Rw2G021310

phagosome-lysosome fusion involved in apoptotic cell clearance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003216
Physical Location & Seq
Reverse (-)
29519036 .. 29538050
19015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021310.1

Sequence Viewer

Length: 9645 bp
ATGGATTTGTCTGTGGGTGATAAAGGACTTGCTACACTTCAGTTGCTCAAATGGGGCCCTTCTCAGCCCCAACTAAACTTGTCAGAATTTCGTGAAGCCTTCATTTCACCTACAAGACAGTTATTATTATTGCTTTCGTATCAGTGTGAGGCTTTATTGTTTCCTCTAATTACAGGTAGTAATAATTTGGAGTGTAATATTGATGAAAGTCTTCAAAGTCCAGAGACAGAGCCTGGTAGGTCAGATTCAATAAGGGACGATTTGCCATGCACATCTGGATCATTAGGAGATGTTGATAATGATTTGAGTTTTGGAGGGGACAGTTTAAGATCTAAAAGTTACCCTTTTGTTGGTGATGTTAACTCTCTGGCTTGGGGCGTTTGTGAGGACACTTATAATCAGCACAAGGATGCTTTATTTAGAGAGCTTTTGTTTGTGTGTGGCAAGCAAGGTATTATGGTCCATGCTTTTGTTGAATCTACCGGAAATACTGCAACAACCAGCAATGCACGGGAAGGTGGGTATGGGCAAGGGAGGTGGGTTGAGTGGGGGCCTTCCGCTTCTTTAATTGGAAATATGGAGGTGGAGGAACCTACCAGCTTGAGTTCTGAAGCTACTGGAAATATTGAATTTAACAAATCCAATGGAAACAGTGAAAGTCCCCATATTTGTAATGTGGATGGGAATGAGGAGTTCTCAAAAAGTGTTGCTTCTAAAAGATGGTTGCAATCTTTTTTGACTAAAGTTGAAAATGTTGAATATAATGGTAAAATATTGACCAGGTTCCCGGAAAAGTCATTGTTGCCTAGCTCTGCAAGAGTTGTTTCATTTAGTTTATTTAATAGTAATTTGGCAATTTTGGACTGCCTTGCAAACAATGATTCTGCATCAGATAAGGCGTGCGGTCAGGAAACAGTTCATGAGTTGGAGAGTGATAAATCTCTGAAATTAGACATAACTTCATCTGATCCACATTTCAAGTCTGAGACTTTATCCAATCTTTTAGGTAGTGTTTCAAGCAATTCTCATTACTTCATTGGATTTGTTTTCACACAGGTTGATCCGGTAATTGTCAATACTAGTGATGAAAGTGGAAAAAGCAAGAAGAATAATGTACTGCTTATTGCTAGATTAGACCACATGGGAATTCATTGGGTTTCCTCAGTGAAGCTTGACGAAAGTCCAAATATTGGCTCAGTAGCACAATGGACAGACTTCCACTTTTCTGATAAACTTCTTGTTTGTCTTAATGCTTGTGGGCTAATTGTATTTTATGCAGCAATGTCAGGTGAGTATGTTGCACATATAGATATTTTACAGACTTTAGGACTCAACTCTGAGTTGCATTTGCAGAAGCAGGAAGCAGTTTCCACAGGTTATGATAAGCATATTACTCAAGTTGATGACGTTCAGAACAAATCAGTTTTGCAACATGTTGATTATTCTGGCAGGAGACTGTTTAAAAGGTTGATTTCTGCTTCACATACCTCTCTAGTAGCTGCTATTGATGATTATGGTGTAATATATGTGGTTTCTGCTGGTGAATATCTACCGGACAAATATTATACAAATGCGAAACTACTTCCACATATTCAGCATCTGGAACTTGGTATCTTGGCTGGTTGGGAGGTTGGTGGTTCTGATATAAGCCACCAGAGGGTATATTCTGACATATCTGGTTTGTGGAATTCTATCATTCCATCCATGATGAAAGGAAGATCCTTCCTGGATGGCTCTGGGAAACAAGTGCTTCAGAGAAACCACGAGTTATACCTCAAACAAGAAGGGATTGGATACAGATCAGAAGTAACTGATCAGAAGCTTGATGACTCTCACAGAAAGTCACACCTTATGCGCAGGATCTTTGTTCCCAGTTACAGATTTAGTGAGAAGGATACTATCTGTTTTTCTCCATTGGGAATTACTCAGCTTATGAAGAACCAAAATTTGCACGATCAGAGGGGTTCTCAAATTGTTCATCTCAATCTGCATGCAGAATCAGCAGTTCGTGATGACAGCTTTTTGAATACTGGTTGTAAAAAGGTTTATCTCCACGGGAAAGAAGAATCCTTTATTGATGAGGCAGTGGGTTGCACATTCCAGGGATGCATTTATTTGGTTACAGTAAGTGGACTTTCGGTGGTGCTTCCCTCTATAGCAGTTTCATCAAATTTTCTTCCCGTAGAAGTTATTGGATGTCGGCAGTTGTGTGTCAACTCAGGCATTGGTTATCAAGTGAAAGATATAAGGGAAGCTAAAGAATCTAAACAGCCTTGGTCACCATGGAATGTTGAAATTATGGACAGAGTTATCCTATATGAAAGCGCTGAAGAAGCCGATCGCTTATGCTTGGAGAATGGTTGGGACCTGAAAATATCTCGGATGCGTCGGCTGCAGTTGGCACTGGATTACTTGAAATTTGATGAGATAGAGCGATCATTAGAAAACCTTGTGGGTGTCAATTTGGCAGAAGAGGGTGTACTGAGATTGCTATTTGCGGCTGTTTATCTGATGCTTCGTAAAGTTGGCAATGATAATGAGGTTTCTGCTGCATCAAGGCTTCTTGCATTAGCCACTTTTTTTGCAACGAAAATGATTCGCAAGTATTGGTTGCTAGAACATAGGAAAGATGCATATGAATCTGGTAGGACCCAAATTCTCTCTCTTCCACCAGTTTCACCGGTGAAGGAAGAAGATGAAATGGCAAATTCAAGGAGGCTTCGTGAGATGGCTCACTTTTTGGAGATAATTCGAAATCTGCAATCTCGACTTGGTTCCAAGTATAAGAGGCCAGGCCAAGAATCGGTGGATAGTGGGGAAGCATCAAGATTGGTTGACACTGATTTATTGCAGAACGAATCTCAGCTATCAATTGTATCTGTGGACACTATATCTTTGGAGACATCAAAACAGCATGAAGTTTCTTTCCCTGTATCGACATCAGGATTTAACTATACTGATAATCTTGCTTTAACACCTGTGGATTCTAAAGTCCCTTTGGACCCAGAGGATTTAAGTGAAGTATCTGCTCTTGTGCCACGAGGGGGTCTCTTAGAGAAGAAAATTCTTCCCTTAGAGAATCCGAAAGAGATGATTGCTCGTTGGAAGATAGATAATCTAGACCTTAGGGCTGTAGTCAGTGATGCTTTACTCTCTGGTCGTCTGCCCTTAGCAGTTCTTCAACTACATCTTCACCGTTCAAGAGATTCATTTTCTGGAAAGGAGCCTCATGATACTTTCACTGAAGTCCGTGACGTTGGAAGAGCTATTGCTTATGACCTATTTTTGAAGGGTGAATCTGGACTTGCTGTGGCCACATTGCAAAGGCTCGGAGAGGATGTAGAAACCAGCCTTAAGCAGTTATTACTCGGCACAGTGAGACGATCTCTTCGAGGGCAAATCACTGAGGAGATGAATAAATATGGTTATCTGGGATCTTATGAGTGGAAGATATTGGATAGGATATCACTTATTGAGAGGCTATACCCCAGCAGTAGTTTTTGGAAAACACTTCATGGACGGCAGAAAGAATTCACTCGAATTCCAGCAAGTTCCAGTTTGCCCAAGAGATATTATTTGCGCCTACTGGATTCACCTGTAGTCAACAATTTTACCATCGAGTGTGATGAAATTGATGGAGTTGTTTTTGGTTCATGGACAAACGTAAATGAAAATCCTTCTGGTCCTATGGTTGATGAAGATAATGCATACGCTGGTTACTGGGCTGCTGCTGCTGTATGGTTTAGTTTCTATGATCAAAGAACTGTTGATCGAATTGTTTTGGATCAGTCATCTTTCATGGGTGTGCATGTATTGTGGGAATCACAGCTTGAGTACCATGCATGCCACAATGACTGGGAGGAAGTCTCTAGACTCCTGGACCTTATTCCTGAACATGTTCTAGTAGTTGGAAGCCTTCAAATCAATTTGGATGGGCTACAGCCTGCTTCAACTTTTGAATGCAATAGAGGTTATGAGTATGGTGATTACCTCTGCTCTGTTGAAGAATTGGATGCTGTTTGCATGGATGTACCAGAGATCAAAGTTTTCAGGTTTTCGTGTAATGTTATGTGCTCCATATGGTTAAAGAGGCTGATGGAAGAGAAACTTGCGAGGAAACTAATTTTCTCAAAGGAATATTGGGAAGGCACAGCAGATATACTACCTCTTCTTGCCCGTTCTGGCTTCATTACTAGCAAGTATGAGATCCCTTCAGAGGATGATAATATTGAGGATATTTCGGTCCTGAAATTTCCGGATGGTGGTACCATACAGGCTTTACATAAACTACTTATTCATCATTGTGCACAATACAACTTGCCATTCCTTCTGGACCTTTACCTTGACCAGCATGAGTTGGTGGCAGATAGTGATTCAGTTCGTTCACTTCAGGAAGCCGCAGGAGATTGTCAATGGGCACGATGGTTGCTCCTCTCTAGGGTTAAAGGGTGTGAGTATGAAGCATCATTTTCCAATTCTCGCGCGATACTGTCACACAATCTAGTTCCGGATAGTAACCTCCGTGTTCCAGAGACGGATGAAATAATTCGTACTGTTGATGACATTGCAGAAGGAGGGGGAGAACTGGCAGCTCTGGCAACCTTAATGTATGCCTCTGCCCCCTTTCAAAGTTGTCTGAGTAGTGGCAGTGTAAAGAGGCATAGTAGTACATCAGCCCAGTGCACACTGGAGAATCTCAGGCCCACTCTTCAGCGTTTTCCTACACTGTGGCACACATTTGTATCAGCATGTTTCGGGCAAGATACAACTTCCAATCTTGTGGGGCCTAAAGCAAAGAATGGTTTTTCAGACTATTTAACATGGCGTGATGACATATTCTTCTCTTCTGGACGTGATACTTCACTTCTGCAAATGCTTCCATGCTGGTTTCCAAAGGCTGTGCGGAGGTTAATTCAGCTTTATGCTCAGGGTCCTCTTGGATGGCAATCAATAGCAGGTCCGCCTGTGGGAGAAGGTCTGCTGCAAAGAGATATAGAATTTGTCCTAAACACTGATGAGGATGTAGAAATCAGCTCACTCTCCTGGGAAGCAACTATCCAAAAACACATTGAGGAGGAACTCTACAATTCTGCACTTGAGGGAAATGCACTTGGGCTTGAACACCATTTACATCGTGGACGTGCATTAGCTGCTTTTAATCATTTTCTTGGTTTTAGAGTTCAAAAATTGAAATCAGAAGGAAAAGGACAAATACAAGCAAATGTTCAAGCAGATGTTCAGACACTTCTTGGACCTATAACAGAAAGTGAAGAGTCTCTTCTTTCATCAGTCATGCCACTTGCAATTATGCATTTTGAGGATTCTGTGCTGGTGACTTCATGCGCTTTTCTACTGGAGCTTTTCGGATTTTCTGCCAGCATGCTCCGCATAGACATTGCTGCCCTGAAACGGATGTCTTGCTTTTACAAATCTAGTGACAATATTGACAACTTAAGGAAACTTTCGACAAAAGGGTCTGCATTTCATGCAGTTGGCCATGAAAGTGATATAATGGAGTCTCTGGCTCGAGCTCTAGCCGATGAGTATCTGCAGCAGGATAGTGCAAGCATGAGTAAGCAAAAGGGTACTCCAAGTTTAGCTGCTCGTAAACAACCTTCACGAGCTCTCATGCTTTTCTTAGAATTTCTGGAGAAGGCTAGCCTTCCTCCAATGGCGGATGGGAAAACATGTGGGTCTTGGCTGTTAAGTGGCGATGGTGATGGAATTGAGTTGAGATCTCAACAGAAAGCTGCAAGCCATCGCTGGAACTTAGTTACAATTTTCTGCCAGATGCACCACCTTCCCTTGAGCACAAGATATCTTTCTGTACTGGCAAGAGACAATGATTGGGTTGGCTTTTTGTCAGAAGCTCAGATTGGTGGATATCCTTTTGACACGGTGGTCCAAGTGGCGTCAAAGGACTTCAGTGATCCACGTCTTAAAATTCATATTTCAACAGTTCTGAAAGGCATGCAGTCAAGAAGAAAAGCTAGCTCTTCAACAAATACAGATACTATGGAAAAAAGGAGTGGAGCTTCCTTTACCAATGATAGCATTTGTGTCCCAGTTGAGCTTTTTAGAATATTAGCAGAATGTGAAAAGCAGAAAAATCCTGGAGAGGCCATTTTGATGAAAGCAAAGGAGTTATCCTGGTCAATTTTGGCCATGATTGCATCATGCTTTTCAGACGTGTCTCCAATATCTTGCCTAACAGTCTGGCTGGAAATAACTGCTGCAAGGGAAACTTCATCTATCAAGGTGAATGATATTGCTTCCAGAATTGCAAATAATGTTGGAGCAGCTGTGGAAGCTACTAATGCTCTGCAAGCAGGAGGGAGTAAATCTCTTACATTTCATTACAATAGGCAGAATTCAAAGAGGAGGCGGCTTCTGGAACCCAACTCGGGAGATCCCTCAGCTGCTACAGCATCTGAAATTTTGGATTCTCCTGTGGGTGCAAAAATATTTGATAACCAGCGAACTATTTCTGAAGGGGAAAGAAATATAAAACTTGGCGGAAATATGAATTTAGCTGATTCTGATGAAGTGTCTGTTTCGCTGTCCAAGATGGTTTCAGTGCTTTGTGAGCAACACCTGTTCCTGCCTTTGTTAAGGGCATTTGAAATGTTCCTTCCTTCATGTTCTCTCGTACCTTTCATACGTGCACTTCAGGCATTTTCACAAATGCGCCTTTCTGAAGCATCAGCTCATTTAGATTCCTTTTGTGCCCGAATTAAAGAAGAGTCGACTCGCTTACAGGCAAATGTAGGAAGAGATGTGCACATTGGTGCATCATGGATAAGCTCTACGGCTATTAAAGCTGCGGATGCTATGCTTTTGACATGTCCATCTCCTTATGAAAAGAGATGCTTACTAAAACTCCTTGCTGCCACTGATTTTGGTGATGGAGGCTCCGCAGCTACTCATTACCAGCGGCTTCATTGGAAAATCAATTTAGCGGAGCCACTATTACGCAAGGATGATAATTTGCACCTAGGGAATGAAACTCTAGATGATGGTGCACTTGCAACAGCATTGGAAAGTAATAGACACTGGGAGCAAGCACGCAACTGGGCGAGACAGTTGGAGGCCAGTGCTGGAGTTTGGAAATCCGCTGTTCATCATGTAACTGAAACTCAGGCTGAATCTATGGTAGCTGAGTGGAAGGAATTTCTTTGGGATGTTCCCGAGGAGAGAATCGCTTTATGGGGACATTGCCAAACCCTCTTCATCAGATATTCCTTCCCTGCTTTACAGGCTGGGCTATTTTTCCTCAAGCATGCAGAAGCTCTGGAAAAAGATCTTCCAGCTAGGGAGCTTCATGAGCTGTTACTGCTTTCACTACAATGGTTGAGCGGAATGATTACTCTGTCCAATCCAGTTTATCCACTTCATCTGATTCGGGAAATTGAGACTAGAGTATGGCTCTTGGCGGTAGAATCAGAGGCACAAGGTAAGAGTGAAGGAGACTTCAATCTAAGCAGTTCCATCCGTGATCCTATTCACAAAAATAGCTCCAGTATTATTGACAGAACAGCAAGTATCATAACAAAAATGGACAATCACATTGGCACATTTAAGAACAGAACTGTAGAGAAACATGATGCAAGGGAAAATAACCAGGTGTATCACAAGAACCAAGTATTAGATGTTAGCTTTCCAACCACAACAGCAGGGAGTACAAAGACTAAGCGAAGGGCAAAAGGCTATGTGCCATTACGACGGCCGGTACTAGACTCACCAGAAAAAAGCGGTGATCTTGATGAGGGTTCTAATTCTCTCAATGTTAGATATGAATTGCAGTCTCAGGATGAAAACTCAAAAACGGAGATGTCTTTTTCACGGTGGGAGGAAAGGGTTGGACCTGCAGAGCTGGAAAGGGCTGTTCTTTCTTTATTAGAATTTGGACAAATAGCTGCTGCAAAGCAACTCCAGCATAAGCTGTCTCCAGTAAAAGTACCATCTGAAATTTTACTTGTGGACGCCGCACTGAAGCTTGCTGCTATGTCAACTCCAAGTAAAAAAGTATCTATAGCAATGCTTGATGAAGAAGTACGTTCAGTTATTCAGTCCCACCATATTCTAACCCAGCAACATGAAGTTGATACAGTGCAGGTTTTGGAGAGTCTAGCAACCATTTTTACTGAAGGTAGCGGACGTGGACTATGCAAGAGGATAATAGCAGTCAACAAAGCAGCAAGCATGTTAGGTCTTCCATTTGCGGAGGCATTTGTTAAGCAGCCAATTGAACTACTACAGCTGCTTTCCCTTAAAGCACAAGAATCATTTGAGGAGGCACATCTCCTTGTTAGAACTCATTCAATGCCCGCAGCCAGTGTTGCTCAGATTCTTTCCGAATCCTTTCTAAAGGGCTTATTAGCTGCTCATCGTGGGGGATATATGGATTCTCAAAAAGAAGAAGGACCTGCTCCCTTACTCTGGAGGTTTTCAGACTTCTTAAAGTGGGCAGAGCTTTGTCCTTCTGAACAAGAAATTGGGCATGCACTAATGCGCTTGGTTATTACTGGACAAGAAATACCACATGCCTGCGAGGTTGAGCTTCTAATTTTGTCACACCACTTCTACAAATTATCATCTTGCCTTGATGGAGTTGATGTACTTGTAGCCCTTGCAGCTACTAGAGTTGAAGCTTATGTGTCTGAGGGCGATTTTTCATGTTTGGCTCGTCTGATAACTGGAGTAGGAAACTTCCACGCCCTTAATTTCATTCTCGGAATTCTTATTGAAAATGGCCAACTGGATCTCCTTCTTCAGAAGTATTCAGCTGCTGCAGATGCGAATGCTGGCACTGCTGAGGCGGTCCGCGGATTTCGGATGGCTGTTCTGACATCATTGAAGCATTTTAATCCAAATGACCTTGATGCTTTTGCTATGGTCTATAATCACTTTGACATGAAACATGAAACGGCTGCTCTTTTGGAGTCACGAGCAGAGCAGTCATCAGAACAGTGGTTCTGTCGTTATGACAAGGATCAGAATGAGGACCTTCTAGACTCTATGCGTTATTACATTGAAGCTGCTGAAGTTCACAAATCCATTGATGCTGGCAACAAAACACGCAGAGCATGTGCTCAGGCCTCCCTCTTATCTCTTCAGATTCGAATGCCAGATTTCCAATGGCTGTACCGATCCGAAACCAATGCCAGGCGTGCCCTAGTTGAGCAGTCTCGTTTCCAAGAGGCCCTCATTGTTGCTGAAGCCTATGGCCTTAACCAGCCAAGTGAGTGGGCTTTGGTACTTTGGAACCAGATGCTCAAACCAGAAGTTCTGGAAGATTTTGTGGCTGAATTTGTGGCTGTTCTTCCTCTCCAGCCCTCAATGCTTGTTGATCTAGCAAGGTTTTACAGGGCCGAGGTGGCAGCGAGAGGGGACCAGTCCCAGTTCTCAGTTTGGTTAACTGGGGGAGGGTTGCCAGCGGAATGGGCAAAATATCTGGGGAGGTCGTTTCGATGCTTGTTGAAAAGGACTAGAGATTTGAAGTTGAGGTTGCAGCTGGCTACTGTGGCAACTGGTTTTGGAGATGTTATTGATGCATGCACGAAGGCGTTAGATAGGGTGCCTGAGAATGTAGGACCTCTTGTCCTGAGGAAAGGCCACGGTGGTGCTTATCTACCACTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spatacsin_C

Protein Analysis

3214

Amino Acids

358.43

Weight (kDa)

5.55

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spatacsin_C PF14649 2832 - 3123 1.5e-72 Spatacsin C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AasI GACNNNNNNGTC 2 cut(s) 5473, 5900
Acc16I TGCGCA 1 cut(s) 1856
Acc36I ACCTGC 4 cut(s) 4946, 7873, 8104, 8434
Acc65I GGTACC 1 cut(s) 4265
AccB1I GGYRCC 2 cut(s) 4265, 9577
AccB7I CCANNNNNTGG 1 cut(s) 1190
AccBSI CCGCTC 1 cut(s) 7356
AccI GTMKAC 1 cut(s) 6746
AccII CGCG 3 cut(s) 4482, 4484, 8826
AccIII TCCGGA 2 cut(s) 4255, 4507
AcoI YGGCCR 5 cut(s) 3312, 5494, 6162, 7724, 8752
AcyI GRCGYC 2 cut(s) 5912, 7983
AfeI AGCGCT 1 cut(s) 2326
AflII CTTAAG 2 cut(s) 3353, 5452
AflIII ACRYGT 5 cut(s) 1432, 3895, 5687, 6189, 6842
AgeI ACCGGT 1 cut(s) 2680
AhdI GACNNNNNGTC 1 cut(s) 9599
AhlI ACTAGT 1 cut(s) 1079
AjiI CACGTC 5 cut(s) 4853, 5141, 5936, 6190, 8159
AjuI GAANNNNNNNTTGG 4 cut(s) 5859, 5891, 8478, 8510
AleI CACNNNNGTG 3 cut(s) 6786, 9621, 9640
Alw44I GTGCAC 5 cut(s) 4305, 4681, 6663, 6779, 7020
AlwNI CAGNNNCTG 4 cut(s) 233, 1600, 6431, 8789
Ama87I CYCGRG 3 cut(s) 5526, 6403, 7187
Aor13HI TCCGGA 2 cut(s) 4255, 4507
Aor51HI AGCGCT 1 cut(s) 2326
ApaI GGGCCC 1 cut(s) 59
ApaLI GTGCAC 5 cut(s) 4305, 4681, 6663, 6779, 7020
ArsI GACNNNNNNTTYG 4 cut(s) 3372, 3404, 9478, 9510
AsiGI ACCGGT 1 cut(s) 2680
Asp700I GAANNNNTTC 8 cut(s) 210, 915, 3530, 3897, 4545, 6484, 8317, 8361
Asp718I GGTACC 1 cut(s) 4265
AspA2I CCTAGG 1 cut(s) 6994
AspLEI GCGC 7 cut(s) 1857, 2327, 3582, 4484, 5345, 6690, 8514
AsuC2I CCSGG 1 cut(s) 788
AsuII TTCGAA 2 cut(s) 2752, 9121
AsuNHI GCTAGC 2 cut(s) 5657, 5990
