phagosome-lysosome fusion involved in apoptotic cell clearance
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G39420 AT4G39420 AT4G39420 AT4G39420 |
| fragaria_vesca | FvH4_1g23050 FvH4_1g23050 |
| malus_domestica | MD15G1330600.v1.1 |
| prunus_persica | Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 |
| pyrus_communis | pycom15g29460 |
| rosa_chinensis | RchiOBHm_Chr2g0117761 |
| rosa_laevigata | RLG00000018366 |
| rosa_multiflora | Rmu_co8468041.1_g000001 Rmu_sc0001617.1_g000039 Rmu_sc0001617.1_g000040 Rmu_sc0004795.1_g000020 |
| rosa_roxburghii | Rroxscaffold_2G00126250 |
| rosa_rugosa | Rorug02G0213800 |
| rosa_samantha | Rh2AG269900 Rh2BG281300 Rh2CG270200 Rh2DG277600 Rh2DG295600 |
| rosa_wichuraiana | Rw2G021310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 432 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 5545, 5972 |
| Acc16I | TGCGCA | 1 cut(s) | 1928 |
| Acc36I | ACCTGC | 4 cut(s) | 5018, 7945, 8176, 8506 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1262 |
| AccBSI | CCGCTC | 1 cut(s) | 7428 |
| AccI | GTMKAC | 1 cut(s) | 6818 |
| AccII | CGCG | 2 cut(s) | 4554, 4556 |
| AccIII | TCCGGA | 3 cut(s) | 27, 4327, 4579 |
| AcoI | YGGCCR | 3 cut(s) | 3384, 5566, 7796 |
| AcyI | GRCGYC | 1 cut(s) | 5984 |
| AfeI | AGCGCT | 1 cut(s) | 2398 |
| AflII | CTTAAG | 2 cut(s) | 3425, 5524 |
| AflIII | ACRYGT | 4 cut(s) | 1504, 3967, 5759, 6914 |
| AgeI | ACCGGT | 1 cut(s) | 2752 |
| AhlI | ACTAGT | 1 cut(s) | 1151 |
| AjiI | CACGTC | 4 cut(s) | 4925, 5213, 6008, 8231 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 5931, 5963, 8550, 8582 |
| AleI | CACNNNNGTG | 1 cut(s) | 6858 |
| Alw21I | GWGCWC | 9 cut(s) | 4148, 4381, 4757, 5605, 5698, 5885, 6739, 6855, 7096 |
| Alw44I | GTGCAC | 5 cut(s) | 4377, 4753, 6735, 6851, 7092 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 269, 1672, 6503 |
| Ama87I | CYCGRG | 2 cut(s) | 5598, 7259 |
| Aor13HI | TCCGGA | 3 cut(s) | 27, 4327, 4579 |
| Aor51HI | AGCGCT | 1 cut(s) | 2398 |
| ApaI | GGGCCC | 1 cut(s) | 95 |
| ApaLI | GTGCAC | 5 cut(s) | 4377, 4753, 6735, 6851, 7092 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3444, 3476 |
| AsiGI | ACCGGT | 1 cut(s) | 2752 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 246, 954, 3602, 3969, 4617, 6556, 8389, 8433 |
| AspA2I | CCTAGG | 1 cut(s) | 7066 |
| AspLEI | GCGC | 8 cut(s) | 1929, 2399, 3654, 4556, 5417, 6762, 6781, 8586 |
| AsuC2I | CCSGG | 1 cut(s) | 824 |
| AsuII | TTCGAA | 1 cut(s) | 2824 |
