FvH4_1g23050

phagosome-lysosome fusion involved in apoptotic cell clearance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003216
Physical Location & Seq
Reverse (-)
14900468 .. 14920304
19837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23050.t5

Sequence Viewer

Length: 9693 bp
ATGGATTTGGCTGTGGGTGATAAAGGACCTGCAGTACTTCAGTTGCTCAAATGGGGCTCTTCTCAGCCCCAGCTAAACTTGTCGGAATTTCGTGAAGCTTACATTTCACCTACAAGACAGTTATTATTGTTGCTTTCATATCAGTGTGAGGCTTTATTGTTTCCTCTGATTACAGGGGTCTCTACAGGTAGTAACAATTTGGAGAGTAATTTTGGTGAAAGTCTTAAAAGTACAGAGACAGAGCATGGTAGGTCAGATTTAACAAGGGATGATTTGCCGTGCACATCTGGATCAGTAGGAGATGTTGATAATGATTTGAGTTTTGGAGGGGATAGTTTAAGATCTGAAAGTAACCCATTTGTTGGTGATGTTAACTCTCTGGCTTGGGGCATTTGTGAGGACACTTATAATCAGCACCAGGATTCTTTATTTAGAGAACTTTTGTTTGTTTGTGGCAAGCAAGGTATTATGGTCCATGCTTTTGTTGAATCCACCGGAAACACTACAATTACCAGCGATGCACGGGAAGGTAGGTATAGGCAAGGGAGGTGGGTTGAGTGGGGGCCTTCTGCTTCTGTAGTTGGAAATATGGAGTTGGAGGAACCTACAAGCTTGAGTTCTGAAGCCACTGGAAATAGTGAGTTTAACAAAGCCAATGGAAAAAGTGAAAGTCCCCATGCTTGTAATGTGGATGGGAATGATGAGGTGTCCAAAAGTGTTGCTTCTAAGAGATGGTTGCAATCTTTTTTGACTAAAGTTGAAAATGTTGAAGATAATGGTAAGATATTGACCAGATTTCCGGAAAAGTCATCGTTACCTAGCTCTGCAAGAATTGTTTCATTTAGTTTATTTGATAGTAGTTCGCCAATTTTGGAGTACCTTTCAAAAAATGATTCTGCATCAGATAAGGCATGTGGTCAGGAAAGACTTTATGAGTCGGAGAATGATAAATCTCTAAATTTAGACATAACTTCATCTGATCCACATTTCAAGTCTGAAACTCTGTCCAATCTTTTTGGTGTTGGAATGGATAGTGTATACAAATGCTGCAGAGTGTTCTCAAGCAATTCACATTACTTCATTGGATTTGTTTTCACACAGGTTGATCCGGTAATTGTCAATACTAGTGATGATAGTGGAAAAAGCAAGAAGAATAATGTACTGCTTATTTCTAGATTAGACGACGCGGGAATTCATTGGGTTTCCACAGTGAAGCCTGATGAAAGTCCACATATCGGCTCAGTAGGACAATGGACAGACTTCCACTTTTCCGATAAACTTCTTGTTTGTCTTAATGCTTGTGGGCTAATTGTATTTTATGCAGCAATGTCAGGTGAGTATGTTGCACATATAGATATTTTAGAGACTTTAGGAATCAACACTGGGTTGCATTTGCAGAAGCAGGAAGCAGTTTCCACAGATTATGATGAGCATATTAGTCAAGTTGATGACATTCGGAACAAATCAGTTTTGCAACATATAGATTATTCTGGCAGTAGAGTTTTTAAAAAGTTGATTGCTGCTTCACATACCACCCTAGTAGCTGCTATAGATGATTATGGTGTAATATATGTAATTTCTGCTGGTGAATATCTACCGGACAAATATAATACAAATGCGAAACTACTTCCACATATTCAGCATTTGGAACTTGGAATATTGGCTGGTTGGGAAGTTGGCGGTTCTCATATAGGCCACCAAAGAGAATATTCTGACATACCTGATTCGTGGAATTCCATCATTCCATCCATGATGAAAGGAAGATCCTTCCTGGATGATTTTGGGGAACAAGTGCTTCAGAGAAACAAAGAGTTATACCTCAAACAAGAAGGGACTGGATACAGGTCAGAAGTAACTGATCAGAAGTTTGATGAGTCTCACAGAAAGGGACACCTTATGCGCAAGATCTTTGTTCCCAGTTATAGATTTAGTGAGGATGATATCATCTGTTTTTCTCCATTGGGAATTACTCAGCTTATGAGACACCAAAATTCACGTGATCAGAGGGGTTCTCAAATGGTTCATATCAATATGCATGCAGAATCAGCAGTATGTGATGACAGCTTTTTGAATACCGGTTGTAAAAAGTTTTATCTCCATGAGAAAGAAGAATACTTCATCGGTGAGGCAGTGGGTTGCACATTCCAGGGATGCATTTATTTGGTTACGATAAGTGGACTTTCGGTGGTGCTTCCCTCTATTGCAGTTTCATCAAATTTTCTTCCTGTAGAAGTTATTGGATGTCGACAGTTGTGTCTCAATTCAGGCATTGGGTATCAAGGGAAGGCTATAAGGGGAGATAAAGAATCTAAACAGCCGTGGTCACCTTGGAATGTTGAAATTCTGGATAGAGTTCTCCTATATGAAGGTGCTGAAGAAGCCGATCGCTTATGCTTGGAGAACGGTTGGGACCTGAAAATATCTCGGATGCGTCGGCTGCAGTTGTCACTGGATTACTTGAAATTTGATGAGATAGAGCGATCATTAGAAAAGCTTGTGGGTGTCAATTTGGCAGAAGAGGGTGTGCTTAGATTGCTCTTTGCGGCTGTTTATCTGATGCTTCGTAAAGTTGGCAATGATAATGAGGTTTCTGCTGCATCAAGGCTTCTTGCAGTGGCCACTTCTTTTGCGACGAAAATGATTCGCAAGTATTGGTTGCTAGAACATAGGAAAAGGAAAGATGCATACGAATCTGGTAGGACCCAACTTCTATCTCTTCCACCAGTTTCACCGGTGAAGATAGAAGATGAAATGGCAAATTCAAGGAGGCTTCGTGAGATGGCTCACTTTTTGGAGATAATTCGAAATCTCCAATCTCGACTTGGTTCAAAGTATAAGAGGCCAGGCCAAGAACTGGTGGATAGTGGGGAAGCATCAAGATTGGTTGAGACTGATTTATTGCAGAATGAATCGCAGTTATCAATTGTATCTGTGGACGCTATATCTTTGGAGACATCCAAACAGCATGAAGTTTCTTTCCCTGTATCGACATCAGGCCTTAACTATAATGAGAATCTTGCTTTAACACCTGTGGATTCTAAAGTCCCTTTGGACCCAGAGGATTTGAGTGAAGTGTCTGCTCTTGTGCCACGAGGAGGGCTCTTAGAGAAGAAAATTTTTCCCTTAGAGAATCCCAAGGAGATGATTGCTCGTTGGAAGATAGATAATCTAGACCTTAGGGCAGTAGTCAGTGATGCTTTACTCTCTGGTCGTCTGCCCTTAGCAGTTCTTCAACTACATCTTCATCGTTCAAGAGATTCATTTTCTGGAAAGGAGCCTCATGATACTTTCACTGAAGTCCGTGATGTTGGTAGAGCTATTGCTTATGATCTGTTTTTGAAGGGTGAGTCTGGACTTGCTGTGGCCACATTGCAAAGGCTTGGAGAGGATGTAGAAACCAGCCTTAAGCAGTTATTATTCGGCACTGTGAGAAGATCTCTTCGTGTGAAAATCACTGAGGAGATGAATAAATATGGTTACCTGGGATCGTATGAGTGGAAGATATTGGATAGGATATCACTCATTGAGAGGCTATACCCCAGCAGTAGTTTCTGGAAAACGCTTCATGGACGGCAGAAAGAATTCACTCAAATTCCAGCAAGTTCCAGTTTGCCCAAGAGATATTATTTGCGCCTATTGGATTCAGCTCTAGTCAACAATTTTACCATCGAGTGTGATGAAATTGATGGAGTTGTTTTTGGTTCATGGACAAATGTAAATGAAAATCCTTCTGGTCCTATGGTTGATGAAGATAATGCTTACGCTGGTTACTGGGCTGCTGCTGCTGTATGGTTTAGTTTCTATGATCAAAGAAGCGTTGATCGAATCGTCTTGGACCAGTCATCTTTCATGGGCGTGAATGTATTGTGGGAATCACAGCTTGAGTACCATGTATGCCACAATGACTGGGAGGAAGTTTCTAGACTCCTGGACCTTATTCCTGCACATGTTCTTGTCGTTGGAAGCCTCCAAATCAATTTGGATGGGCTACAGCCTGCTTCAACTTTTGAATGCAATAGAGGTTCTGACTACAGTGATTACCTCTGCTATGTTGAAGAACTGGATGCTGTTTGCATGGATGTACCAGAGATCAAAGTTTTCAGGTTTTCGTGTGATGGTATGTGCTCCATATGGTTAAAGATGCTGATGGAAGAAAAACTTGCAAGGAAACTAATTTTCTCAAAGGAATATTGGGAAGGCACAGCAGATATACTTCCTCTTCTTGCTCGTTCTGGCTTCATTACTAGCAAGTATGAGATCACTTCAGAGGATGATAATATTGAGGATAAATCAGTCCTGAAATTTCCGGATGGTGGTACCATACAGGCTTTACATAAACTACTTATTCATCATTGCTCACAGTACAACTTGCCAAACCTTCTGGACCTTTACCTTGACCAGCACGAGTTGGTAACAGATAGTAATTCAGTTCGTTCACTTCTGGAAGCCGCAGGAGATTGTGAATGGGCACGATGGTTGCTCCTCTCTAGAGTTAAAGGGTGTGAGTATGAAGCATCATTTTCCAATTCTCGCGCGATGCTTTCACACAATCTAGTTCCGGATAGTAACCTCCATGTTCAGGAGATGGATGAAATAATTCGTACTGTTGATGACATTGCAGAAGGAGGGGGAGAATTGGCAGCTTTGGCAACCTTAATGTATGCCTCTGCCCCCTTTCAAAGTTGTCTAAGTAGTGGTAGTGTAAAGAGGCATAGTAGTACATCAGCCCAGTGCACACTGGAGAATCTCAGGCCCACGCTTCAGCGTTTCCCTACACTATGGCACACATTTGTATCAGCATGTTTCGGGCAAGATACAACTTCCAATCTTGTGGGGCCTAAAGCAAAGAATGGTTTATCAGATTATTTAAGTTGGCGTGATGACATATTCTTCTCTTCTGGACGTGATACTTCACTTCTGCAAATGCTTCCATGCTGGTTTCCGAAGGCTGTGCGGAGGTTGATTCAGCTTTATGCTCAGGGTCCTCTTGGATGGCAATCAATACCAGGTCTGCCTGTGGGAGAAAGTCTGCTGCACAGAGATATAGATTTTGTTCTAAACACTGATGACGATGTAGAAATCAGTGCCCTATCCTGGGAAGCAACTATCCAAAAACACATTGAGGAGGAACTCTATAGTTCTGCACTTGAGGGAAATGCGCTTGGGCTTGAACACCATTTACACCGTGGACGTGCTTTAGCTGCTTTTAATCATTTTCTTGGTTTGAGAGTTCAAAAATTGAAATCAGAAGGAAAAGGACAAATACAAGCAAATGTTCAAGCAGATGTTCAGACACTTCTTGAACCTATAACAGAAAGTGAAGAGTCTCTTCTTTCATCAGTCATGCCACTTGCAATTATGCATTTTGAGGATTCTGTGCTGGTTGCTTCGTGCGCTTTTCTCCTGGAGCTTTTTGGGTATTCTGCCAGCATGCTCCGAATAGACATTGCTGCTCTGAAACGGATGTCTTATTTTTACAAATCAAGTGAAAATACTGACAACTTAAGGAAAATTTTGACAAAAGGGTCTGCATTTCATGCAGTTGGCCATGAAAGTGATATAATGGAGTCTCTCGCTCGAGCTCTAGCCGATGAGTATCTGCAGCAGGATAGTGCCAGAATGACTAAGCAAAAGGGTACTCCAAGTTTAGCTGTGGTTAAGCAACCTTCACGAGCTCTTATGCTTTTCTTAGAATTCTTGGAAAAGGCTAGCCTTCCTTCAATGGTGGATGGGAGAACATGTGGGTCTTGGCTGTTGAGTGGTGATGGTGATGGAATCGAGTTGAGATCTCAACAGAAAGCTGCAAGCCATCGCTGGAACTTAGTTACAATTTTCTGCCAGATGCACCACCTTCCCTTGAGCACTAGATATCTTTCTGTACTGGCAAGAGACAATGATTGGGTTGGGTTTTTGTCAGAAGCTCAGATTGGAGGATATCCTTTCGACACAGTGGTCCAAGTGGCATCAAAGGACTTTTGTGATCCACGTCTTAAAATTCATATTTCGACAGTTCTGAAAGCCATGCAGTCAAGAAGAAAAGCTAGCTCTTCAACAACAGAAACTATAGAGAAAAGGAGTGAAGCTTCCTTTACTGATGAAAGCATTTGTGTCCCAGTTGAACTTTTTAGAATATTAGCAGAATGTGAAAAGCAGAAAAACCCTGGAGAGGCCATTTTGATGAAAGCAAAGGAGTTATCTTGGTCAATTTTGGCTATGATTGCATCCTGCTTTTCAGACGTGTCTGCAATATCTTGCCTAACAGTCTGGCTGGAAATCACTGCTGCAAGGGAAACTTCATCTATCAAGGTGAATGATATTGCTTCCAGAATTGCAAATAATGTTGGAGCAGCTGTGGAAGCTACTAATGCTCTGCAAGCAGGAGGGAGTAAATCCCTTACATTTCATTACAGTAGGCAGAATGCAAAAAGGAGGCGGCTCCTGGAGCCCAACTTAGGAGAACCCTCAGCCACTACAATGTCTGGAATTCTGGGTTCACCTGTGGGTGTGAAAATATTTGACCAGGGAACTATTTCTGAAGACGAAAGAAATATAGAACTTGGCGGAAATATGATTCTCTCAACTGATTCTGATGAAGCGTCTGTTTCACTGTCGAAGATGGTTTCAGTGCTTTGTGAGCAGCACCTGTTCCTGCCTTTGTTAAGAGCATTTGAAATGTTCCTTCCTTCATGTTCTCTTGTACCTTTCATACGTGCACTTCAGGCATTTTCACAAATGCGCCTTTCTGAAGCATCAGCACACTTAGGTTCATTTTCTGCCCGAATCAAAGAAGATTCAACTCGCTTACAGACAAATGTAGGAAGAGATATGCACATTGGTGCATCATGGATAAGCTCTACGGCTATTAAAGCTGCGGATGCCATGCTTTTGACTTGTCCATCTCCTTATGAAAAGAGATGCTTACTAAAACTTCTTGCTGCCACTGATTTTGGCGATGGAGGTCCTGCAGCTACTTATTATCGGCGGCTTCATTGGAAAATTAATCTAGCGGAGCCACTATTACGCAAGGATGATATTTTGCAACTGGGGGATGAAACTCTAGATGATGGTGCACTTGCAACAGCATTGGAAAGTAATAGGCACTGGGAGCAAGCACGCAACTGGGCCAGACAGTTGGAGGCCAGTGCTGGAGTTTGGAAATCTGCTGTTCATCATGTAACTGAAACTCAGGCTGAATCTATGGTAGCTGAGTGGAAGGAATTTCTTTGGGATGTCCCTGAGGAGAGAATCGCCTTATGGGGACATTGCCAAACGCTGTTTATCAGATATTCCTTCCCTGCTTTACAGGCTGGGCTATTTTTCCTTAAGTATGCAGAAGCTCTGGAAAAAGATCTTCCAGCTAGGGAGCTTCATGAGCTGTTGCTGCTTTCACTACAATGGTTAAGCGGAATGATTACTCAGTCCAATCCAGTTTATCCACTTCATCTGATTCGGGAAATCGAGACTAGAGTATGGCTCTTGGCGGTAGAATCAGAGGCACAGGGTAAGAGTGAAGGAGACTTCAATCTAAGCAGTTCCATCCGTGATCCTATTCACAAAAATAGCTCCAGTATTATTGACAGAACAGCAAGTATCATAACAAAAATGGACAATCACATCGGTACATTTAAGAATAGAACTGTAGAGAAACATGATGCAAGGGAAAATAACCAGGCATATCACAGGAACCAAGTATCAGATGTTAGCTTTCCAACCACCACTGCAGGGAGTACAAAGACTAAGCGAAGGGCAAAAGGCTATGTGCCATTACGACGGCCAGTAGTGGACTCACCAGAAAAAAGCGCTGATCCTGATGAGGGTTCTAATTCTCTTAATGTTAGACATGAATTGCAGTCTCAGGATGAAAACTTAAAATCAGACATGTCCTTTTCACGGTGGGAGGAAAGGGTTGGACCTGCAGAGCTGGAAAGGGCTGTTCTTTCTTTATTAGAATTTGGACAAATAGCTGCTGCAAAGCAACTCCAGCATAAGCTGTCTCCAGTAAAAGTACCATCTGAAATTTTACTTGTGGATTCCGCACTGAAGCTTGCTGCTATGTCAACTCCAAGTAAAACAGTATCTTTAGCAATGCTTGATGAAGAAGTACGTTCGGTTATTCAGTCCCACCATATTCCGACCCAGCAACATGAAGTTGATACACTGCAGGTTTTGGAGAATCTAGCAACCATTTTTACTGAAGGTTGCGGACGTGGACTATGCAAGAGGATAATAGCAGTAAACAAAGCAGCATGTATGTTAGGTCTTCCATTTCCGGAGGCATTTGCCAAGCAGCCAATTGAATTACTACAGCTGCTTTCCCTTAAAGCACAAGAATCATTTGAGGAGGCACATCTCCTTGTCAGTACTCATTCAATGCCCGCAGCCAGTATTGCTCAGATTCTTTCAGAATCCTTTCTAAAGGGCTTATTGGCAGCTCATCGTGGGGGATATATGGATTCTCAAAAAGAAGAAGGACCTGCTCCCTTACTCTGGAGATTTTCAGACTTCTTAAAGTGGGCAGAGCTTTGTCCTTCTGAACAAGAAATTGGGCATGCACTAATGCGCTTGGTTATTACTGGACAAGAAGTACCACATGCTTGTGAGGTTGAGCTTCTAATTTTGTCCCACCACTTCTACAAACTATCATCTTGCCTTGATGGAGTTGATGTTCTTGTAGCCCTTGCAGCTACTAGAGTAGAAGCTTATGTGTCTGAGGGTGATTTTTCATGTTTGGCCCGTCTGATAACTGGAGTAGGAAACTTCCACGCCCTGAATTTCATTCTTGGAATTCTTATTGAAAATGGCCAACTGGATCTCCTTCTTCAGAAGTATTCAGCTGCCGCAGACACGAATGCTGGCACTGCTGAGGCTGTCCGGGGATTTCGGATGGCTGTTCTGACATCATTGAAGCATTTTAATCCCAATGACCTTGATGCTTTTGCTATGGTCTACAATCACTTTGACATGAAACATGAAACGGCTGCTCTTTTGGAGTCACGAGCAGAGCAGTCATCAGAGCAGTGGTTCATTCGTTATGACAAGGATCAGAATGAGGACCTTCTAGACTCCATGCGTTATTACATTGAAGCTGCTGAAGTTCACAAATCCATTGATGCTGGCAACAAAACACGCAGAGCATGTGCTCAGGCCTCCCTCTTGTCTCTTCAGATTCGGATGCCAGATTTCCACTGGCTGTACCGATCCGAAACCAATGCCAGGCGTGCCCTAGTGGAGCAGTCTCGTTTCCAAGAGGCCCTCATTGTTGCTGAAGCCTATGGTCTTAACCAGCCAAGTGAGTGGGCCTTGGTACTTTGGAACCAGATGCTCAAACCAGAAGTTCTGGAAGACTTTGTGGCTGAATTTGTGGCTGTTCTTCCTCTCCAGCCCTCGATGCTCGTTGACCTAGCAAAGTTCTATAGGGCTGAGGTGGCAGCGAGAGGGGACCAATCCCAGTTTTCAGTTTGGTTAACTGGGGGAGGGTTGCCAGCGGAATGGGCAAAATATCTGGGGAGGTCGTTTAGATGCTTGTTGAAAAGGACTAGAGATTTGAAGTTGCGGTTGCAGTTGGCTACTGTGGCAACTGGTTTTGGAGATGTCATTGATGCATGTACAAAGGCGTTAGATAGGGTCCCTGAGAATGTTGGACCTCTTGTCCTGCGGAAAGGCCACGGTGGTGCTTATCTACCACTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spatacsin_C

Protein Analysis

3231

Amino Acids

360.59

Weight (kDa)

5.45

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spatacsin_C PF14649 2001 - 2292 3.1e-73 Spatacsin C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AasI GACNNNNNNGTC 3 cut(s) 2253, 5524, 5951
Acc16I TGCGCA 1 cut(s) 1901
Acc36I ACCTGC 4 cut(s) 37, 7921, 8152, 8482
Acc65I GGTACC 1 cut(s) 4316
AccB1I GGYRCC 1 cut(s) 4316
AccB7I CCANNNNNTGG 2 cut(s) 362, 2854
AccI GTMKAC 3 cut(s) 1038, 2245, 8946
AccII CGCG 3 cut(s) 1187, 4533, 4535
AccIII TCCGGA 4 cut(s) 799, 4306, 4558, 8269
AcoI YGGCCR 5 cut(s) 2616, 3363, 5545, 7772, 8800
AcvI CACGTG 1 cut(s) 1997
AfeI AGCGCT 1 cut(s) 7801
AflII CTTAAG 3 cut(s) 3404, 5503, 7322
AflIII ACRYGT 4 cut(s) 3946, 5738, 6237, 7878
AgeI ACCGGT 2 cut(s) 2075, 2731
AhdI GACNNNNNGTC 1 cut(s) 9647
AhlI ACTAGT 1 cut(s) 1124
AjiI CACGTC 5 cut(s) 4904, 5192, 5987, 6238, 8207
AjuI GAANNNNNNNTTGG 4 cut(s) 5910, 5942, 8526, 8558
AleI CACNNNNGTG 3 cut(s) 6834, 9669, 9688
AloI GAACNNNNNNTCC 2 cut(s) 8649, 8681
Alw21I GWGCWC 9 cut(s) 284, 4127, 4736, 5584, 5677, 5864, 6715, 7072, 9142
Alw44I GTGCAC 4 cut(s) 280, 4732, 6711, 7068
AlwNI CAGNNNCTG 1 cut(s) 6643
Ama87I CYCGRG 1 cut(s) 5577
Aor13HI TCCGGA 4 cut(s) 799, 4306, 4558, 8269
Aor51HI AGCGCT 1 cut(s) 7801
ApaLI GTGCAC 4 cut(s) 280, 4732, 6711, 7068