AvaI CYCGRG 3 cut(s) 5526, 6403, 7187
AvrII CCTAGG 1 cut(s) 6994
AxyI CCTNAGG 2 cut(s) 3125, 9605
BaeGI GKGCMC 9 cut(s) 59, 4309, 4420, 4685, 6667, 6730, 6783, 7024, 9175
BaeI ACNNNNGTAYC 2 cut(s) 4725, 4758
BalI TGGCCA 4 cut(s) 3314, 5496, 6164, 8754
BanI GGYRCC 2 cut(s) 4265, 9577
BanII GRGCYC 3 cut(s) 59, 5533, 5626
BarI GAAGNNNNNNTAC 4 cut(s) 2463, 2495, 5599, 5631
BauI CACGAG 4 cut(s) 1763, 3039, 5619, 8946
BbsI GAAGAC 2 cut(s) 203, 8204
BbvCI CCTCAGC 2 cut(s) 6415, 8814
BceAI ACGGC 4 cut(s) 3536, 6825, 7739, 8943
BcgI CGANNNNNNTGC 2 cut(s) 9143, 9177
BciVI GTATCC 2 cut(s) 1787, 1888
BclI TGATCA 2 cut(s) 1813, 3754
BcnI CCSGG 1 cut(s) 788
BcuI ACTAGT 1 cut(s) 1079
BfoI RGCGCY 1 cut(s) 2328
BfrI CTTAAG 2 cut(s) 3353, 5452
BfuAI ACCTGC 4 cut(s) 4946, 7873, 8104, 8434
BfuI GTATCC 2 cut(s) 1787, 1888
BglI GCCNNNNNGGC 1 cut(s) 9377
BglII AGATCT 3 cut(s) 329, 5735, 7300
BlnI CCTAGG 1 cut(s) 6994
BmeRI GACNNNNNGTC 1 cut(s) 9599
BmeT110I CYCGRG 3 cut(s) 5526, 6403, 7187
BmgBI CACGTC 5 cut(s) 4853, 5141, 5936, 6190, 8159
BmrI ACTGGG 9 cut(s) 1866, 3730, 3865, 4672, 6059, 7063, 7081, 9394, 9429
BmtI GCTAGC 2 cut(s) 5661, 5994
BmuI ACTGGG 9 cut(s) 1866, 3730, 3865, 4672, 6059, 7063, 7081, 9394, 9429
BoxI GACNNNNGTC 1 cut(s) 1179
BpiI GAAGAC 2 cut(s) 203, 8204
Bpu10I CCTNAGC 5 cut(s) 3169, 4926, 6415, 8814, 9093
Bpu14I TTCGAA 2 cut(s) 2752, 9121
BpuEI CTTGAG 6 cut(s) 622, 1380, 3851, 5117, 5827, 7259
BpuMI CCSGG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 6662
BsaBI GATNNNNATC 3 cut(s) 1798, 4945, 5544
BsaHI GRCGYC 2 cut(s) 5912, 7983
BsaI GGTCTC 1 cut(s) 3053
BsaWI WCCGGW 6 cut(s) 482, 1063, 1552, 2680, 4255, 4507
Bse118I RCCGGY 2 cut(s) 2680, 7726
Bse21I CCTNAGG 2 cut(s) 3125, 9605
Bse3DI GCAATG 8 cut(s) 511, 1287, 2536, 3317, 4563, 5394, 7213, 8043
Bse8I GATNNNNATC 3 cut(s) 1798, 4945, 5544
BseAI TCCGGA 2 cut(s) 4255, 4507
BseJI GATNNNNATC 3 cut(s) 1798, 4945, 5544
BseMI GCAATG 8 cut(s) 511, 1287, 2536, 3317, 4563, 5394, 7213, 8043
BseRI GAGGAG 7 cut(s) 704, 3422, 4421, 5087, 6394, 7205, 8306
BseSI GKGCMC 9 cut(s) 59, 4309, 4420, 4685, 6667, 6730, 6783, 7024, 9175
BseX3I CGGCCG 1 cut(s) 7724
BseYI CCCAGC 3 cut(s) 3488, 7259, 8088
BsgI GTGCAG 2 cut(s) 5076, 8132
Bsh1236I CGCG 3 cut(s) 4482, 4484, 8826
Bsh1285I CGRYCG 2 cut(s) 2341, 7727
BshNI GGYRCC 2 cut(s) 4265, 9577
BshTI ACCGGT 1 cut(s) 2680
BsiEI CGRYCG 2 cut(s) 2341, 7727
BsiHKCI CYCGRG 3 cut(s) 5526, 6403, 7187
BsiSI CCGG 8 cut(s) 483, 788, 1064, 1553, 2681, 4256, 4508, 7727
BsmBI CGTCTC 2 cut(s) 3373, 4526
BsmI GAATGC 3 cut(s) 3965, 8806, 9129
Bso31I GGTCTC 1 cut(s) 3053
BsoBI CYCGRG 3 cut(s) 5526, 6403, 7187
Bsp119I TTCGAA 2 cut(s) 2752, 9121
Bsp120I GGGCCC 1 cut(s) 55
Bsp13I TCCGGA 2 cut(s) 4255, 4507
Bsp19I CCATGG 1 cut(s) 2282
BspEI TCCGGA 2 cut(s) 4255, 4507
BspFNI CGCG 3 cut(s) 4482, 4484, 8826
BspHI TCATGA 3 cut(s) 919, 3229, 7321
BspMAI CTGCAG 4 cut(s) 2397, 5553, 7870, 8794