| AsuNHI | GCTAGC | 2 cut(s) | 5729, 6062 |
| AvaI | CYCGRG | 2 cut(s) | 5598, 7259 |
| AvrII | CCTAGG | 1 cut(s) | 7066 |
| AxyI | CCTNAGG | 1 cut(s) | 3197 |
| BaeGI | GKGCMC | 8 cut(s) | 95, 4381, 4492, 4757, 6739, 6802, 6855, 7096 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4797, 4830 |
| BalI | TGGCCA | 2 cut(s) | 3386, 5568 |
| BamHI | GGATCC | 1 cut(s) | 30 |
| BanII | GRGCYC | 3 cut(s) | 95, 5605, 5698 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2535, 2567 |
| BauI | CACGAG | 4 cut(s) | 1835, 3111, 4424, 5691 |
| BbsI | GAAGAC | 2 cut(s) | 239, 8276 |
| Bbv12I | GWGCWC | 9 cut(s) | 4148, 4381, 4757, 5605, 5698, 5885, 6739, 6855, 7096 |
| BbvCI | CCTCAGC | 1 cut(s) | 6487 |
| BceAI | ACGGC | 3 cut(s) | 3608, 6897, 7811 |
| BciVI | GTATCC | 2 cut(s) | 1859, 1960 |
| BclI | TGATCA | 2 cut(s) | 1885, 3826 |
| BcnI | CCSGG | 1 cut(s) | 824 |
| BcuI | ACTAGT | 1 cut(s) | 1151 |
| BfoI | RGCGCY | 1 cut(s) | 2400 |
| BfrI | CTTAAG | 2 cut(s) | 3425, 5524 |
| BfuAI | ACCTGC | 4 cut(s) | 5018, 7945, 8176, 8506 |
| BfuI | GTATCC | 2 cut(s) | 1859, 1960 |
| BglII | AGATCT | 3 cut(s) | 365, 5807, 7372 |
| BlnI | CCTAGG | 1 cut(s) | 7066 |
| BmcAI | AGTACT | 1 cut(s) | 7803 |
| BmeT110I | CYCGRG | 2 cut(s) | 5598, 7259 |
| BmgBI | CACGTC | 4 cut(s) | 4925, 5213, 6008, 8231 |
| BmrI | ACTGGG | 7 cut(s) | 1938, 3802, 3937, 4744, 6131, 7135, 7153 |
| BmtI | GCTAGC | 2 cut(s) | 5733, 6066 |
| BmuI | ACTGGG | 7 cut(s) | 1938, 3802, 3937, 4744, 6131, 7135, 7153 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1251 |
| BpiI | GAAGAC | 2 cut(s) | 239, 8276 |
| BpmI | CTGGAG | 8 cut(s) | 4781, 5447, 6207, 7191, 7573, 7988, 8004, 8533 |
| Bpu10I | CCTNAGC | 3 cut(s) | 3241, 4998, 6487 |
| Bpu14I | TTCGAA | 1 cut(s) | 2824 |
| BpuEI | CTTGAG | 6 cut(s) | 1072, 1452, 3923, 5189, 5899, 7331 |
| BpuMI | CCSGG | 1 cut(s) | 824 |
| BsaAI | YACGTR | 1 cut(s) | 6734 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1870, 5017, 5616 |
| BsaHI | GRCGYC | 1 cut(s) | 5984 |
| BsaI | GGTCTC | 1 cut(s) | 3125 |
| BsaJI | CCNNGG | 7 cut(s) | 2125, 2173, 2345, 2354, 5115, 7066, 7260 |
| BsaWI | WCCGGW | 7 cut(s) | 27, 518, 1135, 1624, 2752, 4327, 4579 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2779, 2809, 3396, 3426, 6360, 6390, 6936, 6966 |
| Bse118I | RCCGGY | 1 cut(s) | 2752 |
| Bse21I | CCTNAGG | 1 cut(s) | 3197 |
| Bse3DI | GCAATG | 9 cut(s) | 547, 1359, 2608, 3389, 4635, 5466, 6243, 7285, 8115 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1870, 5017, 5616 |
| BseAI | TCCGGA | 3 cut(s) | 27, 4327, 4579 |
| BseDI | CCNNGG | 7 cut(s) | 2125, 2173, 2345, 2354, 5115, 7066, 7260 |
| BseJI | GATNNNNATC | 3 cut(s) | 1870, 5017, 5616 |
| BseMI | GCAATG | 9 cut(s) | 547, 1359, 2608, 3389, 4635, 5466, 6243, 7285, 8115 |
| BseRI | GAGGAG | 7 cut(s) | 740, 3494, 4493, 5159, 6466, 7277, 8378 |
| BseSI | GKGCMC | 8 cut(s) | 95, 4381, 4492, 4757, 6739, 6802, 6855, 7096 |
| BseYI | CCCAGC | 2 cut(s) | 3560, 7331 |
| BsgI | GTGCAG | 3 cut(s) | 5148, 8043, 8204 |
| Bsh1236I | CGCG | 2 cut(s) | 4554, 4556 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2413 |
| BshTI | ACCGGT | 1 cut(s) | 2752 |
| BsiEI | CGRYCG | 1 cut(s) | 2413 |
| BsiHKAI | GWGCWC | 9 cut(s) | 4148, 4381, 4757, 5605, 5698, 5885, 6739, 6855, 7096 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5598, 7259 |
| BsiSI | CCGG | 8 cut(s) | 28, 519, 824, 1136, 1625, 2753, 4328, 4580 |
| BslFI | GGGAC | 7 cut(s) | 368, 681, 2450, 3050, 6119, 7296, 8128 |
| BsmBI | CGTCTC | 2 cut(s) | 3445, 4598 |
| BsmFI | GGGAC | 7 cut(s) | 368, 681, 2450, 3050, 6119, 7296, 8128 |
| BsmI | GAATGC | 1 cut(s) | 4037 |
| Bso31I | GGTCTC | 1 cut(s) | 3125 |
| BsoBI | CYCGRG | 2 cut(s) | 5598, 7259 |
| Bsp119I | TTCGAA | 1 cut(s) | 2824 |
| Bsp120I | GGGCCC | 1 cut(s) | 91 |
| Bsp13I | TCCGGA | 3 cut(s) | 27, 4327, 4579 |
| Bsp1407I | TGTACA | 1 cut(s) | 1065 |
| Bsp19I | CCATGG | 1 cut(s) | 2354 |
| BspEI | TCCGGA | 3 cut(s) | 27, 4327, 4579 |
| BspFNI | CGCG | 2 cut(s) | 4554, 4556 |
| BspHI | TCATGA | 3 cut(s) | 958, 3301, 7393 |
| BspMAI | CTGCAG | 4 cut(s) | 1079, 2469, 5625, 7942 |
| BspMI | ACCTGC | 4 cut(s) | 5018, 7945, 8176, 8506 |
| BspOI | GCTAGC | 2 cut(s) | 5733, 6066 |
| BspQI | GCTCTTC | 2 cut(s) | 3328, 6073 |
| BspT104I | TTCGAA | 1 cut(s) | 2824 |
| BspTI | CTTAAG | 2 cut(s) | 3425, 5524 |
| BspTNI | GGTCTC | 1 cut(s) | 3125 |
| BsrBI | CCGCTC | 1 cut(s) | 7428 |
| BsrDI | GCAATG | 9 cut(s) | 547, 1359, 2608, 3389, 4635, 5466, 6243, 7285, 8115 |
| BsrFI | RCCGGY | 1 cut(s) | 2752 |
| BsrGI | TGTACA | 1 cut(s) | 1065 |
| BssAI | RCCGGY | 1 cut(s) | 2752 |
| BssECI | CCNNGG | 7 cut(s) | 2125, 2173, 2345, 2354, 5115, 7066, 7260 |
| BssNI | GRCGYC | 1 cut(s) | 5984 |
| BssSI | CACGAG | 4 cut(s) | 1835, 3111, 4424, 5691 |
| BssT1I | CCWWGG | 3 cut(s) | 2345, 2354, 7066 |
| Bst2BI | CACGAG | 4 cut(s) | 1835, 3111, 4424, 5691 |
| BstACI | GRCGYC | 1 cut(s) | 5984 |
| BstAFI | CTTAAG | 2 cut(s) | 3425, 5524 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 5222, 5558, 6242 |
| BstAUI | TGTACA | 1 cut(s) | 1065 |
| BstBAI | YACGTR | 1 cut(s) | 6734 |
| BstBI | TTCGAA | 1 cut(s) | 2824 |
| BstDSI | CCRYGG | 2 cut(s) | 2125, 2354 |
| BstEII | GGTNACC | 1 cut(s) | 2349 |
| BstFNI | CGCG | 2 cut(s) | 4554, 4556 |
| BstH2I | RGCGCY | 1 cut(s) | 2400 |
| BstHHI | GCGC | 8 cut(s) | 1929, 2399, 3654, 4556, 5417, 6762, 6781, 8586 |
| BstMCI | CGRYCG | 1 cut(s) | 2413 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1251 |
| BstPI | GGTNACC | 1 cut(s) | 2349 |
| BstSLI | GKGCMC | 8 cut(s) | 95, 4381, 4492, 4757, 6739, 6802, 6855, 7096 |
| BstUI | CGCG | 2 cut(s) | 4554, 4556 |
| BstV2I | GAAGAC | 2 cut(s) | 239, 8276 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4852 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3197 |
| BsuI | GTATCC | 2 cut(s) | 1859, 1960 |
| BtgI | CCRYGG | 2 cut(s) | 2125, 2354 |
| BtgZI | GCGATG | 2 cut(s) | 5799, 5816 |
| BtrI | CACGTC | 4 cut(s) | 4925, 5213, 6008, 8231 |
| BtsI | GCAGTG | 2 cut(s) | 2163, 4726 |
| BveI | ACCTGC | 4 cut(s) | 5018, 7945, 8176, 8506 |
| CaiI | CAGNNNCTG | 3 cut(s) | 269, 1672, 6503 |
| CciI | TCATGA | 3 cut(s) | 958, 3301, 7393 |
| CfoI | GCGC | 8 cut(s) | 1929, 2399, 3654, 4556, 5417, 6762, 6781, 8586 |
| Cfr10I | RCCGGY | 1 cut(s) | 2752 |
| CseI | GACGC | 4 cut(s) | 2447, 5973, 6489, 8063 |
| CsiI | ACCWGGT | 2 cut(s) | 815, 7692 |
| CspAI | ACCGGT | 1 cut(s) | 2752 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 554, 589, 2635, 2670, 6952, 6987 |
| DraI | TTTAAA | 1 cut(s) | 1534 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 5545, 5972 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 5545, 5972 |
| EaeI | YGGCCR | 3 cut(s) | 3384, 5566, 7796 |
| EciI | GGCGGA | 2 cut(s) | 5762, 6603 |
| Ecl136II | GAGCTC | 2 cut(s) | 5603, 5696 |
| Eco130I | CCWWGG | 3 cut(s) | 2345, 2354, 7066 |
| Eco24I | GRGCYC | 3 cut(s) | 95, 5605, 5698 |
| Eco31I | GGTCTC | 1 cut(s) | 3125 |
| Eco32I | GATATC | 4 cut(s) | 1746, 3537, 5891, 5957 |
| Eco47III | AGCGCT | 1 cut(s) | 2398 |
| Eco53kI | GAGCTC | 2 cut(s) | 5603, 5696 |
| Eco81I | CCTNAGG | 1 cut(s) | 3197 |
| Eco88I | CYCGRG | 2 cut(s) | 5598, 7259 |
| Eco91I | GGTNACC | 1 cut(s) | 2349 |
| EcoICRI | GAGCTC | 2 cut(s) | 5603, 5696 |
| EcoO109I | RGGNCCY | 8 cut(s) | 91, 92, 587, 2437, 2721, 4856, 5003, 8495 |
| EcoO65I | GGTNACC | 1 cut(s) | 2349 |
| EcoRI | GAATTC | 6 cut(s) | 1218, 1759, 3602, 3612, 5714, 6442 |