ArsI GACNNNNNNTTYG 2 cut(s) 9526, 9558
AseI ATTAAT 1 cut(s) 6999
AsiGI ACCGGT 2 cut(s) 2075, 2731
Asp700I GAANNNNTTC 5 cut(s) 835, 3581, 4596, 6529, 8409
Asp718I GGTACC 1 cut(s) 4316
AspLEI GCGC 8 cut(s) 1902, 3633, 4535, 5161, 5396, 6738, 7802, 8562
AsuC2I CCSGG 1 cut(s) 8873
AsuII TTCGAA 1 cut(s) 2803
AsuNHI GCTAGC 2 cut(s) 5708, 6041
AvaI CYCGRG 1 cut(s) 5577
AxyI CCTNAGG 2 cut(s) 3176, 7236
BaeGI GKGCMC 7 cut(s) 284, 4471, 4736, 5089, 6715, 7072, 9223
BaeI ACNNNNGTAYC 2 cut(s) 4776, 4809
BalI TGGCCA 4 cut(s) 2618, 3365, 5547, 8802
BanI GGYRCC 1 cut(s) 4316
BanII GRGCYC 5 cut(s) 59, 3102, 5584, 5677, 6447
BauI CACGAG 4 cut(s) 3090, 4403, 5670, 8994
BbrPI CACGTG 1 cut(s) 1997
BbsI GAAGAC 3 cut(s) 6543, 8252, 9348
Bbv12I GWGCWC 9 cut(s) 284, 4127, 4736, 5584, 5677, 5864, 6715, 7072, 9142
BbvCI CCTCAGC 3 cut(s) 6463, 8862, 9420
BceAI ACGGC 6 cut(s) 262, 2302, 3587, 6873, 7787, 8991
BcgI CGANNNNNNTGC 4 cut(s) 4933, 4967, 9191, 9225
BciVI GTATCC 1 cut(s) 1832
BclI TGATCA 3 cut(s) 1858, 1999, 3805
BcnI CCSGG 1 cut(s) 8873
BcuI ACTAGT 1 cut(s) 1124
BfoI RGCGCY 1 cut(s) 7803
BfrI CTTAAG 3 cut(s) 3404, 5503, 7322
BfuAI ACCTGC 4 cut(s) 37, 7921, 8152, 8482
BfuI GTATCC 1 cut(s) 1832
BglII AGATCT 5 cut(s) 341, 1905, 3434, 5786, 7348
BmcAI AGTACT 2 cut(s) 36, 8362
BmeRI GACNNNNNGTC 1 cut(s) 9647
BmeT110I CYCGRG 1 cut(s) 5577
BmgBI CACGTC 5 cut(s) 4904, 5192, 5987, 6238, 8207
BmtI GCTAGC 2 cut(s) 5712, 6045
BpiI GAAGAC 3 cut(s) 6543, 8252, 9348
BplI GAGNNNNNCTC 8 cut(s) 1996, 2028, 3084, 3116, 3421, 3453, 7458, 7490
Bpu10I CCTNAGC 6 cut(s) 3220, 4977, 6463, 8862, 9141, 9420
Bpu14I TTCGAA 1 cut(s) 2803
BpuEI CTTGAG 5 cut(s) 634, 1045, 3902, 5168, 5878
BpuMI CCSGG 1 cut(s) 8873
BsaAI YACGTR 2 cut(s) 1997, 6710
BsaBI GATNNNNATC 2 cut(s) 4996, 5595
BsaI GGTCTC 1 cut(s) 184
BsaWI WCCGGW 9 cut(s) 494, 799, 1108, 1597, 2075, 2731, 4306, 4558, 8269
Bse118I RCCGGY 2 cut(s) 2075, 2731
Bse21I CCTNAGG 2 cut(s) 3176, 7236
Bse3DI GCAATG 8 cut(s) 1332, 2581, 3368, 4351, 4614, 5445, 7261, 8091
Bse8I GATNNNNATC 2 cut(s) 4996, 5595
BseAI TCCGGA 4 cut(s) 799, 4306, 4558, 8269
BseJI GATNNNNATC 2 cut(s) 4996, 5595
BseMI GCAATG 8 cut(s) 1332, 2581, 3368, 4351, 4614, 5445, 7261, 8091
BseRI GAGGAG 6 cut(s) 3108, 3473, 4472, 5138, 7253, 8354
BseSI GKGCMC 7 cut(s) 284, 4471, 4736, 5089, 6715, 7072, 9223
BseYI CCCAGC 4 cut(s) 69, 3539, 7307, 8136
BsgI GTGCAG 3 cut(s) 3927, 5018, 5127
Bsh1236I CGCG 3 cut(s) 1187, 4533, 4535
Bsh1285I CGRYCG 1 cut(s) 2386
BshNI GGYRCC 1 cut(s) 4316
BshTI ACCGGT 2 cut(s) 2075, 2731
BsiEI CGRYCG 1 cut(s) 2386
BsiHKAI GWGCWC 9 cut(s) 284, 4127, 4736, 5584, 5677, 5864, 6715, 7072, 9142
BsiHKCI CYCGRG 1 cut(s) 5577
BsmI GAATGC 3 cut(s) 4016, 6424, 8854
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 5577
Bsp119I TTCGAA 1 cut(s) 2803
Bsp13I TCCGGA 4 cut(s) 799, 4306, 4558, 8269
