Rroxscaffold_2G00126250

phagosome-lysosome fusion involved in apoptotic cell clearance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003216
Physical Location & Seq
Forward (+)
61390442 .. 61407997
17556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126250.1

Sequence Viewer

Length: 9285 bp
ATGGATTTGTCTGTGGGTGATAAGGGACTTGCTATACTTCAGTTGCTCAAATGGGGCCCTTCTCAGCCCCAACTAAACTTGTCGGAATTTCGTGAAGCTTTCATTTCACCTACAAGACAGTTATTATTATTGCTTTCGTATCAGTGTGAGGCTTTATTGTTTCCTCTAATTGCAGGTAGTAATAATTTGGAGTGTAATATTGAAGAAAGTCTTCAAAGTCCAGAGACAGAGCCTGGTAGGTCAGATTTAATAAGGGACGATTTGCCATGCACATCTGGATCATTAGGAGATGTTGATAATGATTTGAGTTATGGAGGGGATAGTTTAAGATCTAAAAGTTACCCTTTTATCGGTGATGTTAATTCTCTGGCTTGGGGCATTTGTGAGGACACTTATAATCAGCACAAGGATGCTTTATTTAGAGAACTTTTGTTTGTCTGTGGCAAGCAAGGCATTATGGTCCATGCTTTTGTTGAATCTACCGGAAATACTGCAACTACCAGCAATGCACGGGAAGGTGGGTATGGGAAAGGGAGGTGGGTTGAGTGGGGGCCTTCTGCATCTTTAATTGGAAATATGGAGGTGGAAGAACCTACCAGCTTGAGTTCTGAAGCTACTGGAAATATTGAATTTAACAAACCCAATGGAAACAGTGAAAGTCCCCATATTTGTAATGTGGATGGGAATGATGTGTTCTCAAAAAGTGTTGCTTCTAAAAGATGGTTGCAATCTTTTTTGACTAAAGTTGAAAATGTTGAATATAATGGTAAGATATTGACCAGGTTCCCAGAAAAATCATTGTTGCCTAGCTGTGCAAGAGTTGTTTCATTTAGTTTATTTAGTAGTAATTCGCCACTTTTGGACTACCTTTCAAACAATGATTCTGCATCAGATATGGCGTGCGGTCAGGAAACGGTTCATGAGTCAGAGAGTGATAAATCTCTGAAATTAGACATAACTTCATCGGATCCACATTTCAAGTCTGAGACTTTGTCCAATCTTTTGGGTGTTGGAATGAATAGTGTATACAAATGCTGCAGAGTGTTCTCAAGCAATTCACATTACTTCATTGGATTTGTTTTCACACAGGTTGATCCGGTAATTGTCAATGCTAGTGATGAAAGTGGAAAAAGCAAGAAGAATAATGTACTGCTTATTGCTAGATTAGATGACATGGGAATTCATTGGGTTTCCTCAGTGAAGCTTGACGAAAGTCCAAATATTGGCTCAGTAGCACAGTGGACAGACTTCCACTTTTCTGATAAACTTCTTGTTTGTCTTAATGCTTGTGGGCTAATTGTATTTTATGCAGCAATGTCAGGTGAGTATGTTGCACATATAGATATTTTACAGACTTTAGGACTCAAGCCTGAGTTGCATTTGCAGAAGCAGGAAGCAGTTTCGACAGGTTATGATAAGCATATTAGTCAAGTTGACGACATTCAGAACAAATCAGTTTTGCAACATGTTGATTATTCTGGCAGGAGACTGTTTAAAAGGTTGATTTCTGCTTCACATACCTCTCTAGTAGCTGCTATTGATGATTATGGTGTAATATATGTGGTTTCTGCTGGTGAATATCTACCGGACAAATATTATACAAATGCGAAACTACTTCCACATATTCAGCATCTGGAACTTGGTATGTTGGCTGGTTGGGAGGTTGGTGGTTCTGATATAAGCCACCAGAGGGTATATTCTGACATATCTGGTTTGTGGAATTCTATGATTCCATCCATGATGAAAGGAAGATCCTTCCTGGATGGCTCTGGGAAACAAGTGCTTCAGAGAAACCACGAGTTATACCTCAAACAAGAAGGGATTGGATACAGATCTGAAGTCACTGATCAGAAGCTTGATGACTCTCACAGAAAGTCACACCTTATGCGCAGGATCTTTGTTCCCAGTTACAGATTTAGTGAGAAGGATACTATCTGTTTTTCTCCATTGGGAATTACTCAGCTTATGAAGAACCAAAATTTGCATGATCAGAGGGGTTCTCAAATTGTTCATCTCAATCTGCATGCAGAATCAGCAGTTCGTGATGACAGCTTTTTGAATACTGGTTGTAAAAAGGTTTATCTCCACGGGAAAGAAGAATCCTTTATTGATGAGGCATTGGGTTGCACATTCCAGGGATGCATTTATTTGGTTACAGTAAGTGGACTTTCGGTGGTGCTTCCCTCTATAGCAGTTTCATCAAATTTTCTTCCTGTAGAAGTTATTGGATGTCGGCAGTTGTGTGTCAACTCAGGCATTGGTTATCAAGTGAAAGATATAAGGGAAGCTAAAGAATCTAAACAGCCTTGGTCACCATGGAGTGTTGAAATTATGGACAGAGTTATCCTATATGAAAGCGCTGAAGAAGCCGATCGCTTATGCTTGGAGAATGGTTGGGACCTGAAAATATCTCGGATGCGCCGGCTGCAGTTGGCATTGGATTACTTGAAATTTGATGAGATAGAGCGATCATTAGAAAACCTTGTGGGTGTCAATTTGGCAGAAGAGGGTGTACTGAGATTGCTATTTGCGGCTGTTTATCTGATGCTTCGTAAAGTTGGCAATGATAATGAGGTTTCTGCTGCATCAAGGCTTCTTGCATTAGCCACTTTTTTTGCGACGAAAATGATTCGCAAGTATTGGTTGCTAGAACATAGGCAAGATGCATATGAATCTGGTAGGACCCAAATTCTCTCTCTTCCATCAGTTTCACCGGTGAAGGAAGAAGATGAAATGGCAAATTCAAGGAGGCTTAGTGAGATGGCTCACTTTTTGGAGATAATTCGAAATCTGCAATCTCGACTTGGTTCCAAGTATAAGAGGCCAGGCCAAGAATCGGTGGATAGTGGGGAAGCATCAAGATTGGTTGACACTGATTTATTGCAGAACGAATCTCAGCTATCAATTGTATCTGTGGACACTATATCTTTGGAGACATCAAAACAGCATGAAGTTTCTTTCCCTGTATCGACATCAGGATTTAACTATGCTGATAATCTTGCTTTAACACCTGTGGATTCTAAAGTCCCTTTGGACCCAGAAGATTTAAGTGAAGTATCTGCTCTTGTGCCACGAGAAGGTCTCTTAGAGAAGAAAATTCTTCCCTTAGAGAATCCCAAAGAGATGATTGCTCGTTGGAAGATAGATAATCTAGACCTTAGGGCTGTAGTCAGTGATGCTTTACTCTCTGGTCGTCTGCCCTTAGCAGTTCTTCAACTACATCTTCACCGTTCAAGAGATTCATTTTCTGGAAAGGAGCCTCATGATACTTTCACTGAAGTCCGTGACGTTGGAAGAGCTATTGCTTATGACCTATTTTTGAAGGGTGAATCTGGACTTGCTGTGGCCACATTGCAAAGGCTAGGAGAGGATGTAGAAACCACCCTTAAGCAGTTATTATTCGGCACAGTGAGACGATCTCTTCGTGTGCAAATCACTGAGGAGATGAATAAATATGGTTATCTGGGATCTTATGAGTGGAAGATATTGGATAGGATATCACTTATTGAGAGGCTATACCCCAGCAGTAGTTTTTGGAAAACGCTTCATGGACGGCAGAAAGAGTTCACTCGAATTCCAGCAAGTTCCAGTGTGCCCAGGAGATATTATTTGCGCCTACTGGATTCACCTGTAGTCAACAATTTTACCATCGATTGTGATGAAATTGATGGAGTTGTTTTTGGTTCATGGACAAACATAAATGAAAATCCTTCTGGTCCTATGGTTGATGAAGATAATGCGTACGCTGGTTACTGGGCTGCTGCTGCTGTATGGTTTAATTTCTATGATCAAAGAACTGTTGATCGAATTGTTTTGGATCAGTCATCTTTCATGGGTGTGCATGTATTGTGGGAATCACAGCTTGAGTACCATGCATGCCACAATGACTGGGAGGAAGTCTCTAGACTCCTGGACCTTATTCCTGAACATGCTCTAGTTGTTGGAAGCCTCCAAATCAATTTGGATGGGCTACAGCCTGCTTCAACTTTTGAATGCAATAGAGGTTATGAGTATGGTGATTATCTCTGCTCTGTTGAAGAATTGGATGCTGTTTGCATGGATGTACCAGAGATCAAAGTTTTCAGGTTTTCGTGTAATGTCATGTGCTCCATATGGTTAAAGAGGCTGATGGAAGAGAAACTTGCAAGGAAACTAATTTTCTCAAAGGAATATTGGGAAGGCACAGCAGATATACTACCTCTTCTTGCCCGTTCTGGCTTCATTACTAGCAAGTATGAGATCCCTTCAGAGGATGATAATATTGAGGATATTTCAGTCCTGAAATTTCCGGATGGTGGTACTGTACAGGCTTTACATAAACTACTTATTCATCATAGTGCACGGTACAACTTGCCATTCCTTCTGGACCTTTACCTTGACCAGCACGAGTTGGTAGCAGATAGTGATTCAGTTCGTTCACTTCAGGAAGCCGCAGGAGATTGTCAATGGGCACAATGGTTGCTCCTCTCTAGGGTGAAAGGGTGTGAGTATGAAGCATCATTTTCCAATTCTCGCGCGATACTGTCACACAATCTAGTTCCGGATAGTAACCTCCGTGTTCCAGAGATGGATGAAATAATTCGTACTGTTGATGACATTGCAGAAGGAGGGGGAGAACTGGCAGCTCTGGCAACCTTAATGTATGCCTCTGCCCCCTTTCAAAGTTGTCTGAGTAGTGGCAGTGTAAAGAGGCATAGTAGTACATCAGCCCAGTGCACACTGGAGAATCTCAGGCCCACTCTTCAGCGTTTTCCTACACTGTGGCACACATTTGTATCAGCATGTTTCGGGCAAGATACAACTTCCAATCTTGTGGGGCCTAAAGCAAAGAATGGTTTTTCAGATTATTTAACATGGCGTGATGACATATTCTTATCTTCTGGACGTGATACTTCACTTCTGCAAATGCTTCCATGCTGGTTTCCTAAGGCTGTGCGGAGGTTAATTCAGCTTTATGCTCAGGGTCCTCTTGGATGGCAATCAATAGCAGGTCTGCCTGTGGGAGGAGGTCTGCTGCAAAGAGATATAGATTTTGTCCTAAACACTGATGAGGATGTAGAAATCAGCGCACTCTCCTGGGAAGCAACTATCCAAAAACACATTGAGGAGGAACTCTACAATTCTGCACTTGAGGTCACGCCACTTGCAATTATGCATTTTGAGGATTCTGTGCTGGTGGCTTCATGCGCTTTTCTACTGGAGCTTTTTGGATTTTCTGCCAGCATGCTCCGCATAGACATTGCTGCCCTGAAACGGATTGATATAATGGAGTCTCTGGCTCGAGCTCTAGCCGATGAGTATCTGCAGCAGGATAGTGCAAGCATGAGTAAGAAAAAGGGTACTCCAAGTTTAGCTGCTCGTAAACAACCTTCACGAGCTCTCATGCTTTTCTTAGAATTCTTGGAGAAGGCTAGCCTTCCTCCAATGGTGGATGGGAAAACATGTGGGTCTTGGCTGTTGAGTGGCGATGGTGATGGAATCGAGTTGAGATCTCAACAGAAAGCTGCAAGCCATCGCTGGAACTTGGTTACAATTTTCTGCCAGATGCACCACCTTCCCTTGAGCACAAGATATCTTTCTGTACTGGCAAGAGACAATGATTGGGTTGGCTTTTTGTCAGAAGCTCAGATTGGTGGATATCCTTTTGACACAGTGGTCCAAGTGGCATCAAAGGACTTCAGTGATCAACGTCTCAAAATTCATATTTCAACAGTTCTGAAAGGCATGCAGTCAAGAAGAAAAGCTAGCTCTTCAACAAATACAGATACTATGGAAAAAAGGAGTGAAGCTTCCTTTACCAATGAAAGCATTTGTGTCCCAGTTGAGCTTTTTAGAATATTAGCAGAATGTGAAAAGCAGAAAAATCCTGGAGAGGCCATTTTGATGAAAGCAAAGGAGTTATCCTGGTCAATTTTGGCAATGATTGCATCATGCTTTTCAGACGTGTCTCCAATATCTTGCCTAACAGTCTGGCTGGAAATAACTGCTGCAAGGGAAACTTCATCTATCAAGGTGAATGATATTGCTTCCAGAATTGCAAATAATGTTGGAGCAGCTGTGGAAGCTACTAATGCTCTGCAAGCAGGAGGGAGTAAATCTCTTACATTTCATTACAATAGGCAGAATTCAAAGAGGAGGCGGCTCCTGGAACCCAACTCAGGAGATCCCTCAGCTGCTACAGTGTCTGAAATTTTGGATTCTCCTGTGGGTGCAAAAATATTTGATAACCAGCGAACTATTTCTGAAGGCGAAAGAAATATAAAACTTGGCGGAAATATGAATGTTTCAGCTGATTCTGATGAAGTGTCTGTTTCGCTGTCCAAGATGGTTTCAGTGCTTTGTGAGCAACACCTGTTCCTGCCTTTGTTAAGGGCATTCGAAATGTTCCTTCCTTCATGTTCTCTCGTACCTTTCATACGTGCACTTCAGGCATTTTCACAAATGCGCCTTTCTGAAGCATCAGCTCATTTAGGTTCCTTTTCTGCCCGAATTAAAGAAGAGTCGACTCGCTTACAGGCAAATGTAGGAAGAGATGTGCACATTGGTGCATCATGGATAAGCTCTACGGCTATTAAAGCTGCGGATGCTATGCTTTTGACATGTCCATCTCCTTATGAAAAGAGATGCTTACTAAAACTCCTTGCTGCCACTGATTTTGGTGATGGAGGCTCTGCAGCTACTCATTACCAGCGGCTTCATTGGAAAATCAATTTAGCGGAGCCACTATTACGCAAGGATGATAATTTACACCTAGGGAATGAAACTCTAGATGATGGTGCACTTGCAACAGCATTGGAAAGTAATAGACACTGGGAGCAAGCACGCAGCTGGGCGAGACAGTTGGAGGCCAGTGCTGGAGTTTGGAAATCTGCTGTTCATCATGTAACTGAAACTCAGGCTGGGCTATTTTTCCTCAAGCATGCAGAAGCTCTGGAAAAAGATCTTCCAGCTAGGGAGCTTCATGAGCTGTTACTGCTTTCACTACAATGGTTGAGCGGAATGATTACTCTGTCCAATCTAGTTTATCCACTTCATCTGATTCGGGAAATCGAGACTAGAGTATGGCTCTTGGCGGTAGAATCAGAGGCACAAGGTAAGAGTGAAGGAGACTTCAATCTAAGCAGTTCCATCCGTGATCCTATTCACAAAAATAGCTCTAGTATTATTGACAGAACAGCAAGTATCATAACAAAAATGGACAATCACATCGGTACATTTAAGAACAGAACTGTAGAGAAACATGATGCAAGGGAAAATAACCTGGTGTATCACAAGAACCAAGTATTAGATGTTAGCTTTCCAACCACAACAGCAGGGAGTACAAAGACTAAGCGAAGGGCAAAAGGCTATGTGCCATTACGACGGCCAGTACTAGACTCGCCAGAAAAAAGCGGTGATCTTGATGAGGGTTCTAATTCTCTCAATGTTAGATATGAATTGCAGTTTCAGGATGAAAACTCAAAAACAGACATGTCCTTTTCACGGTGGGAGGAAAGGGTTGGACCTGCAGAGCTGGAAAGGGCTGTTCTTTCTTTATTAGAATTTGGACAAATAGCTGCTGCAAAGCAACTCCAGCATAAGCTGTCTCCAGTAAAAGTACCATCTGAAATTTTACTTGTGGATGCCGCACTGAAGCTTGCAGCTATGTCAACTCCAAGTAAAAAAGTATCTATAGCAATGCTTGATGAAGAAGTACATTCAGTTATTCAGTCCCACCATATTCTAACCCAGCAACATGAAGTTGATACAGTGCAGGTTTTGGAGAGTCTAGCAACCATTTTTACTGAAGGTTGCGGACGTGGACTATGCAAGAGGATAATAGCAGTCAACAAAGCAGCAAGCATGTTAGGTCTTCCATTTTTGGAGGCATTTGTTAAGCAGCCAATTGAATTACTACAGCTGCTTTCTCTTAAAGCACAAGAATCATTTGAGGAGGCAAATCTCCTTGTCAGAACTCATTCAATGCTCGCAGCCAGTATTGCTCAGATTCTTTCCGAATCCTTTCTAAAGGGCTTATTGGCTGCTCATCGTGGGGGATATATGGATTCTCAAAAAGAAGAAGGACCTGCTCCCTTACTCTGGAGGTTTTCAGACTTCTTAAAGTGGGCAGAGCTTTGTCCTTCTGAACAAGAAATTGGGCATGCACTAATGCGCTTGGTTATTACTGGACAAGAAATACCACATGCCTGCGAGGTTGAGCTTCTAATTTTGTCACACCACTTCTACAAATTATCATCTTGCCTTGATGGAGTTGATGTACTTGTAGCCCTTGCAGCTACTAGAGTTGAAGCTTATGTGTCTGAGGGTGATTTTTCATGTTTGGCTCGTCTGATAACTGGAGTAGGAAACTTCCACGCCCTCAATTTCATTCTCGGAATTCTTATTGAAAATGGCCAACTGGATCTCCTTCTTCAGAAGTATTCAGCTGCTGCAGATGCGAATGCTGGCACTGCTGAGGCCGTCCGCGGATTTCGGATGGCTGTTCTGACATCATTGAAGCATTTTAATCCCAATGACCTTGATGCTTTTGCTATGGTCTATAATCACTTTGACATGAAACATGAAACGGCTGCTCTTTTGGAGTCACGAGCAGAGCAGTCATCAGAACAGTGGTTCTGTCGTTCTGACAAGGATCAGAATGAGGACCTTCTAGACTCTATGCGTTATTACATTGAAGCTGCTGAAGTTCACAAATCCATTGATGCTGGCAACAAAACACGCAGAGCATGTGCTCAGGCCTCCCTCTTATCTCTTCAGATTCGAATGCCAGATTTCCAATGGCTGTACCGATCCGAAACCAATGCCAGGCGTGCTCTAGTTGAGCAGTCTCGTTTCCAAGAGGCCCTCATTGTTGCTGAAGCCTATGGTCTTAACCAGCCAAGTGAGTGGGCTTTGGTACTTTGGAACCAGATGCTCAAACCAGAAGTTCTGGAAGATTTTGTGGCTGAATTTGTGGCTGTTCTTCCTCTCCAGCCCTCAATGCTTGCTGATCTAGCAAAGTTTTATAGGGCCGAGGTGGCAGCGAGAGGGGACCAGTCCCAGTTCTCAGTTTGGTTAACTGGGGGAGGGTTGCCAGCGGAATGGGCAAAATATCTGGGGAGGTCGTTTCGATGCTTGTTGAAAAGGACTAGAGATTTAAGGTTGAGGTTGCAGCTGGCTACTGTGGCAACTGGTTTTGGAGATGTTATTGATGCATGCACGAAGGCGTTGGATAGGGTGCCTGAGAATGTAGGACCTCTTGTCCTGAGGAAAGGCCACGGTGGTGCTTATCTACCACTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spatacsin_C

Protein Analysis

3094

Amino Acids

345.04

Weight (kDa)

5.51

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spatacsin_C PF14649 2712 - 3003 3.8e-73 Spatacsin C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AasI GACNNNNNNGTC 1 cut(s) 5654
Acc16I TGCGCA 1 cut(s) 1889
Acc36I ACCTGC 5 cut(s) 164, 4979, 7513, 7744, 8074
AccB1I GGYRCC 1 cut(s) 9217
AccB7I CCANNNNNTGG 1 cut(s) 1223
AccBSI CCGCTC 1 cut(s) 6996