| EcoRV | GATATC | 4 cut(s) | 1746, 3537, 5891, 5957 |
| EcoT14I | CCWWGG | 3 cut(s) | 2345, 2354, 7066 |
| EcoT22I | ATGCAT | 5 cut(s) | 2183, 2707, 3781, 3916, 5385 |
| EcoT38I | GRGCYC | 3 cut(s) | 95, 5605, 5698 |
| ErhI | CCWWGG | 3 cut(s) | 2345, 2354, 7066 |
| Esp3I | CGTCTC | 2 cut(s) | 3445, 4598 |
| FaqI | GGGAC | 7 cut(s) | 368, 681, 2450, 3050, 6119, 7296, 8128 |
| FauI | CCCGC | 1 cut(s) | 8407 |
| FauNDI | CATATG | 2 cut(s) | 2707, 4151 |
| FbaI | TGATCA | 2 cut(s) | 1885, 3826 |
| FblI | GTMKAC | 1 cut(s) | 6818 |
| FriOI | GRGCYC | 3 cut(s) | 95, 5605, 5698 |
| FspI | TGCGCA | 1 cut(s) | 1928 |
| GlaI | GCGC | 8 cut(s) | 1928, 2398, 3653, 4555, 5416, 6761, 6780, 8585 |
| GsaI | CCCAGC | 2 cut(s) | 3564, 7335 |
| GsuI | CTGGAG | 8 cut(s) | 4781, 5447, 6207, 7191, 7573, 7988, 8004, 8533 |
| HaeII | RGCGCY | 1 cut(s) | 2400 |
| HapII | CCGG | 8 cut(s) | 28, 519, 824, 1136, 1625, 2753, 4328, 4580 |
| HgaI | GACGC | 4 cut(s) | 2447, 5973, 6489, 8063 |
| HhaI | GCGC | 8 cut(s) | 1929, 2399, 3654, 4556, 5417, 6762, 6781, 8586 |
| Hin1I | GRCGYC | 1 cut(s) | 5984 |
| Hin6I | GCGC | 8 cut(s) | 1927, 2397, 3652, 4554, 5415, 6760, 6779, 8584 |
| HinP1I | GCGC | 8 cut(s) | 1927, 2397, 3652, 4554, 5415, 6760, 6779, 8584 |
| HincII | GTYRAC | 7 cut(s) | 397, 2287, 2908, 3676, 6819, 8082, 8260 |
| HindII | GTYRAC | 7 cut(s) | 397, 2287, 2908, 3676, 6819, 8082, 8260 |
| HindIII | AAGCTT | 4 cut(s) | 1241, 1892, 6105, 8066 |
| HpaI | GTTAAC | 1 cut(s) | 397 |
| HpaII | CCGG | 8 cut(s) | 28, 519, 824, 1136, 1625, 2753, 4328, 4580 |
| Hpy99I | CGWCG | 2 cut(s) | 2463, 7797 |
| HpyCH4IV | ACGT | 7 cut(s) | 3327, 4924, 5212, 6007, 6733, 8128, 8230 |
| HpySE526I | ACGT | 7 cut(s) | 3327, 4924, 5212, 6007, 6733, 8128, 8230 |
| Hsp92I | GRCGYC | 1 cut(s) | 5984 |
| HspAI | GCGC | 8 cut(s) | 1927, 2397, 3652, 4554, 5415, 6760, 6779, 8584 |
| Kpn2I | TCCGGA | 3 cut(s) | 27, 4327, 4579 |
| Ksp22I | TGATCA | 2 cut(s) | 1885, 3826 |
| KspAI | GTTAAC | 1 cut(s) | 397 |
| LguI | GCTCTTC | 2 cut(s) | 3328, 6073 |
| MabI | ACCWGGT | 2 cut(s) | 815, 7692 |
| MaeII | ACGT | 7 cut(s) | 3327, 4924, 5212, 6007, 6733, 8128, 8230 |
| MbiI | CCGCTC | 1 cut(s) | 7428 |
| MfeI | CAATTG | 2 cut(s) | 2943, 8316 |
| MlsI | TGGCCA | 2 cut(s) | 3386, 5568 |
| MluNI | TGGCCA | 2 cut(s) | 3386, 5568 |
| MlyI | GAGTC | 9 cut(s) | 1395, 1895, 3939, 5354, 5597, 6814, 6824, 7802, 8206 |
| MmeI | TCCRAC | 9 cut(s) | 945, 1030, 3155, 3310, 3961, 6346, 7137, 7757, 7912 |
