, 1147, 1391
RsaNI GTAC 4 cut(s) 340, 723, 1146, 1390
RseI CAYNNNNRTG 1 cut(s) 1611
SapI GCTCTTC 2 cut(s) 474, 739
SaqAI TTAA 7 cut(s) 69, 684, 870, 891, 963, 1370, 1548
SatI GCNGC 8 cut(s) 58, 465, 480, 564, 833, 1422, 1461, 1653
Sau3AI GATC 7 cut(s) 26, 905, 921, 1004, 1325, 1531, 1603
ScaI AGTACT 2 cut(s) 341, 1147
SchI GAGTC 2 cut(s) 200, 1532
ScrFI CCNGG 3 cut(s) 519, 1048, 1597
SduI GDGCHC 2 cut(s) 192, 1664
SfaNI GCATC 6 cut(s) 140, 281, 553, 1174, 1255, 1351
SfcI CTRYAG 1 cut(s) 1419
SmiMI CAYNNNNRTG 1 cut(s) 1611
SsiI CCGC 6 cut(s) 127, 167, 614, 708, 832, 1311
SspI AATATT 2 cut(s) 109, 626
SspMI CTAG 3 cut(s) 203, 693, 1190
StyD4I CCNGG 3 cut(s) 517, 1046, 1595
StyI CCWWGG 3 cut(s) 148, 925, 984
TaaI ACNGT 5 cut(s) 287, 515, 786, 849, 1342
TaiI ACGT 2 cut(s) 541, 1382
TaqI TCGA 6 cut(s) 192, 388, 535, 815, 1026, 1553
TatI WGTACW 3 cut(s) 339, 722, 1145
TauI GCSGC 1 cut(s) 835
TfiI GAWTC 7 cut(s) 46, 279, 323, 407, 485, 532, 767
Tru1I TTAA 7 cut(s) 69, 684, 870, 891, 963, 1370, 1548
Tru9I TTAA 7 cut(s) 69, 684, 870, 891, 963, 1370, 1548
TscAI CASTG 2 cut(s) 292, 1096
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 7 cut(s) 57, 464, 479, 563, 1421, 1460, 1652
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 8 cut(s) 17, 741, 765, 1010, 1272, 1347, 1465, 1571
TspRI CASTG 2 cut(s) 292, 1096
XapI RAATTY 4 cut(s) 290, 958, 1259, 1334
XceI RCATGY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 1130
XmnI GAANNNNTTC 1 cut(s) 1518
XspI CTAG 3 cut(s) 203, 693, 1190
ZraI GACGTC 1 cut(s) 539
ZrmI AGTACT 2 cut(s) 341, 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.