Bsp1407I TGTACA 1 cut(s) 9605
BspEI TCCGGA 4 cut(s) 799, 4306, 4558, 8269
BspFNI CGCG 3 cut(s) 1187, 4533, 4535
BspHI TCATGA 2 cut(s) 3280, 7369
BspMAI CTGCAG 8 cut(s) 34, 1052, 2442, 5604, 6967, 7723, 7918, 8163
BspMI ACCTGC 4 cut(s) 37, 7921, 8152, 8482
BspOI GCTAGC 2 cut(s) 5712, 6045
BspQI GCTCTTC 2 cut(s) 64, 6052
BspT104I TTCGAA 1 cut(s) 2803
BspT107I GGYRCC 1 cut(s) 4316
BspTI CTTAAG 3 cut(s) 3404, 5503, 7322
BspTNI GGTCTC 1 cut(s) 184
BsrDI GCAATG 8 cut(s) 1332, 2581, 3368, 4351, 4614, 5445, 7261, 8091
BsrFI RCCGGY 2 cut(s) 2075, 2731
BsrGI TGTACA 1 cut(s) 9605
BssAI RCCGGY 2 cut(s) 2075, 2731
BssNAI GTATAC 1 cut(s) 1039
BssSI CACGAG 4 cut(s) 3090, 4403, 5670, 8994
BssT1I CCWWGG 3 cut(s) 2327, 3135, 9300
Bst1107I GTATAC 1 cut(s) 1039
Bst2BI CACGAG 4 cut(s) 3090, 4403, 5670, 8994
BstAFI CTTAAG 3 cut(s) 3404, 5503, 7322
BstAPI GCANNNNNTGC 1 cut(s) 5537
BstAUI TGTACA 1 cut(s) 9605
BstBAI YACGTR 2 cut(s) 1997, 6710
BstBI TTCGAA 1 cut(s) 2803
BstDSI CCRYGG 3 cut(s) 2318, 5185, 9664
BstEII GGTNACC 2 cut(s) 2322, 3476
BstFNI CGCG 3 cut(s) 1187, 4533, 4535
BstH2I RGCGCY 1 cut(s) 7803
BstHHI GCGC 8 cut(s) 1902, 3633, 4535, 5161, 5396, 6738, 7802, 8562
BstMCI CGRYCG 1 cut(s) 2386
BstPI GGTNACC 2 cut(s) 2322, 3476
BstSLI GKGCMC 7 cut(s) 284, 4471, 4736, 5089, 6715, 7072, 9223
BstUI CGCG 3 cut(s) 1187, 4533, 4535
BstV2I GAAGAC 3 cut(s) 6543, 8252, 9348
BstX2I RGATCY 7 cut(s) 341, 1763, 1905, 3434, 5786, 7348, 8809
BstXI CCANNNNNNTGG 4 cut(s) 4831, 7132, 9294, 9489
BstYI RGATCY 7 cut(s) 341, 1763, 1905, 3434, 5786, 7348, 8809
BstZ17I GTATAC 1 cut(s) 1039
Bsu36I CCTNAGG 2 cut(s) 3176, 7236
BsuI GTATCC 1 cut(s) 1832
BtgI CCRYGG 3 cut(s) 2318, 5185, 9664
BtgZI GCGATG 4 cut(s) 531, 4550, 5795, 6966
BtrI CACGTC 5 cut(s) 4904, 5192, 5987, 6238, 8207
BtsI GCAGTG 7 cut(s) 2136, 2619, 6276, 7716, 8156, 8856, 9023
BveI ACCTGC 4 cut(s) 37, 7921, 8152, 8482
CaiI CAGNNNCTG 1 cut(s) 6643
CciI TCATGA 2 cut(s) 3280, 7369
CfoI GCGC 8 cut(s) 1902, 3633, 4535, 5161, 5396, 6738, 7802, 8562
Cfr10I RCCGGY 2 cut(s) 2075, 2731
CseI GACGC 4 cut(s) 1193, 2420, 2945, 6585
CsiI ACCWGGT 1 cut(s) 5005
CspAI ACCGGT 2 cut(s) 2075, 2731
CspCI CAANNNNNGTGG 6 cut(s) 530, 565, 2608, 2643, 6928, 6963
DraI TTTAAA 1 cut(s) 1507
DrdI GACNNNNNNGTC 3 cut(s) 2253, 5524, 5951
DriI GACNNNNNGTC 1 cut(s) 9647
DseDI GACNNNNNNGTC 3 cut(s) 2253, 5524, 5951
EaeI YGGCCR 5 cut(s) 2616, 3363, 5545, 7772, 8800
Eam1105I GACNNNNNGTC 1 cut(s) 9647
EciI GGCGGA 1 cut(s) 6576
Ecl136II GAGCTC 2 cut(s) 5582, 5675
Eco130I CCWWGG 3 cut(s) 2327, 3135, 9300
Eco147I AGGCCT 2 cut(s) 2997, 9146
Eco24I GRGCYC 5 cut(s) 59, 3102, 5584, 5677, 6447
Eco31I GGTCTC 1 cut(s) 184
Eco32I GATATC 4 cut(s) 1942, 3516, 5870, 5936
Eco47III AGCGCT 1 cut(s) 7801
Eco53kI GAGCTC 2 cut(s) 5582, 5675
Eco72I CACGTG 1 cut(s) 1997
Eco81I CCTNAGG 2 cut(s) 3176, 7236