| Mox20I | TGGCCA | 2 cut(s) | 3386, 5568 |
| Mph1103I | ATGCAT | 5 cut(s) | 2183, 2707, 3781, 3916, 5385 |
| MroI | TCCGGA | 3 cut(s) | 27, 4327, 4579 |
| MroXI | GAANNNNTTC | 8 cut(s) | 246, 954, 3602, 3969, 4617, 6556, 8389, 8433 |
| MscI | TGGCCA | 2 cut(s) | 3386, 5568 |
| MslI | CAYNNNNRTG | 7 cut(s) | 444, 3875, 4374, 5574, 6200, 6858, 7417 |
| Msp20I | TGGCCA | 2 cut(s) | 3386, 5568 |
| MspA1I | CMGCKG | 4 cut(s) | 6374, 6491, 7006, 8332 |
| MspCI | CTTAAG | 2 cut(s) | 3425, 5524 |
| MspI | CCGG | 8 cut(s) | 28, 519, 824, 1136, 1625, 2753, 4328, 4580 |
| MunI | CAATTG | 2 cut(s) | 2943, 8316 |
| Mva1269I | GAATGC | 1 cut(s) | 4037 |
| MvnI | CGCG | 2 cut(s) | 4554, 4556 |
| NciI | CCSGG | 1 cut(s) | 824 |
| NcoI | CCATGG | 1 cut(s) | 2354 |
| NdeI | CATATG | 2 cut(s) | 2707, 4151 |
| NheI | GCTAGC | 2 cut(s) | 5729, 6062 |
| NmeAIII | GCCGAG | 1 cut(s) | 3420 |
| NmuCI | GTSAC | 6 cut(s) | 1914, 2349, 2656, 3323, 4563, 5507 |
| NsbI | TGCGCA | 1 cut(s) | 1928 |
| NsiI | ATGCAT | 5 cut(s) | 2183, 2707, 3781, 3916, 5385 |
| NspV | TTCGAA | 1 cut(s) | 2824 |
| OliI | CACNNNNGTG | 1 cut(s) | 6858 |
| PaeI | GCATGC | 7 cut(s) | 942, 2066, 3918, 5455, 6046, 7355, 8576 |
| PaeR7I | CTCGAG | 1 cut(s) | 5598 |
| PagI | TCATGA | 3 cut(s) | 958, 3301, 7393 |
| PciI | ACATGT | 4 cut(s) | 1504, 3967, 5759, 6914 |
| PciSI | GCTCTTC | 2 cut(s) | 3328, 6073 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3460 |
| PctI | GAATGC | 1 cut(s) | 4037 |
| PdmI | GAANNNNTTC | 8 cut(s) | 246, 954, 3602, 3969, 4617, 6556, 8389, 8433 |
| PflFI | GACNNNGTC | 1 cut(s) | 1030 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1262 |
| PfoI | TCCNGGA | 4 cut(s) | 822, 1797, 3948, 6184 |
| PinAI | ACCGGT | 1 cut(s) | 2752 |
| Ple19I | CGATCG | 1 cut(s) | 2413 |
| PleI | GAGTC | 9 cut(s) | 1395, 1895, 3939, 5353, 5596, 6814, 6823, 7802, 8205 |
| PpsI | GAGTC | 9 cut(s) | 1395, 1895, 3939, 5353, 5596, 6814, 6823, 7802, 8205 |
| Ppu21I | YACGTR | 1 cut(s) | 6734 |
| PpuMI | RGGWCCY | 4 cut(s) | 2437, 2721, 5003, 8495 |
| PscI | ACATGT | 4 cut(s) | 1504, 3967, 5759, 6914 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1251 |
| PsiI | TTATAA | 1 cut(s) | 432 |
| Psp124BI | GAGCTC | 2 cut(s) | 5605, 5698 |
| Psp5II | RGGWCCY | 4 cut(s) | 2437, 2721, 5003, 8495 |
| PspEI | GGTNACC | 1 cut(s) | 2349 |
| PspFI | CCCAGC | 2 cut(s) | 3560, 7331 |
| PspOMI | GGGCCC | 1 cut(s) | 91 |
| PspPPI | RGGWCCY | 4 cut(s) | 2437, 2721, 5003, 8495 |