BspMI ACCTGC 4 cut(s) 4946, 7873, 8104, 8434
BspOI GCTAGC 2 cut(s) 5661, 5994
BspQI GCTCTTC 2 cut(s) 3256, 6001
BspT104I TTCGAA 2 cut(s) 2752, 9121
BspT107I GGYRCC 2 cut(s) 4265, 9577
BspTI CTTAAG 2 cut(s) 3353, 5452
BspTNI GGTCTC 1 cut(s) 3053
BsrBI CCGCTC 1 cut(s) 7356
BsrDI GCAATG 8 cut(s) 511, 1287, 2536, 3317, 4563, 5394, 7213, 8043
BsrFI RCCGGY 2 cut(s) 2680, 7726
BssAI RCCGGY 2 cut(s) 2680, 7726
BssNI GRCGYC 2 cut(s) 5912, 7983
BssSI CACGAG 4 cut(s) 1763, 3039, 5619, 8946
BssT1I CCWWGG 3 cut(s) 2273, 2282, 6994
Bst2BI CACGAG 4 cut(s) 1763, 3039, 5619, 8946
BstACI GRCGYC 2 cut(s) 5912, 7983
BstAFI CTTAAG 2 cut(s) 3353, 5452
BstAPI GCANNNNNTGC 2 cut(s) 5150, 5486
BstBAI YACGTR 1 cut(s) 6662
BstBI TTCGAA 2 cut(s) 2752, 9121
BstDSI CCRYGG 4 cut(s) 2053, 2282, 8824, 9616
BstEII GGTNACC 1 cut(s) 2277
BstFNI CGCG 3 cut(s) 4482, 4484, 8826
BstH2I RGCGCY 1 cut(s) 2328
BstHHI GCGC 7 cut(s) 1857, 2327, 3582, 4484, 5345, 6690, 8514
BstMCI CGRYCG 2 cut(s) 2341, 7727
BstPAI GACNNNNGTC 1 cut(s) 1179
BstPI GGTNACC 1 cut(s) 2277
BstSLI GKGCMC 9 cut(s) 59, 4309, 4420, 4685, 6667, 6730, 6783, 7024, 9175
BstUI CGCG 3 cut(s) 4482, 4484, 8826
BstV2I GAAGAC 2 cut(s) 203, 8204
BstX2I RGATCY 9 cut(s) 329, 1718, 1860, 3434, 4206, 5735, 6409, 7300, 8761
BstXI CCANNNNNNTGG 3 cut(s) 4780, 9246, 9441
BstYI RGATCY 9 cut(s) 329, 1718, 1860, 3434, 4206, 5735, 6409, 7300, 8761
BstZI CGGCCG 1 cut(s) 7724
Bsu36I CCTNAGG 2 cut(s) 3125, 9605
BsuI GTATCC 2 cut(s) 1787, 1888
BtgI CCRYGG 4 cut(s) 2053, 2282, 8824, 9616
BtgZI GCGATG 2 cut(s) 5727, 5744
BtrI CACGTC 5 cut(s) 4853, 5141, 5936, 6190, 8159
BtsI GCAGTG 3 cut(s) 2091, 4654, 8808
BveI ACCTGC 4 cut(s) 4946, 7873, 8104, 8434
CaiI CAGNNNCTG 4 cut(s) 233, 1600, 6431, 8789
CciI TCATGA 3 cut(s) 919, 3229, 7321
CfoI GCGC 7 cut(s) 1857, 2327, 3582, 4484, 5345, 6690, 8514
Cfr10I RCCGGY 2 cut(s) 2680, 7726
Cfr42I CCGCGG 1 cut(s) 8827
CpoI CGGWCCG 1 cut(s) 8821
CseI GACGC 3 cut(s) 2375, 5901, 7991
CsiI ACCWGGT 2 cut(s) 779, 7620
CspAI ACCGGT 1 cut(s) 2680
CspCI CAANNNNNGTGG 6 cut(s) 518, 553, 2563, 2598, 6880, 6915
CspI CGGWCCG 1 cut(s) 8821
DraI TTTAAA 1 cut(s) 1462
DrdI GACNNNNNNGTC 2 cut(s) 5473, 5900
DriI GACNNNNNGTC 1 cut(s) 9599
DseDI GACNNNNNNGTC 2 cut(s) 5473, 5900
EaeI YGGCCR 5 cut(s) 3312, 5494, 6162, 7724, 8752
EagI CGGCCG 1 cut(s) 7724
Eam1105I GACNNNNNGTC 1 cut(s) 9599
EciI GGCGGA 3 cut(s) 4950, 5690, 6531
Ecl136II GAGCTC 2 cut(s) 5531, 5624
EclXI CGGCCG 1 cut(s) 7724
Eco130I CCWWGG 3 cut(s) 2273, 2282, 6994
Eco147I AGGCCT 1 cut(s) 9098
Eco24I GRGCYC 3 cut(s) 59, 5533, 5626
Eco31I GGTCTC 1 cut(s) 3053
Eco32I GATATC 3 cut(s) 3465, 5819, 5885
Eco47III AGCGCT 1 cut(s) 2326
Eco52I CGGCCG 1 cut(s) 7724
Eco53kI GAGCTC 2 cut(s) 5531, 5624
Eco81I CCTNAGG 2 cut(s) 3125, 9605
Eco88I CYCGRG 3 cut(s) 5526, 6403, 7187
Eco91I GGTNACC 1 cut(s) 2277
EcoICRI GAGCTC 2 cut(s) 5531, 5624
EcoO65I GGTNACC 1 cut(s) 2277
