MD15G1330600.v1.1

phagosome-lysosome fusion involved in apoptotic cell clearance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003216
Physical Location & Seq
Reverse (-)
36475296 .. 36500933
25638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1330600.v1.1.491

Sequence Viewer

Length: 9699 bp
ATGGATTTGTCATTGGTTGATAAAGAACCTGCGGCGGCTGCTGTTCTGCAGCTACAGAGATGGGGCCCTTCTCTTGCCCACCTAAACCTTTCCGAATTTCGCCAAGCTTTTATTTCTCCAACGAGACAGCTATTGTTACTGCTTTCTTACCACTCCGAAGCCTTGTTTATTCCTCTACTTAGCGGGGACTCTACAACTGGTAGTAGTAATCTGGAGACTGGCTCTGGTTTCTGCTCACAAACATTGACACCCCCTGGCAAGTCAGATTCAATAGGGGATGATTCAGTTCTAGATTTTGATAATGATTTCACCTTTGATAGGGAAATTGCAAGATCCGAAAACTACCCTTTTGTTGGTGATGTTAACTCTTTGGCTTGGGGTATCTGTGAGGATAATTATGATCAGAACAAGGATGCTTTATTTAGTGAAATTTTGTTTGTATCTGGCAAGCAAGGTCTGGTGGTACATGCTTTTGTTGAATCCACCCGAAACACTGATGTTGACAGGAATGCACTGCATGGTGAGTATGTCCAGGGGAGGTGGGTGGAATGGGGGCCTTCTGCCTCCTTAGTTGAAAATATGGTGGTGGAGGAAGCTACCAGCTTGAGTGTTAATGCCACTGGAAATATTGATTTAAACAGAGCCAATGGAGACAGTGAAAGTCCCCATAACAAATGTAATGTGCCTGGGAACGACAAGTTGCCAGAAGGCATTGCTTCTAAGAAATGGTTGCAATCTTTTCTGACAAAAGTTGAAACTGTTGAATACAATGGTAACATATTGACCAAGTTCCCAGAAAAGTCATTGTTTCCTTGCTCTGCAAAAGTCGTTTCATTTGGTTTGTTTAATAGTAATTTACCATTTCTGGACTTCCCTTCTAACAGTGATTCAGTGTCAAATGAGTGCACCCTGGAAACAGTTCACGAGTCAGAGAGTGATAACTCTATAAATACACATTTGACTTCATCTGGTCCGCATTTCAAATCTGAAATTTTGTCTAATATTTTTGGTTTTGGAATGAACTGTTTATACAAGTGCTCCAGAGTGTTTTCAAGCAATTCACATTGCTTTATTGGATTTGTTTTCACACAGGTTGATCCTGTAACTTTGAATACTAGTGATGAAAGTGAAAATACTAAGAAAAATAATGTACTTCTAGTTGCTAGATTAGATAGGCGGGGAATTCAGTGTGTTTCCTCAGTGAAGCTTGACGAGTGTCCAAATATTGGCTCAGTGGTACAATGGACAGACTTCCAGTTTTCTGATAGCCTTCTTATTTGTCTAAATGCATCCGGCTTAGTTGTTTTCTATGGAGTAATGTCCGGTGAGTATGTTGCACATTTAGGTATTTCACAGACTTTAGGACTCAACCCTCAGTTGGATTTTCATAAGCAAGGAGCATTGTCTCTAGGTTCTGAGCAACACAGTACTGAATTTGATGGAGTTGATTACAAAAGAGTTTTGCAACATGGTGATTCTTCTGATAGGAGAATGTTCAAAAGGTTGATTGCTGCTTCACATACCTCCCTAATAGCTGTTGTTGATGATTATGGTGTAATATATGTGATTTCAGCTGGTGACTATATACCGGGCATGTATTATGAAAATGAGAAATTACTTCCACATATTCAGCAGCAAGGGCTAGGCATGTTGGGTGGTTGGGAGGTTGGTGGTTGTGATATAGGTCACCAAAGGGTATATTCTAACATATCTGGTTCACAGAATTCTATTATTCAATCCATGACAAATGACAGATCTTCTTTCCTGGATGATTGTGGAAGTAATGTGCTTAGAAACCAAGAGTTGGACGGTAAGCGAGAAGGGAAGGGATCCAGCTCATTTTTGGGTAGATTTTCTGCTTCAAAATTAACAGATCAGAAGCCTTACTACTCTGAAAAGAAGCCACACTTGATGCGCAAGATCTTTCTTCCCCCACAAAAGTTTAGGGAATATGATCCCATCTGTTTCTCTCCATTAGGAATTACTCGGCTTGTTAAGAACAGGAATATGATGAACCCGAAGGGTTCTCACATTGTTCATCTCAATCTGCATGCTGAGTTCGTAGTTTGTGATGACAACTTTTTGAATACACGGTGTGAAATGTTTTATCTCCAAGGGAGGGAAGAAGCCTTTGTTGGAGAGGCAGTGGGCTGCACTTTCCAGGGATGTTTTTATTTGGTAACAGAAAGTGGTCTTTCAGTAGTGCTTCCTTCTGTATCAGTCTCATCAAATTTTCTTCCTCTTGAAGTTATTGGGTGCGGGCAGTTGACCAATTCAGGCACCGGAGATCAAGTTAAAAGCACAAGGGAAATGAAAGAATCTCAACAGCCTTGGTCACCCTGGAATGTTGAAATTTTGGACAGAGTCCATCTCTATGAAAGTGCTGAAGAGGCAGATCGCTTGTGTTTGGAAAACGGATGGAACCTGAAAATATCTCGGATGCATCGACTTCAGTTGGCATTGGACTACTTGAAATTTGATGAGATAGAACGATCATTAGAAATGCTTGTTGGTGTCAATTTGGCAGAAGAAGGAGTATTAAGGTTACTCTTTGGTGCTGTGTATCTGATGCTTCATAAAGTTGGCAATGATAATGAGGTTTCTGCTGCATCAAGGCTTCTTGCGTTGGCAACTTGCTTTGCAACCAAAATGATTCGTAAGTATTGGTTGGTTGAACATAAGAAAGATGCATATGAATATGATAGGACCCAGATGCTTTCACTTCTGCCAGTTTTACCAGAAAAGGTACAAGATGAAGTGGAAAATTCAAGAAGACTTCGTGAGATGGCTCAATTTTTGGAGATAATACGAAACCTGCAATCTCGACTTGGTTCAAAATATAAGAGACCGGACAGAGAATTGGTGGACAGTGGGGAAACATCGGCACTACTAGACAATGATTTATCACAGGATGAATCTCAGTTGATAGTTGTTTCTGTAGACCCCGTATCTTTGGAGACATCAGAACAACAAGACTTTCCTGTATCTACATCTGCCTTTAACTATTCTGAGAATCTTGCATTGACACCTGTGGATCCTGCAGTGCATTTGGACCCGGAGGATTTGAGTGAAGTATCTCTTGTGCCACGAGGGGGGTTCTTAGAGAAGAAAATTCTTCCCTTGGAAAACCCCAAAGAGATGATAGCACGCTGGAAAATAGATAATTTAGACCTCAAGGCAGTAGTCAATGATGCTTTACTCACTGGTCGTCTCCCCTTAGCAGTTCTTCAACTCCATCTTCATCGTTCAAGAGATTCAGTTCCTGGAAAAGAGCCTCATGATACTTTCACTGAAGTCCGTGATATTGGAAGAGCTATTGCTTATGACCTCTTTTTGAAGGGTGAATCTGGACTTGCTGTGGCCACATTGCAAAGGCTTGGAGAGGATGTAGAAGCTAGCCTCAAGCAGTTATTATTTGGCACAGTTAGAAGATATTTACGAGTGCAAATCACTGAAGAGATGAATAGATATGGCTACTTGGGCCCATATGAGTGGAAGATATTGGATAGGATATCCCTCATTGAGAGACTTTACCCTAGCAGTAGTTTCTGGAAAACACTTCACGGACGGCAGAAAGAATTCATTAGAATTCCAGCAAGTTCAAGTTTGCCTAAGAGATATTATTTGCGCCTGTTGCATTCACATGCATTCAACAATTCTACCATTGAGTGCGATGACATTGATGGAGTTGTTTTTGGTTCATGGGCAAATGTCAATGAAAATCCTTATGTTCGTATGGTTGATGAAGATAGTGCTTATGCTGGATACTGGGCTTGTGCGGCTGTATGGTTTAGTTTCTATGACCAAAGAACCATTGAACGGATAGTCTTGGATCAGCCATCTTTTATGGGTGTGCATGTGTTGTGGGAATCACAGCTTGAGTACCATGTATGCCACAGCGACTGGGAGCAAGTCTCTAGACTCCTGGACCTTATTCCACCACAATTTTTAGCAGTTGGAAGCCTCCAAGTCAGCTTGGATGGGTTACAGCCTGTTTCAAATGTTGGATGCAGTAGGCGATCTGATTATGGTGCTTACCTGTGCTCTATTGAAGAATTGGATGCTGTCTGCATGGATGTTCCAGAAATCAAAGTTTTCAGGTTTTCATGTAATAACATGTGCTCCATATGGTTAAGGATGCTGATGCAAGAGAAACTTGCGAGAAACTTTATTTTCTTAAAGGAATATTGGGAAGGCACTGCTGATATATTACTTCTGCTTGCCCGTTCTGGCTTCATTACTAGCAAGTGTGAAGTGCCTTCCAAGGATGATAAGATTGAGAGTTTATCAGTCCCTCAATTTCCACATGAATGTGGAAAATTTCATGTCGGGACCTTGCAAGCCTTGCATAAGCTACTCATACATCATTGTGCGCAGTATAACTTGCCATACCTTCTGGACCTTTACCTGGACCAGCATGAGTTGTTACAAGATAATAATTCACTTGCATCATTACAGGAAGCTGCGGGAGATTGTGAATGGGCAAGATGGTTGCTCCTCTCTAGGGTAAAGGGGTGCGAGTATGAAGCATCATTTTCTAATGCTCGCACGATCATGTCACACAATCTAGTTCCTGGTAGTAACCTAAGCGTTCCAGAGATGGATGAAATAATTCGTACCGTTGATGACATTTCTGAAGGAGGGGCAGAATTGGCAGCTGTGGCAACCTTAATGTATGCTTCTGTCCCAGTTCAAAGTTGTCTGAGTAGTGGTAGTGTAACGAGGCATAGCAGCACATCAGCCCAGTGCACACTAGAGAATCTTAGGCCTACTCTTCAGCGTTTCCCTACATTGTGGCAATCATTTGTATCAGCATGTTTTGGGCATGATCCCATTTCCAGTTTTTGGGGGCCTAAGGCAAATAATGATTATATAAATTGGCGCTGCAAAATATTTTTCTCTTCTGGATGTGATACATCACTTCGACAAATGCTGCCATGCTGGTTTCCTAAGCCTCTACGGAGACTGATTCAGCTTTATGTGCAGGGTCCTCTTGGATGGCAAACAGTGTCAGGTCTGCCAATAGGAGAAGGTTTGTTACACAGAGATGCAGAATTTTTCATAAATGCTGATGAGGATACTGAGTTCGGCGCAATCTCCTTGGAAGCTACCATCCAAAAACACATTCAGGAGGAACTCTATAATTCTGCGCTTGGGGAAAATTCACTTGGCTTGGAGCACCATTTACATCGTGGACGTGCACTAGCAGCTTTTAATCATTTACTTACTGCGAGAGTTCAAAAACTGAAGTCAGAAAGGCAAGCGCATGGACAAACAAATGTTCAAGCAGATGTTCAAACACTTCTTGGACCTATAAAAGAAAGTGAAAAGTCTCTTCTTGCATCTGTCATGCCAATTGCAATTATGCATTTTGAGGATTCTGTGTTGGTGGCATCATGTGCTCTCCTCCTGGAGGTTTGTGGCTTTTCTGCCAGCATGCTCCGCATAGACATTGCAGCCTTGAGACGGATTTCTTCTTTTTACAAATCGAATGAAAATATTGAGAGCTTACGGCAACTTCCAACCAAGAGTTCTGAATTTCATGCAGTTAGCCATGAAAGTGATATAACAGTATCTATTGCTCAAGCTCTCGCAGATGAATATCTGCACCAGGATATTTCAAGCAATGGTAAGCAAAAGGGTACTCCAAATGTAGCTGCTAGTAGACAACCTTCACGAGCTCTCATGCTTGTTTTACATCACTTGGAAAAAGCTAGCCTTCCTCAAACGGTGGATGTAAAGACATGTGGTTCTTGGCTTTTGAGTGGCAATGGTGATGGAATGGAGTTAAGATCTCAGCAGAAAGCTGCAAGCCATCATTGGAATTTAGTTACAGTTTTTTGTCAGATGCATCACCTTCCTTTGAGTACAAAATACCTTTCTGTATTGGCAAGAGACAACGATTGGGTCGGATTTTTGTCGGAAGCTCAGATTGGAGGATATCCTTTTAATACGGTGGTCCAAATGGCATCAAAGGAGTTTAGTGATCCACGTCTCAAAATTCATATTTCAACAGTTTTGAAAGGCATGCAGTTAAGAAGAAAAGCTAGCTCCTCCTCGTATTTAGATACTACAGAAAAGAATAGCGAAGTGTCCTTTCCAGAAGAAAACATTTGTGTCCCGGTCGAACTCTTTAGAATATTAGCAGAATGTGAAAAGCAGAAATTTCCTGGAGAGGCCATTTTGATGAAAGCGAAGGAGTTGTCCTGGTCAATTTTGGCAATGATTGCCTCTTGCTTTTCAGATGTGTCTCCAATATCTTGCCTAACAGTCTGGCTGGAAATTACTGCTGCAAGGGAAACTTCTTCTATTAAGGTGAATGATATTGCTTCCAGAATTGCAAGAAATGTTGGAGCAGCCGTGGAAGCTACTAATTCCCTTCCAGCAGGAAGTAAAGGCATGTGTTTTCATTACAATAGGAAAAATTCAAAACGAAGGCGGCTTTTGGAGCCCATCTCAAGAGATCCCTCAGATGCTTCAATTTCTAATATTTCAAATTCTCTTCCACGTGCAAATATATTTGATTCCCCGGGCCTTATTTCTAAAGGGGAAAGAAAGATAGAACTTGGGGAAAGTATGAATGTTTCCAGTGATTCTGAGGAAGGGCCTGCTTTGCTGTCCAAGATGGTTGCAGTGCTTTGTGAGCAACACTTGTTCCTGCCTTTGTTAAGGGCATTTGAAATGTTCCTTCCGTCATGTTCTCTCTTACCTTTCATACGTGCTCTCCAGGCATTTTCACAAATGCGCCTATCTGAAGCCTCAGCGCATTTGGGTTCATTTTCTGCCCGAATTAAAGAAGAATCAACACGCCTGCCAGTAAATGTTGGACGAGAAGCGCAGATTGGTACATCATGGATCAGCTTCACCTCCATTAAAGCTGCAGATTCAATGCTTTTGACATGTCCATCTCCTTACGAGAAAAGATGTTTACTGCAACTGCTTGCTTCAACTGATTTTGGAGATGGAGGGTCCGCAGCAACATACTACCGACGTCTTTATTGGAAAATTAATTTAGCAGAGCCATTATTACGCAAGGATGACATTTTACATCTTGGGAGCGAGACTTTAGATGATGTTTCCCTTGCAACGGGACTGGAGAATAACAGGCACTGGGAGCAGGCACGGAACTGGGCCAGACAGTTGGAGGCCAGTGGTGCACCTTGGAAATCTGCTGTTCATCGTGTAACTGAAAATCAGGCTGAATCAATGGTAGCTGAATGGAAGGAGTTTCTTTGGGATGTTCCAGAGGAGAGAATTGCATTATGGGGCCATTGCCAAACGTTGTTCATCAGATACTCTTTCCCAGCTTTACAGGCTGGGTTATTTTTCCTGAAACATGCAGAAGCTTTGGAAAAAGATCTTCCAGCTAGAGAGCTTCATGAGCTGTTGCTGCTTTCTCTACAATGGTTAAGCGGGATGATAACCCTGTCCAGTCCAGCTTATCCACTTCATCTTATTCGAGAAATCGAGACTAAAGTGTGGCTCTTGGCAGTAGAATCAGAAGCACACATTAAGGATGAAGGAGACTTCAATTTAAGCAGTTCCAGCCGTGACCCGATTATGAAAAATAGCTCCAGTATTATTGACCGGACTGCATGTCTAATAACAAAAATGGACAATCATGTTGGTACATTTAAGAATAGAACGGTTGAGAAACATGATCCAAGAGAAAATAACCAGGCACATAACAAGAACTATGTATTAGATACTAGCTTTCCAATGACCACAGGGGGGAGTACAAAGACAAAGCGGAGGACAAAGGGGTACGGGCTGTTAAGACGGCCACCACTTGATGCGGTAGAGAAGCACACTGATCTTCATGATGGTTCCAACCCTCCCAACGTTAGAAGTGATTTACAATCTCAGGACGAAAACATAAAAATGGAAATGTCATTTTCACGATGGGAGGAAGGGGTAGGACCAGCAGAGCCGGAAAGTGCTGTTCTTTCCTTATTGGAATTTGGACAAATAGCAGCTGCAAAGCAACTCCAGCATAAGCTATCTCCAGATAAAATCCCATATGAATTTGTAGTTGTGGATGCTGCATTGAAACTTGCAGGAATGTCTTCAAGTAAGAAAGTATCCTTATCAATGCTAGATGAGGAGGTGCGTTCTGTTATGCAATCGTACAACATACTGAATGAACAGCATCAAGTTGACCCACTGCAGGTTTTGGAGAGTCTTGCAACCAATCTTTCTGAAGGTTGTGGGCGTGGAATATGTAAGAAGATAATAGCAGTCGCCAAAGCCGCAACCATCTTAGGCATTTCATTTTCCGAGGCATTTGATAAGCAGCCAATTGAATTACTACAGCTGCTTTCCCTTAAAGCACAGGAGTCATTTGAGGAGGCGCATCTCCTTGTAAGAACTCATTCAATGCCAGCGGCCAGTATTGCTCAAATTCTTGCAGAATCCTTTCTAAAGGGCTTATTGGCTGCTCATCGTGGAGGGTATATGGATTCTCAAAAGGAAGAAGGACCTGCTCCTTTATTGTGGAGATTTTCAGACTTCTTGAAGTGGGCAGAGCTTTGCTCTTCTGAGCAAGAAATTGGACATGCATTGATGCGTTTGGTTATTACCGGACAAGAAGTACCACATGCCTGTGAGGTTGAGCTTCTAATTTTGTCCCACCACTTCTACAAATTATCATCTTGCCTTGATGGAGTTGATGTTCTTGTAGCCCTCGCAGCTACTAGGGTAGAAGCGTATGTATCTGAGGGTGATTTTTCATGTTTGGCCCGTCTCATAACTGGAGTAGGAAACTTCCATGCCCTCAATTTCATTCTTGGAATTCTGATAGAAAATGGTCAACTGGATCTCCTTCTTCAGAAGTATTCTGCTGCGGCAGATGCAAGTGCTGGCACTGCTGAGGCTGTTAGAGGGTTTCGAATGGCTGTTCTCACATCACTCAAGCATTTCAATCCAAATGACCTTGATGCCTTTGCTATGGTCTACAATCATTTTGACATGAAACATGAAACGGCTGCTCTCTTAGAGTCACGAGCGGAGCAGTCATCTGAGCAGTGGTTTGGCCGTTATGACAAGGATCAGAATGAAGATCTTTTAGACTCTATGCGGTATTACATTGAAGCTGCTGAAGTTCACAAATCCATCGATGCTGGCAACAAAACACGCGCTGCATGCGCTCAGGCTTCCCTTGTGTCCCTTCAAATTCGAATGCCTGACTTCCAGTGGCTGTACCGTTCGGAAACCAATGCCAGGCGGGCCCTTGTTGAACAGTCTCGTTTTCAAGAAGCCCTCATTGTTGCTGAAGCCTATGGCCTTAATCAGCCAAGCGAGTGGGCTTTGGTACTTTGGAACCAGATGCTGAAACCAGAAGTAATGGAAGAGTTTGTGGCTGAATTTGTGGCCGTGCTTCCTCTCCAGCCTTCGATGCTTGCTGATCTAGCAAGATTTTATAGGGCAGAGGTGGCAGCGAGAGGGGACCAATCCCAACTCTCGGTTTGGCTAACGGGGGGAGGGTTGCCAGCTGACTGGGCCAAGTATCTGGGGAGGTCGTTTAGATGCTTGTTGAGAAGGACGAGAGATTTGAAGCTGCGGTTACAACTGGCTACTGTCGCTACTGGCTTTGGGGATGTCATTGATGCATGCATGAACGCATTAGATAGGGTTCCGGACAATGTTGGACCACTTGTACTCAGGAAAGGTCATGGTGGTGCCTATCTCCCGCTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spatacsin_C

Protein Analysis

3233

Amino Acids

361.18

Weight (kDa)

5.55

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spatacsin_C PF14649 2850 - 3141 5.5e-73 Spatacsin C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 6994
Acc16I TGCGCA 2 cut(s) 1916, 4374
Acc36I ACCTGC 4 cut(s) 37, 2823, 8158, 8488
AccB1I GGYRCC 2 cut(s) 2279, 9677
AccB7I CCANNNNNTGG 3 cut(s) 1226, 1804, 4845
AccBSI CCGCTC 1 cut(s) 9005
AccI GTMKAC 3 cut(s) 2940, 5665, 8952
AccII CGCG 1 cut(s) 9135
AccIII TCCGGA 1 cut(s) 9634
AclI AACGTT 2 cut(s) 7280, 7842
AcoI YGGCCR 5 cut(s) 3360, 7781, 8385, 9031, 9369
AcvI CACGTG 1 cut(s) 6509
AcyI GRCGYC 1 cut(s) 6991
AdeI CACNNNGTG 1 cut(s) 2096
AflIII ACRYGT 3 cut(s) 4116, 5744, 6899
AhdI GACNNNNNGTC 1 cut(s) 7596
AhlI ACTAGT 1 cut(s) 1115
AjiI CACGTC 2 cut(s) 5198, 5993
AloI GAACNNNNNNTCC 4 cut(s) 5069, 5101, 8655, 8687