| PspXI | VCTCGAGB | 1 cut(s) | 5598 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5184, 5216 |
| PstI | CTGCAG | 4 cut(s) | 1079, 2469, 5625, 7942 |
| PstNI | CAGNNNCTG | 3 cut(s) | 269, 1672, 6503 |
| PsyI | GACNNNGTC | 1 cut(s) | 1030 |
| PvuI | CGATCG | 1 cut(s) | 2413 |
| PvuII | CAGCTG | 3 cut(s) | 6374, 6491, 8332 |
| RseI | CAYNNNNRTG | 7 cut(s) | 444, 3875, 4374, 5574, 6200, 6858, 7417 |
| SacI | GAGCTC | 2 cut(s) | 5605, 5698 |
| SalI | GTCGAC | 1 cut(s) | 6817 |
| SapI | GCTCTTC | 2 cut(s) | 3328, 6073 |
| ScaI | AGTACT | 1 cut(s) | 7803 |
| SchI | GAGTC | 9 cut(s) | 1395, 1895, 3939, 5354, 5597, 6814, 6824, 7802, 8206 |
| SexAI | ACCWGGT | 2 cut(s) | 815, 7692 |
| Sfr274I | CTCGAG | 1 cut(s) | 5598 |
| SfuI | TTCGAA | 1 cut(s) | 2824 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2752 |
| SlaI | CTCGAG | 1 cut(s) | 5598 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 444, 3875, 4374, 5574, 6200, 6858, 7417 |
| SmlI | CTYRAG | 9 cut(s) | 1087, 1467, 3425, 3902, 5168, 5524, 5598, 5878, 7346 |
| SmoI | CTYRAG | 9 cut(s) | 1087, 1467, 3425, 3902, 5168, 5524, 5598, 5878, 7346 |
| SpeI | ACTAGT | 1 cut(s) | 1151 |
| SphI | GCATGC | 7 cut(s) | 942, 2066, 3918, 5455, 6046, 7355, 8576 |
| SstI | GAGCTC | 2 cut(s) | 5605, 5698 |
| StyI | CCWWGG | 3 cut(s) | 2345, 2354, 7066 |
| TaiI | ACGT | 7 cut(s) | 3330, 4927, 5215, 6010, 6736, 8131, 8233 |
| TaqI | TCGA | 9 cut(s) | 2824, 2839, 3008, 3610, 3690, 3844, 5537, 5599, 6818 |
| TaqII | GACCGA | 1 cut(s) | 4303 |
| TatI | WGTACW | 7 cut(s) | 1065, 1186, 2551, 4739, 5899, 7751, 7801 |
| TauI | GCSGC | 4 cut(s) | 2573, 4472, 6460, 7009 |
| TseFI | GTSAC | 6 cut(s) | 1914, 2349, 2656, 3323, 4563, 5507 |
| Tsp45I | GTSAC | 6 cut(s) | 1914, 2349, 2656, 3323, 4563, 5507 |
| TspGWI | ACGGA | 7 cut(s) | 5, 3311, 4583, 4622, 5497, 7553, 7913 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1030 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1262 |
| Vha464I | CTTAAG | 2 cut(s) | 3425, 5524 |
| VneI | GTGCAC | 5 cut(s) | 4377, 4753, 6735, 6851, 7092 |
| XbaI | TCTAGA | 3 cut(s) | 3190, 3941, 7081 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5204 |
| XhoI | CTCGAG | 1 cut(s) | 5598 |
| XmaJI | CCTAGG | 1 cut(s) | 7066 |
| XmiI | GTMKAC | 1 cut(s) | 6818 |
| XmnI | GAANNNNTTC | 8 cut(s) | 246, 954, 3602, 3969, 4617, 6556, 8389, 8433 |
| ZrmI | AGTACT | 1 cut(s) | 7803 |
| Zsp2I | ATGCAT | 5 cut(s) | 2183, 2707, 3781, 3916, 5385 |