EcoRI GAATTC 6 cut(s) 1146, 1687, 3530, 3540, 6370, 8736
EcoRV GATATC 3 cut(s) 3465, 5819, 5885
EcoT14I CCWWGG 3 cut(s) 2273, 2282, 6994
EcoT22I ATGCAT 6 cut(s) 2111, 2635, 3709, 3844, 5313, 9556
EcoT38I GRGCYC 3 cut(s) 59, 5533, 5626
ErhI CCWWGG 3 cut(s) 2273, 2282, 6994
Esp3I CGTCTC 2 cut(s) 3373, 4526
FauI CCCGC 1 cut(s) 8335
FauNDI CATATG 2 cut(s) 2635, 4079
FbaI TGATCA 2 cut(s) 1813, 3754
FblI GTMKAC 1 cut(s) 6746
FriOI GRGCYC 3 cut(s) 59, 5533, 5626
FspI TGCGCA 1 cut(s) 1856
GlaI GCGC 7 cut(s) 1856, 2326, 3581, 4483, 5344, 6689, 8513
GsaI CCCAGC 3 cut(s) 3492, 7263, 8092
HaeII RGCGCY 1 cut(s) 2328
HapII CCGG 8 cut(s) 483, 788, 1064, 1553, 2681, 4256, 4508, 7727
HgaI GACGC 3 cut(s) 2375, 5901, 7991
HhaI GCGC 7 cut(s) 1857, 2327, 3582, 4484, 5345, 6690, 8514
Hin1I GRCGYC 2 cut(s) 5912, 7983
Hin6I GCGC 7 cut(s) 1855, 2325, 3580, 4482, 5343, 6688, 8512
HinP1I GCGC 7 cut(s) 1855, 2325, 3580, 4482, 5343, 6688, 8512
HincII GTYRAC 8 cut(s) 361, 2215, 2836, 3604, 6747, 8010, 8188, 9417
HindII GTYRAC 8 cut(s) 361, 2215, 2836, 3604, 6747, 8010, 8188, 9417
HindIII AAGCTT 4 cut(s) 1169, 1820, 7994, 8649
HpaI GTTAAC 2 cut(s) 361, 9417
HpaII CCGG 8 cut(s) 483, 788, 1064, 1553, 2681, 4256, 4508, 7727
Hpy99I CGWCG 2 cut(s) 2391, 7725
Hsp92I GRCGYC 2 cut(s) 5912, 7983
HspAI GCGC 7 cut(s) 1855, 2325, 3580, 4482, 5343, 6688, 8512
Kpn2I TCCGGA 2 cut(s) 4255, 4507
KpnI GGTACC 1 cut(s) 4269
Ksp22I TGATCA 2 cut(s) 1813, 3754
KspAI GTTAAC 2 cut(s) 361, 9417
KspI CCGCGG 1 cut(s) 8827
LguI GCTCTTC 2 cut(s) 3256, 6001
MabI ACCWGGT 2 cut(s) 779, 7620
MbiI CCGCTC 1 cut(s) 7356
MfeI CAATTG 2 cut(s) 2871, 8244
MflI RGATCY 9 cut(s) 329, 1718, 1860, 3434, 4206, 5735, 6409, 7300, 8761
MlsI TGGCCA 4 cut(s) 3314, 5496, 6164, 8754
MluNI TGGCCA 4 cut(s) 3314, 5496, 6164, 8754
MmeI TCCRAC 8 cut(s) 906, 3083, 3238, 3889, 6274, 7065, 7685, 7840
Mox20I TGGCCA 4 cut(s) 3314, 5496, 6164, 8754
Mph1103I ATGCAT 6 cut(s) 2111, 2635, 3709, 3844, 5313, 9556
MroI TCCGGA 2 cut(s) 4255, 4507
MroXI GAANNNNTTC 8 cut(s) 210, 915, 3530, 3897, 4545, 6484, 8317, 8361
MscI TGGCCA 4 cut(s) 3314, 5496, 6164, 8754
MslI CAYNNNNRTG 9 cut(s) 408, 3803, 4302, 5502, 6128, 6786, 7345, 9621, 9640
Msp20I TGGCCA 4 cut(s) 3314, 5496, 6164, 8754
MspA1I CMGCKG 9 cut(s) 6302, 6419, 6934, 7115, 8260, 8786, 8826, 9437, 9514
MspCI CTTAAG 2 cut(s) 3353, 5452
MspI CCGG 8 cut(s) 483, 788, 1064, 1553, 2681, 4256, 4508, 7727
MunI CAATTG 2 cut(s) 2871, 8244
Mva1269I GAATGC 3 cut(s) 3965, 8806, 9129
MvnI CGCG 3 cut(s) 4482, 4484, 8826
NciI CCSGG 1 cut(s) 788
NcoI CCATGG 1 cut(s) 2282
NdeI CATATG 2 cut(s) 2635, 4079
NheI GCTAGC 2 cut(s) 5657, 5990
NmeAIII GCCGAG 2 cut(s) 3348, 9397
NmuCI GTSAC 8 cut(s) 1842, 2277, 3251, 4491, 5332, 5435, 8571, 8943
NsbI TGCGCA 1 cut(s) 1856
NsiI ATGCAT 6 cut(s) 2111, 2635, 3709, 3844, 5313, 9556
NspV TTCGAA 2 cut(s) 2752, 9121
OliI CACNNNNGTG 3 cut(s) 6786, 9621, 9640
PaeI GCATGC 7 cut(s) 1994, 3846, 5383, 5974, 7283, 8504, 9558