Alw44I GTGCAC 4 cut(s) 904, 4747, 5199, 7155
AlwNI CAGNNNCTG 5 cut(s) 3263, 3903, 7110, 9196, 9328
Ama87I CYCGRG 1 cut(s) 6529
Aor13HI TCCGGA 1 cut(s) 9634
ApaI GGGCCC 3 cut(s) 68, 3485, 9229
ApaLI GTGCAC 4 cut(s) 904, 4747, 5199, 7155
ArsI GACNNNNNNTTYG 4 cut(s) 6188, 6220, 9532, 9564
AseI ATTAAT 1 cut(s) 7008
Asp700I GAANNNNTTC 6 cut(s) 918, 3578, 4611, 8065, 8371, 8415
AsuC2I CCSGG 5 cut(s) 1590, 3056, 6122, 6530, 6531
AsuII TTCGAA 2 cut(s) 8887, 9175
AsuNHI GCTAGC 3 cut(s) 3395, 5714, 6047
AvaI CYCGRG 1 cut(s) 6529
AxyI CCTNAGG 1 cut(s) 4854
BaeGI GKGCMC 7 cut(s) 68, 908, 3485, 4751, 5203, 7159, 9229
BalI TGGCCA 1 cut(s) 3362
BamHI GGATCC 2 cut(s) 1829, 3034
BanI GGYRCC 2 cut(s) 2279, 9677
BanII GRGCYC 5 cut(s) 68, 3485, 5683, 6453, 9229
BarI GAAGNNNNNNTAC 6 cut(s) 1871, 1903, 5022, 5054, 5656, 5688
BauI CACGAG 4 cut(s) 923, 3087, 5676, 9000
BbrPI CACGTG 1 cut(s) 6509
BbsI GAAGAC 2 cut(s) 2779, 8058
BbvCI CCTCAGC 2 cut(s) 6760, 8868
BceAI ACGGC 8 cut(s) 3584, 5528, 6344, 7533, 7796, 8997, 9018, 9356
BciVI GTATCC 3 cut(s) 3758, 5071, 8092
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 5 cut(s) 1590, 3056, 6122, 6530, 6531
BcuI ACTAGT 1 cut(s) 1115
BfmI CTRYAG 8 cut(s) 47, 53, 2937, 3039, 6072, 6879, 8165, 8309
BfoI RGCGCY 1 cut(s) 4885
BfuAI ACCTGC 4 cut(s) 37, 2823, 8158, 8488
BfuI GTATCC 3 cut(s) 3758, 5071, 8092
BglI GCCNNNNNGGC 1 cut(s) 9224
BglII AGATCT 5 cut(s) 1754, 1920, 5792, 7357, 9058
BmcAI AGTACT 1 cut(s) 1429
BmeRI GACNNNNNGTC 1 cut(s) 7596
BmeT110I CYCGRG 1 cut(s) 6529
BmgBI CACGTC 2 cut(s) 5198, 5993
BmrI ACTGGG 7 cut(s) 3778, 3913, 4682, 4738, 7120, 7138, 9505
BmtI GCTAGC 3 cut(s) 3399, 5718, 6051
BmuI ACTGGG 7 cut(s) 3778, 3913, 4682, 4738, 7120, 7138, 9505
BoxI GACNNNNGTC 1 cut(s) 1215
BpiI GAAGAC 2 cut(s) 2779, 8058
Bpu10I CCTNAGC 6 cut(s) 3217, 4586, 4950, 6760, 8868, 9147
Bpu14I TTCGAA 2 cut(s) 8887, 9175
BpuEI CTTGAG 8 cut(s) 625, 3158, 3386, 3899, 5482, 5568, 6442, 8894
BpuMI CCSGG 5 cut(s) 1590, 3056, 6122, 6530, 6531
Bsa29I ATCGAT 1 cut(s) 9114
BsaAI YACGTR 2 cut(s) 6509, 6719
BsaBI GATNNNNATC 1 cut(s) 5601
BsaHI GRCGYC 1 cut(s) 6991
BsaI GGTCTC 1 cut(s) 2839
BsaWI WCCGGW 6 cut(s) 1322, 2282, 2848, 7587, 8579, 9634
Bse21I CCTNAGG 1 cut(s) 4854
Bse3DI GCAATG 9 cut(s) 711, 1063, 2593, 3365, 5451, 5632, 5776, 6228, 7270
Bse8I GATNNNNATC 1 cut(s) 5601
BseAI TCCGGA 1 cut(s) 9634
BseCI ATCGAT 1 cut(s) 9114
BseJI GATNNNNATC 1 cut(s) 5601
BseMI GCAATG 9 cut(s) 711, 1063, 2593, 3365, 5451, 5632, 5776, 6228, 7270
BseRI GAGGAG 7 cut(s) 4487, 5396, 6043, 6046, 7262, 8117, 8360
BseSI GKGCMC 7 cut(s) 68, 908, 3485, 4751, 5203, 7159, 9229
BseYI CCCAGC 2 cut(s) 7303, 7316
BsgI GTGCAG 3 cut(s) 2137, 5003, 5591
Bsh1236I CGCG 1 cut(s) 9135