AccI GTMKAC 2 cut(s) 1026, 6503
AccII CGCG 3 cut(s) 4515, 4517, 8466
AccIII TCCGGA 2 cut(s) 4288, 4540
AcoI YGGCCR 3 cut(s) 3345, 7364, 8392
AfeI AGCGCT 1 cut(s) 2359
AflII CTTAAG 1 cut(s) 3386
AflIII ACRYGT 5 cut(s) 1465, 5441, 5943, 6599, 7470
AgeI ACCGGT 1 cut(s) 2713
AhdI GACNNNNNGTC 1 cut(s) 9239
AjiI CACGTC 3 cut(s) 4886, 5944, 7799
AjuI GAANNNNNNNTTGG 4 cut(s) 5613, 5645, 8118, 8150
AleI CACNNNNGTG 3 cut(s) 6543, 9261, 9280
Alw44I GTGCAC 5 cut(s) 4338, 4714, 6420, 6536, 6777
AlwNI CAGNNNCTG 4 cut(s) 233, 1633, 6185, 8429
Ama87I CYCGRG 1 cut(s) 5280
Aor13HI TCCGGA 2 cut(s) 4288, 4540
Aor51HI AGCGCT 1 cut(s) 2359
ApaI GGGCCC 1 cut(s) 59
ApaLI GTGCAC 5 cut(s) 4338, 4714, 6420, 6536, 6777
ArsI GACNNNNNNTTYG 2 cut(s) 3405, 3437
AsiGI ACCGGT 1 cut(s) 2713
Asp700I GAANNNNTTC 7 cut(s) 210, 915, 3563, 4578, 6238, 7957, 8001
AspA2I CCTAGG 1 cut(s) 6751
AspLEI GCGC 9 cut(s) 1890, 2360, 2421, 3615, 4517, 5069, 5189, 6447, 8154
AsuII TTCGAA 3 cut(s) 2785, 6378, 8761
AsuNHI GCTAGC 2 cut(s) 5411, 5744
AvaI CYCGRG 1 cut(s) 5280
AvrII CCTAGG 1 cut(s) 6751
AxyI CCTNAGG 3 cut(s) 3158, 4926, 9245
BaeGI GKGCMC 8 cut(s) 59, 3597, 4342, 4453, 4718, 6424, 6540, 6781
BaeI ACNNNNGTAYC 2 cut(s) 4758, 4791
BalI TGGCCA 2 cut(s) 3347, 8394
BamHI GGATCC 1 cut(s) 967
BanI GGYRCC 1 cut(s) 9217
BanII GRGCYC 3 cut(s) 59, 5287, 5380
BarI GAAGNNNNNNTAC 4 cut(s) 2496, 2528, 5353, 5385
BauI CACGAG 5 cut(s) 1796, 3072, 4385, 5373, 8586
BbsI GAAGAC 2 cut(s) 203, 7844
BbvCI CCTCAGC 2 cut(s) 6169, 8454
BceAI ACGGC 5 cut(s) 3569, 6582, 7379, 8444, 8583
BcgI CGANNNNNNTGC 2 cut(s) 8783, 8817
BciVI GTATCC 2 cut(s) 1820, 1921
BclI TGATCA 4 cut(s) 1846, 1987, 3787, 5683
BfoI RGCGCY 1 cut(s) 2361
BfrI CTTAAG 1 cut(s) 3386
BfuAI ACCTGC 5 cut(s) 164, 4979, 7513, 7744, 8074
BfuI GTATCC 2 cut(s) 1820, 1921
BglI GCCNNNNNGGC 1 cut(s) 9017
BglII AGATCT 4 cut(s) 329, 1832, 5489, 6940
BlnI CCTAGG 1 cut(s) 6751
BmcAI AGTACT 1 cut(s) 7371
BmeRI GACNNNNNGTC 1 cut(s) 9239
BmeT110I CYCGRG 1 cut(s) 5280
BmgBI CACGTC 3 cut(s) 4886, 5944, 7799