PaeR7I CTCGAG 1 cut(s) 5526
PagI TCATGA 3 cut(s) 919, 3229, 7321
PceI AGGCCT 1 cut(s) 9098
PciI ACATGT 4 cut(s) 1432, 3895, 5687, 6842
PciSI GCTCTTC 2 cut(s) 3256, 6001
PcsI WCGNNNNNNNCGW 1 cut(s) 3388
PctI GAATGC 3 cut(s) 3965, 8806, 9129
PdmI GAANNNNTTC 8 cut(s) 210, 915, 3530, 3897, 4545, 6484, 8317, 8361
PflMI CCANNNNNTGG 1 cut(s) 1190
PfoI TCCNGGA 4 cut(s) 786, 1725, 3876, 6112
PinAI ACCGGT 1 cut(s) 2680
Ple19I CGATCG 1 cut(s) 2341
Ppu21I YACGTR 1 cut(s) 6662
PpuMI RGGWCCY 6 cut(s) 2365, 2649, 4931, 8423, 9004, 9593
PscI ACATGT 4 cut(s) 1432, 3895, 5687, 6842
PshAI GACNNNNGTC 1 cut(s) 1179
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 2 cut(s) 5533, 5626
Psp5II RGGWCCY 6 cut(s) 2365, 2649, 4931, 8423, 9004, 9593
PspEI GGTNACC 1 cut(s) 2277
PspFI CCCAGC 3 cut(s) 3488, 7259, 8088
PspOMI GGGCCC 1 cut(s) 55
PspPPI RGGWCCY 6 cut(s) 2365, 2649, 4931, 8423, 9004, 9593
PspXI VCTCGAGB 1 cut(s) 5526
PsrI GAACNNNNNNTAC 2 cut(s) 5112, 5144
PstI CTGCAG 4 cut(s) 2397, 5553, 7870, 8794
PstNI CAGNNNCTG 4 cut(s) 233, 1600, 6431, 8789
PsuI RGATCY 9 cut(s) 329, 1718, 1860, 3434, 4206, 5735, 6409, 7300, 8761
PvuI CGATCG 1 cut(s) 2341
PvuII CAGCTG 5 cut(s) 6302, 6419, 8260, 8786, 9514
RseI CAYNNNNRTG 9 cut(s) 408, 3803, 4302, 5502, 6128, 6786, 7345, 9621, 9640
Rsr2I CGGWCCG 1 cut(s) 8821
RsrII CGGWCCG 1 cut(s) 8821
SacI GAGCTC 2 cut(s) 5533, 5626
SacII CCGCGG 1 cut(s) 8827
SalI GTCGAC 1 cut(s) 6745
SapI GCTCTTC 2 cut(s) 3256, 6001
SexAI ACCWGGT 2 cut(s) 779, 7620
Sfr274I CTCGAG 1 cut(s) 5526
Sfr303I CCGCGG 1 cut(s) 8827
SfuI TTCGAA 2 cut(s) 2752, 9121
SgrAI CRCCGGYG 1 cut(s) 2680
SgrBI CCGCGG 1 cut(s) 8827
SlaI CTCGAG 1 cut(s) 5526
SmiMI CAYNNNNRTG 9 cut(s) 408, 3803, 4302, 5502, 6128, 6786, 7345, 9621, 9640
SmlI CTYRAG 9 cut(s) 601, 1395, 3353, 3830, 5096, 5452, 5526, 5806, 7274
SmoI CTYRAG 9 cut(s) 601, 1395, 3353, 3830, 5096, 5452, 5526, 5806, 7274
SpeI ACTAGT 1 cut(s) 1079
SphI GCATGC 7 cut(s) 1994, 3846, 5383, 5974, 7283, 8504, 9558
SseBI AGGCCT 1 cut(s) 9098
SstI GAGCTC 2 cut(s) 5533, 5626
StuI AGGCCT 1 cut(s) 9098
StyI CCWWGG 3 cut(s) 2273, 2282, 6994
TaqII GACCGA 1 cut(s) 4231
TatI WGTACW 6 cut(s) 1114, 2479, 4667, 5827, 7679, 8617
TauI GCSGC 5 cut(s) 2501, 4400, 6388, 6937, 7988
TseFI GTSAC 8 cut(s) 1842, 2277, 3251, 4491, 5332, 5435, 8571, 8943
Tsp45I GTSAC 8 cut(s) 1842, 2277, 3251, 4491, 5332, 5435, 8571, 8943
TspGWI ACGGA 6 cut(s) 3239, 4511, 4550, 5425, 7481, 7841
Van91I CCANNNNNTGG 1 cut(s) 1190
Vha464I CTTAAG 2 cut(s) 3353, 5452
VneI GTGCAC 5 cut(s) 4305, 4681, 6663, 6779, 7020
XbaI TCTAGA 4 cut(s) 3118, 3869, 7009, 9010
XcmI CCANNNNNNNNNTGG 2 cut(s) 5132, 9135
XhoI CTCGAG 1 cut(s) 5526
XmaJI CCTAGG 1 cut(s) 6994
XmiI GTMKAC 1 cut(s) 6746
XmnI GAANNNNTTC 8 cut(s) 210, 915, 3530, 3897, 4545, 6484, 8317, 8361
Zsp2I ATGCAT 6 cut(s) 2111, 2635, 3709, 3844, 5313, 9556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.