Bsh1285I CGRYCG 1 cut(s) 6126
BshNI GGYRCC 2 cut(s) 2279, 9677
BshVI ATCGAT 1 cut(s) 9114
BsiEI CGRYCG 1 cut(s) 6126
BsiHKCI CYCGRG 1 cut(s) 6529
BsmBI CGTCTC 4 cut(s) 3215, 5458, 5999, 8747
BsmI GAATGC 4 cut(s) 514, 3637, 3647, 9183
Bso31I GGTCTC 1 cut(s) 2839
BsoBI CYCGRG 1 cut(s) 6529
Bsp119I TTCGAA 2 cut(s) 8887, 9175
Bsp120I GGGCCC 3 cut(s) 64, 3481, 9225
Bsp13I TCCGGA 1 cut(s) 9634
BspDI ATCGAT 1 cut(s) 9114
BspEI TCCGGA 1 cut(s) 9634
BspFNI CGCG 1 cut(s) 9135
BspHI TCATGA 3 cut(s) 3277, 7378, 7819
BspMAI CTGCAG 4 cut(s) 51, 3043, 6883, 8169
BspMI ACCTGC 4 cut(s) 37, 2823, 8158, 8488
BspOI GCTAGC 3 cut(s) 3399, 5718, 6051
BspQI GCTCTTC 2 cut(s) 3304, 8539
BspT104I TTCGAA 2 cut(s) 8887, 9175
BspT107I GGYRCC 2 cut(s) 2279, 9677
BspTNI GGTCTC 1 cut(s) 2839
BsrBI CCGCTC 1 cut(s) 9005
BsrDI GCAATG 9 cut(s) 711, 1063, 2593, 3365, 5451, 5632, 5776, 6228, 7270
BssNI GRCGYC 1 cut(s) 6991
BssSI CACGAG 4 cut(s) 923, 3087, 5676, 9000
BssT1I CCWWGG 6 cut(s) 2113, 2330, 3120, 4263, 5100, 7160
Bst2BI CACGAG 4 cut(s) 923, 3087, 5676, 9000
Bst6I CTCTTC 9 cut(s) 2382, 3304, 3450, 4779, 4906, 5340, 6507, 8539, 9342
BstACI GRCGYC 1 cut(s) 6991
BstAPI GCANNNNNTGC 3 cut(s) 4345, 5399, 6227
BstBAI YACGTR 2 cut(s) 6509, 6719
BstBI TTCGAA 2 cut(s) 8887, 9175
BstDSI CCRYGG 1 cut(s) 6360
BstEII GGTNACC 2 cut(s) 1685, 2334
BstENI CCTNNNNNAGG 2 cut(s) 316, 5411
BstFNI CGCG 1 cut(s) 9135
BstH2I RGCGCY 1 cut(s) 4885
BstMCI CGRYCG 1 cut(s) 6126
BstPAI GACNNNNGTC 1 cut(s) 1215
BstPI GGTNACC 2 cut(s) 1685, 2334
BstSFI CTRYAG 8 cut(s) 47, 53, 2937, 3039, 6072, 6879, 8165, 8309
BstSLI GKGCMC 7 cut(s) 68, 908, 3485, 4751, 5203, 7159, 9229
BstUI CGCG 1 cut(s) 9135
BstV2I GAAGAC 2 cut(s) 2779, 8058
BstXI CCANNNNNNTGG 5 cut(s) 3492, 7141, 9300, 9495, 9508
Bsu15I ATCGAT 1 cut(s) 9114
Bsu36I CCTNAGG 1 cut(s) 4854
BsuI GTATCC 3 cut(s) 3758, 5071, 8092
BsuTUI ATCGAT 1 cut(s) 9114
BtgI CCRYGG 1 cut(s) 6360
BtgZI GCGATG 1 cut(s) 3687
BtrI CACGTC 2 cut(s) 5198, 5993
BtsI GCAGTG 8 cut(s) 512, 2151, 3048, 4197, 6639, 8162, 8862, 9029
BveI ACCTGC 4 cut(s) 37, 2823, 8158, 8488
CaiI CAGNNNCTG 5 cut(s) 3263, 3903, 7110, 9196, 9328
CciI TCATGA 3 cut(s) 3277, 7378, 7819
Cfr9I CCCGGG 1 cut(s) 6529
ClaI ATCGAT 1 cut(s) 9114
DraI TTTAAA 1 cut(s) 636
DraIII CACNNNGTG 1 cut(s) 2096
DriI GACNNNNNGTC 1 cut(s) 7596
EaeI YGGCCR 5 cut(s) 3360, 7781, 8385, 9031, 9369
Eam1104I CTCTTC 9 cut(s) 2382, 3304, 3450, 4779, 4906, 5340, 6507, 8539, 9342
Eam1105I GACNNNNNGTC 1 cut(s) 7596
EarI CTCTTC 9 cut(s) 2382, 3304, 3450, 4779, 4906, 5340, 6507, 8539, 9342
Ecl136II GAGCTC 1 cut(s) 5681
Eco130I CCWWGG 6 cut(s) 2113, 2330, 3120, 4263, 5100, 7160
Eco147I AGGCCT 1 cut(s) 4768
Eco24I GRGCYC 5 cut(s) 68, 3485, 5683, 6453, 9229
Eco31I GGTCTC 1 cut(s) 2839