Eco88I CYCGRG 1 cut(s) 5577
Eco91I GGTNACC 2 cut(s) 2322, 3476
EcoICRI GAGCTC 2 cut(s) 5582, 5675
EcoO65I GGTNACC 2 cut(s) 2322, 3476
EcoRI GAATTC 6 cut(s) 1191, 1732, 3581, 5693, 6483, 8784
EcoRV GATATC 4 cut(s) 1942, 3516, 5870, 5936
EcoT14I CCWWGG 3 cut(s) 2327, 3135, 9300
EcoT22I ATGCAT 5 cut(s) 2037, 2156, 2686, 5364, 9604
EcoT38I GRGCYC 5 cut(s) 59, 3102, 5584, 5677, 6447
ErhI CCWWGG 3 cut(s) 2327, 3135, 9300
FauI CCCGC 2 cut(s) 1180, 8383
FauNDI CATATG 1 cut(s) 4130
FbaI TGATCA 3 cut(s) 1858, 1999, 3805
FblI GTMKAC 3 cut(s) 1038, 2245, 8946
FriOI GRGCYC 5 cut(s) 59, 3102, 5584, 5677, 6447
FspI TGCGCA 1 cut(s) 1901
GlaI GCGC 8 cut(s) 1901, 3632, 4534, 5160, 5395, 6737, 7801, 8561
GsaI CCCAGC 4 cut(s) 73, 3543, 7311, 8140
HaeII RGCGCY 1 cut(s) 7803
HgaI GACGC 4 cut(s) 1193, 2420, 2945, 6585
HhaI GCGC 8 cut(s) 1902, 3633, 4535, 5161, 5396, 6738, 7802, 8562
Hin6I GCGC 8 cut(s) 1900, 3631, 4533, 5159, 5394, 6736, 7800, 8560
HinP1I GCGC 8 cut(s) 1900, 3631, 4533, 5159, 5394, 6736, 7800, 8560
HincII GTYRAC 6 cut(s) 373, 2246, 3655, 8058, 9397, 9465
HindII GTYRAC 6 cut(s) 373, 2246, 3655, 8058, 9397, 9465
HindIII AAGCTT 6 cut(s) 96, 610, 2492, 6081, 8042, 8697
HpaI GTTAAC 2 cut(s) 373, 9465
Hpy99I CGWCG 4 cut(s) 1187, 2436, 2635, 7773
HpyCH4IV ACGT 8 cut(s) 1996, 4903, 5191, 5986, 6237, 6709, 8104, 8206
HpySE526I ACGT 8 cut(s) 1996, 4903, 5191, 5986, 6237, 6709, 8104, 8206
HspAI GCGC 8 cut(s) 1900, 3631, 4533, 5159, 5394, 6736, 7800, 8560
KflI GGGWCCC 1 cut(s) 9625
Kpn2I TCCGGA 4 cut(s) 799, 4306, 4558, 8269
KpnI GGTACC 1 cut(s) 4320
Ksp22I TGATCA 3 cut(s) 1858, 1999, 3805
KspAI GTTAAC 2 cut(s) 373, 9465
LguI GCTCTTC 2 cut(s) 64, 6052
MabI ACCWGGT 1 cut(s) 5005
MaeII ACGT 8 cut(s) 1996, 4903, 5191, 5986, 6237, 6709, 8104, 8206
MfeI CAATTG 2 cut(s) 2922, 8292
MflI RGATCY 7 cut(s) 341, 1763, 1905, 3434, 5786, 7348, 8809
MlsI TGGCCA 4 cut(s) 2618, 3365, 5547, 8802
MluNI TGGCCA 4 cut(s) 2618, 3365, 5547, 8802
MlyI GAGTC 9 cut(s) 944, 1883, 3356, 3918, 5333, 5576, 7778, 8999, 9056
Mox20I TGGCCA 4 cut(s) 2618, 3365, 5547, 8802
Mph1103I ATGCAT 5 cut(s) 2037, 2156, 2686, 5364, 9604
MroI TCCGGA 4 cut(s) 799, 4306, 4558, 8269
MroXI GAANNNNTTC 5 cut(s) 835, 3581, 4596, 6529, 8409
MscI TGGCCA 4 cut(s) 2618, 3365, 5547, 8802
Msp20I TGGCCA 4 cut(s) 2618, 3365, 5547, 8802
MspA1I CMGCKG 4 cut(s) 6350, 8308, 8834, 9485
MspCI CTTAAG 3 cut(s) 3404, 5503, 7322
MunI CAATTG 2 cut(s) 2922, 8292
Mva1269I GAATGC 3 cut(s) 4016, 6424, 8854
MvnI CGCG 3 cut(s) 1187, 4533, 4535
NciI CCSGG 1 cut(s) 8873
NdeI CATATG 1 cut(s) 4130
NheI GCTAGC 2 cut(s) 5708, 6041
NmuCI GTSAC 3 cut(s) 2322, 2445, 8991
NsbI TGCGCA 1 cut(s) 1901
NsiI ATGCAT 5 cut(s) 2037, 2156, 2686, 5364, 9604
NspV TTCGAA 1 cut(s) 2803
OliI CACNNNNGTG 3 cut(s) 6834, 9669, 9688
PaeI GCATGC 3 cut(s) 2039, 5434, 8552
PaeR7I CTCGAG 1 cut(s) 5577
PagI TCATGA 2 cut(s) 3280, 7369