BmrI ACTGGG 8 cut(s) 1899, 3763, 3898, 4705, 5813, 6820, 9034, 9069
BmtI GCTAGC 2 cut(s) 5415, 5748
BmuI ACTGGG 8 cut(s) 1899, 3763, 3898, 4705, 5813, 6820, 9034, 9069
BoxI GACNNNNGTC 1 cut(s) 1212
BpiI GAAGAC 2 cut(s) 203, 7844
BpmI CTGGAG 9 cut(s) 4742, 5219, 5889, 6876, 7556, 7572, 8101, 8358, 8954
Bpu10I CCTNAGC 5 cut(s) 3202, 4959, 6169, 8454, 8733
Bpu14I TTCGAA 3 cut(s) 2785, 6378, 8761
BpuEI CTTGAG 7 cut(s) 622, 1033, 1349, 3884, 5150, 5581, 6899
Bsa29I ATCGAT 1 cut(s) 3651
BsaAI YACGTR 1 cut(s) 6419
BsaBI GATNNNNATC 3 cut(s) 1831, 4978, 5298
BsaI GGTCTC 1 cut(s) 3086
BsaWI WCCGGW 6 cut(s) 482, 1096, 1585, 2713, 4288, 4540
Bse118I RCCGGY 2 cut(s) 2421, 2713
Bse21I CCTNAGG 3 cut(s) 3158, 4926, 9245
Bse3DI GCAATG 8 cut(s) 511, 1320, 2569, 3350, 4596, 5238, 5925, 7683
Bse8I GATNNNNATC 3 cut(s) 1831, 4978, 5298
BseAI TCCGGA 2 cut(s) 4288, 4540
BseCI ATCGAT 1 cut(s) 3651
BseJI GATNNNNATC 3 cut(s) 1831, 4978, 5298
BseMI GCAATG 8 cut(s) 511, 1320, 2569, 3350, 4596, 5238, 5925, 7683
BseRI GAGGAG 6 cut(s) 3455, 4454, 5019, 5120, 6148, 7946
BseSI GKGCMC 8 cut(s) 59, 3597, 4342, 4453, 4718, 6424, 6540, 6781
BseYI CCCAGC 4 cut(s) 3521, 6828, 6899, 7728
BsgI GTGCAG 2 cut(s) 5109, 7772
Bsh1236I CGCG 3 cut(s) 4515, 4517, 8466
Bsh1285I CGRYCG 1 cut(s) 2374
BshNI GGYRCC 1 cut(s) 9217
BshTI ACCGGT 1 cut(s) 2713
BshVI ATCGAT 1 cut(s) 3651
BsiEI CGRYCG 1 cut(s) 2374
BsiHKCI CYCGRG 1 cut(s) 5280
BsiSI CCGG 7 cut(s) 483, 1097, 1586, 2422, 2714, 4289, 4541
BsiWI CGTACG 1 cut(s) 3741
BslFI GGGAC 9 cut(s) 39, 269, 645, 2411, 3011, 5801, 7696, 9022, 9044
BsmBI CGTCTC 2 cut(s) 3406, 5696
BsmFI GGGAC 9 cut(s) 39, 269, 645, 2411, 3011, 5801, 7696, 9022, 9044
BsmI GAATGC 4 cut(s) 3998, 6374, 8446, 8769
Bso31I GGTCTC 1 cut(s) 3086
BsoBI CYCGRG 1 cut(s) 5280
Bsp119I TTCGAA 3 cut(s) 2785, 6378, 8761
Bsp120I GGGCCC 1 cut(s) 55
Bsp13I TCCGGA 2 cut(s) 4288, 4540
Bsp1407I TGTACA 1 cut(s) 4303
Bsp19I CCATGG 1 cut(s) 2315
BspDI ATCGAT 1 cut(s) 3651
BspEI TCCGGA 2 cut(s) 4288, 4540
BspFNI CGCG 3 cut(s) 4515, 4517, 8466