Eco32I GATATC 2 cut(s) 3513, 5942
Eco53kI GAGCTC 1 cut(s) 5681
Eco72I CACGTG 1 cut(s) 6509
Eco81I CCTNAGG 1 cut(s) 4854
Eco88I CYCGRG 1 cut(s) 6529
Eco91I GGTNACC 2 cut(s) 1685, 2334
EcoICRI GAGCTC 1 cut(s) 5681
EcoNI CCTNNNNNAGG 2 cut(s) 316, 5411
EcoO65I GGTNACC 2 cut(s) 1685, 2334
EcoRI GAATTC 5 cut(s) 1182, 1723, 3578, 3588, 8790
EcoRV GATATC 2 cut(s) 3513, 5942
EcoT14I CCWWGG 6 cut(s) 2113, 2330, 3120, 4263, 5100, 7160
EcoT22I ATGCAT 9 cut(s) 1291, 2445, 2692, 3649, 5370, 5853, 8560, 9610, 9614
EcoT38I GRGCYC 5 cut(s) 68, 3485, 5683, 6453, 9229
ErhI CCWWGG 6 cut(s) 2113, 2330, 3120, 4263, 5100, 7160
Esp3I CGTCTC 4 cut(s) 3215, 5458, 5999, 8747
FauI CCCGC 7 cut(s) 176, 1170, 2252, 4459, 7406, 9216, 9696
FauNDI CATATG 4 cut(s) 2692, 3487, 4127, 8020
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 3 cut(s) 2940, 5665, 8952
FriOI GRGCYC 5 cut(s) 68, 3485, 5683, 6453, 9229
FspI TGCGCA 2 cut(s) 1916, 4374
GsaI CCCAGC 2 cut(s) 7307, 7320
HaeII RGCGCY 1 cut(s) 4885
Hin1I GRCGYC 1 cut(s) 6991
HincII GTYRAC 5 cut(s) 364, 502, 2268, 8158, 8810
HindII GTYRAC 5 cut(s) 364, 502, 2268, 8158, 8810
HindIII AAGCTT 3 cut(s) 105, 1205, 7344
HpaI GTTAAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 6993
HpyCH4IV ACGT 7 cut(s) 5197, 5992, 6508, 6718, 6991, 7280, 7842
HpySE526I ACGT 7 cut(s) 5197, 5992, 6508, 6718, 6991, 7280, 7842
Hsp92I GRCGYC 1 cut(s) 6991
Kpn2I TCCGGA 1 cut(s) 9634
Ksp22I TGATCA 1 cut(s) 400
KspAI GTTAAC 1 cut(s) 364
LguI GCTCTTC 2 cut(s) 3304, 8539
MaeII ACGT 7 cut(s) 5197, 5992, 6508, 6718, 6991, 7280, 7842
MbiI CCGCTC 1 cut(s) 9005
MfeI CAATTG 2 cut(s) 5355, 8298
MlsI TGGCCA 1 cut(s) 3362
MluNI TGGCCA 1 cut(s) 3362
MlyI GAGTC 9 cut(s) 182, 935, 1359, 2373, 3915, 8188, 8345, 9005, 9062
Mox20I TGGCCA 1 cut(s) 3362
Mph1103I ATGCAT 9 cut(s) 1291, 2445, 2692, 3649, 5370, 5853, 8560, 9610, 9614
MroI TCCGGA 1 cut(s) 9634
MroXI GAANNNNTTC 6 cut(s) 918, 3578, 4611, 8065, 8371, 8415
MscI TGGCCA 1 cut(s) 3362
Msp20I TGGCCA 1 cut(s) 3362
MspA1I CMGCKG 6 cut(s) 1574, 4658, 7976, 8314, 8384, 9491
MunI CAATTG 2 cut(s) 5355, 8298
Mva1269I GAATGC 4 cut(s) 514, 3637, 3647, 9183
MvnI CGCG 1 cut(s) 9135
NciI CCSGG 5 cut(s) 1590, 3056, 6122, 6530, 6531
NdeI CATATG 4 cut(s) 2692, 3487, 4127, 8020
NheI GCTAGC 3 cut(s) 3395, 5714, 6047
NmeAIII GCCGAG 1 cut(s) 1966
NmuCI GTSAC 6 cut(s) 1577, 1685, 2334, 4557, 7550, 8997
NsbI TGCGCA 2 cut(s) 1916, 4374
NsiI ATGCAT 9 cut(s) 1291, 2445, 2692, 3649, 5370, 5853, 8560, 9610, 9614
NspV TTCGAA 2 cut(s) 8887, 9175
PaeI GCATGC 5 cut(s) 2054, 5440, 6031, 9144, 9612
PagI TCATGA 3 cut(s) 3277, 7378, 7819
PceI AGGCCT 1 cut(s) 4768
PciI ACATGT 3 cut(s) 4116, 5744, 6899
PciSI GCTCTTC 2 cut(s) 3304, 8539
PcsI WCGNNNNNNNCGW 1 cut(s) 2443