PceI AGGCCT 2 cut(s) 2997, 9146
PciI ACATGT 3 cut(s) 3946, 5738, 7878
PciSI GCTCTTC 2 cut(s) 64, 6052
PctI GAATGC 3 cut(s) 4016, 6424, 8854
PdmI GAANNNNTTC 5 cut(s) 835, 3581, 4596, 6529, 8409
PflMI CCANNNNNTGG 2 cut(s) 362, 2854
PfoI TCCNGGA 4 cut(s) 1770, 3927, 5403, 6438
PinAI ACCGGT 2 cut(s) 2075, 2731
Ple19I CGATCG 1 cut(s) 2386
PleI GAGTC 9 cut(s) 943, 1882, 3355, 3918, 5332, 5575, 7778, 8998, 9056
PmaCI CACGTG 1 cut(s) 1997
PmlI CACGTG 1 cut(s) 1997
PpsI GAGTC 9 cut(s) 943, 1882, 3355, 3918, 5332, 5575, 7778, 8998, 9056
Ppu21I YACGTR 2 cut(s) 1997, 6710
PpuMI RGGWCCY 8 cut(s) 26, 2410, 2700, 4982, 6959, 8471, 9052, 9625
PscI ACATGT 3 cut(s) 3946, 5738, 7878
PshBI ATTAAT 1 cut(s) 6999
PsiI TTATAA 1 cut(s) 408
Psp124BI GAGCTC 2 cut(s) 5584, 5677
Psp5II RGGWCCY 8 cut(s) 26, 2410, 2700, 4982, 6959, 8471, 9052, 9625
PspCI CACGTG 1 cut(s) 1997
PspEI GGTNACC 2 cut(s) 2322, 3476
PspFI CCCAGC 4 cut(s) 69, 3539, 7307, 8136
PspPPI RGGWCCY 8 cut(s) 26, 2410, 2700, 4982, 6959, 8471, 9052, 9625
PspXI VCTCGAGB 1 cut(s) 5577
PsrI GAACNNNNNNTAC 2 cut(s) 5163, 5195
PstI CTGCAG 8 cut(s) 34, 1052, 2442, 5604, 6967, 7723, 7918, 8163
PstNI CAGNNNCTG 1 cut(s) 6643
PsuI RGATCY 7 cut(s) 341, 1763, 1905, 3434, 5786, 7348, 8809
PvuI CGATCG 1 cut(s) 2386
PvuII CAGCTG 3 cut(s) 6350, 8308, 8834
SacI GAGCTC 2 cut(s) 5584, 5677
SalI GTCGAC 1 cut(s) 2244
SapI GCTCTTC 2 cut(s) 64, 6052
ScaI AGTACT 2 cut(s) 36, 8362
SchI GAGTC 9 cut(s) 944, 1883, 3356, 3918, 5333, 5576, 7778, 8999, 9056
SexAI ACCWGGT 1 cut(s) 5005
Sfr274I CTCGAG 1 cut(s) 5577
SfuI TTCGAA 1 cut(s) 2803
SgrAI CRCCGGYG 1 cut(s) 2731
SlaI CTCGAG 1 cut(s) 5577
SmlI CTYRAG 9 cut(s) 613, 1060, 3404, 3881, 5147, 5503, 5577, 5857, 7322
SmoI CTYRAG 9 cut(s) 613, 1060, 3404, 3881, 5147, 5503, 5577, 5857, 7322
SpeI ACTAGT 1 cut(s) 1124
SphI GCATGC 3 cut(s) 2039, 5434, 8552
SseBI AGGCCT 2 cut(s) 2997, 9146
SspI AATATT 6 cut(s) 1659, 1709, 4190, 4279, 6132, 6513
SstI GAGCTC 2 cut(s) 5584, 5677
StuI AGGCCT 2 cut(s) 2997, 9146
StyI CCWWGG 3 cut(s) 2327, 3135, 9300
TaiI ACGT 8 cut(s) 1999, 4906, 5194, 5989, 6240, 6712, 8107, 8209
TatI WGTACW 9 cut(s) 34, 230, 1159, 4362, 4718, 5878, 7727, 8360, 9605
TauI GCSGC 5 cut(s) 2546, 4451, 6436, 6985, 8840
TseFI GTSAC 3 cut(s) 2322, 2445, 8991
Tsp45I GTSAC 3 cut(s) 2322, 2445, 8991
TspGWI ACGGA 3 cut(s) 3290, 5476, 7529
Van91I CCANNNNNTGG 2 cut(s) 362, 2854
Vha464I CTTAAG 3 cut(s) 3404, 5503, 7322
VneI GTGCAC 4 cut(s) 280, 4732, 6711, 7068
VspI ATTAAT 1 cut(s) 6999
XbaI TCTAGA 6 cut(s) 1172, 3169, 3920, 4487, 7057, 9058
XcmI CCANNNNNNNNNTGG 3 cut(s) 2819, 5183, 9183
XhoI CTCGAG 1 cut(s) 5577
XmiI GTMKAC 3 cut(s) 1038, 2245, 8946
XmnI GAANNNNTTC 5 cut(s) 835, 3581, 4596, 6529, 8409
ZrmI AGTACT 2 cut(s) 36, 8362
Zsp2I ATGCAT 5 cut(s) 2037, 2156, 2686, 5364, 9604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.