PctI GAATGC 4 cut(s) 514, 3637, 3647, 9183
PdmI GAANNNNTTC 6 cut(s) 918, 3578, 4611, 8065, 8371, 8415
PflFI GACNNNGTC 1 cut(s) 2363
PflMI CCANNNNNTGG 3 cut(s) 1226, 1804, 4845
PfoI TCCNGGA 5 cut(s) 1764, 3262, 3924, 5409, 6169
PleI GAGTC 9 cut(s) 182, 934, 1359, 2372, 3915, 8187, 8344, 9004, 9062
PmaCI CACGTG 1 cut(s) 6509
PmlI CACGTG 1 cut(s) 6509
PpsI GAGTC 9 cut(s) 182, 934, 1359, 2372, 3915, 8187, 8344, 9004, 9062
Ppu21I YACGTR 2 cut(s) 6509, 6719
PpuMI RGGWCCY 4 cut(s) 2706, 4332, 4988, 8477
PscI ACATGT 3 cut(s) 4116, 5744, 6899
PshAI GACNNNNGTC 1 cut(s) 1215
PshBI ATTAAT 1 cut(s) 7008
Psp124BI GAGCTC 1 cut(s) 5683
Psp1406I AACGTT 2 cut(s) 7280, 7842
Psp5II RGGWCCY 4 cut(s) 2706, 4332, 4988, 8477
PspCI CACGTG 1 cut(s) 6509
PspEI GGTNACC 2 cut(s) 1685, 2334
PspFI CCCAGC 2 cut(s) 7303, 7316
PspOMI GGGCCC 3 cut(s) 64, 3481, 9225
PspPPI RGGWCCY 4 cut(s) 2706, 4332, 4988, 8477
PsrI GAACNNNNNNTAC 2 cut(s) 1013, 1045
PstI CTGCAG 4 cut(s) 51, 3043, 6883, 8169
PstNI CAGNNNCTG 5 cut(s) 3263, 3903, 7110, 9196, 9328
PsyI GACNNNGTC 1 cut(s) 2363
PvuII CAGCTG 5 cut(s) 1574, 4658, 7976, 8314, 9491
SacI GAGCTC 1 cut(s) 5683
SapI GCTCTTC 2 cut(s) 3304, 8539
ScaI AGTACT 1 cut(s) 1429
SchI GAGTC 9 cut(s) 182, 935, 1359, 2373, 3915, 8188, 8345, 9005, 9062
SfcI CTRYAG 8 cut(s) 47, 53, 2937, 3039, 6072, 6879, 8165, 8309
SfuI TTCGAA 2 cut(s) 8887, 9175
SmaI CCCGGG 1 cut(s) 6531
SmlI CTYRAG 8 cut(s) 604, 3173, 3401, 3878, 5461, 5583, 6457, 8909
SmoI CTYRAG 8 cut(s) 604, 3173, 3401, 3878, 5461, 5583, 6457, 8909
SpeI ACTAGT 1 cut(s) 1115
SphI GCATGC 5 cut(s) 2054, 5440, 6031, 9144, 9612
SseBI AGGCCT 1 cut(s) 4768
SspI AATATT 8 cut(s) 628, 1003, 1225, 4187, 4893, 5500, 6141, 6490
SstI GAGCTC 1 cut(s) 5683
StuI AGGCCT 1 cut(s) 4768
StyI CCWWGG 6 cut(s) 2113, 2330, 3120, 4263, 5100, 7160
TaiI ACGT 7 cut(s) 5200, 5995, 6511, 6721, 6994, 7283, 7845
TatI WGTACW 5 cut(s) 1150, 1427, 5867, 7736, 9655
TauI GCSGC 7 cut(s) 35, 38, 3782, 6442, 8252, 8387, 8846
TseFI GTSAC 6 cut(s) 1577, 1685, 2334, 4557, 7550, 8997
Tsp45I GTSAC 6 cut(s) 1577, 1685, 2334, 4557, 7550, 8997
TspGWI ACGGA 8 cut(s) 2430, 3287, 3579, 3835, 4975, 5482, 6681, 7138
TspMI CCCGGG 1 cut(s) 6529
Tth111I GACNNNGTC 1 cut(s) 2363
Van91I CCANNNNNTGG 3 cut(s) 1226, 1804, 4845
VneI GTGCAC 4 cut(s) 904, 4747, 5199, 7155
VspI ATTAAT 1 cut(s) 7008
XagI CCTNNNNNAGG 2 cut(s) 316, 5411
XbaI TCTAGA 2 cut(s) 289, 3917
XcmI CCANNNNNNNNNTGG 2 cut(s) 1840, 5189
XmaI CCCGGG 1 cut(s) 6529
XmiI GTMKAC 3 cut(s) 2940, 5665, 8952
XmnI GAANNNNTTC 6 cut(s) 918, 3578, 4611, 8065, 8371, 8415
ZraI GACGTC 1 cut(s) 6992
ZrmI AGTACT 1 cut(s) 1429
Zsp2I ATGCAT 9 cut(s) 1291, 2445, 2692, 3649, 5370, 5853, 8560, 9610, 9614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.