BspHI TCATGA 3 cut(s) 919, 3262, 6961
BspMAI CTGCAG 6 cut(s) 1040, 2430, 5307, 6676, 7510, 8434
BspMI ACCTGC 5 cut(s) 164, 4979, 7513, 7744, 8074
BspOI GCTAGC 2 cut(s) 5415, 5748
BspQI GCTCTTC 2 cut(s) 3289, 5755
BspT104I TTCGAA 3 cut(s) 2785, 6378, 8761
BspT107I GGYRCC 1 cut(s) 9217
BspTI CTTAAG 1 cut(s) 3386
BspTNI GGTCTC 1 cut(s) 3086
BsrBI CCGCTC 1 cut(s) 6996
BsrDI GCAATG 8 cut(s) 511, 1320, 2569, 3350, 4596, 5238, 5925, 7683
BsrFI RCCGGY 2 cut(s) 2421, 2713
BsrGI TGTACA 1 cut(s) 4303
BssAI RCCGGY 2 cut(s) 2421, 2713
BssNAI GTATAC 1 cut(s) 1027
BssSI CACGAG 5 cut(s) 1796, 3072, 4385, 5373, 8586
BssT1I CCWWGG 3 cut(s) 2306, 2315, 6751
Bst1107I GTATAC 1 cut(s) 1027
Bst2BI CACGAG 5 cut(s) 1796, 3072, 4385, 5373, 8586
BstAFI CTTAAG 1 cut(s) 3386
BstAPI GCANNNNNTGC 1 cut(s) 5924
BstAUI TGTACA 1 cut(s) 4303
BstBAI YACGTR 1 cut(s) 6419
BstBI TTCGAA 3 cut(s) 2785, 6378, 8761
BstDSI CCRYGG 4 cut(s) 2086, 2315, 8464, 9256
BstEII GGTNACC 1 cut(s) 2310
BstENI CCTNNNNNAGG 1 cut(s) 5001
BstFNI CGCG 3 cut(s) 4515, 4517, 8466
BstH2I RGCGCY 1 cut(s) 2361
BstHHI GCGC 9 cut(s) 1890, 2360, 2421, 3615, 4517, 5069, 5189, 6447, 8154
BstMCI CGRYCG 1 cut(s) 2374
BstPAI GACNNNNGTC 1 cut(s) 1212
BstPI GGTNACC 1 cut(s) 2310
BstSLI GKGCMC 8 cut(s) 59, 3597, 4342, 4453, 4718, 6424, 6540, 6781
BstUI CGCG 3 cut(s) 4515, 4517, 8466
BstV2I GAAGAC 2 cut(s) 203, 7844
BstXI CCANNNNNNTGG 4 cut(s) 1003, 4813, 8886, 9081
BstZ17I GTATAC 1 cut(s) 1027
Bsu15I ATCGAT 1 cut(s) 3651
Bsu36I CCTNAGG 3 cut(s) 3158, 4926, 9245
BsuI GTATCC 2 cut(s) 1820, 1921
BsuTUI ATCGAT 1 cut(s) 3651
BtgI CCRYGG 4 cut(s) 2086, 2315, 8464, 9256
BtgZI GCGATG 2 cut(s) 5481, 5498
BtrI CACGTC 3 cut(s) 4886, 5944, 7799
BtsI GCAGTG 2 cut(s) 4687, 8448
BveI ACCTGC 5 cut(s) 164, 4979, 7513, 7744, 8074
CaiI CAGNNNCTG 4 cut(s) 233, 1633, 6185, 8429
CciI TCATGA 3 cut(s) 919, 3262, 6961
CfoI GCGC 9 cut(s) 1890, 2360, 2421, 3615, 4517, 5069, 5189, 6447, 8154
Cfr10I RCCGGY 2 cut(s) 2421, 2713
Cfr42I CCGCGG 1 cut(s) 8467
ClaI ATCGAT 1 cut(s) 3651
CsiI ACCWGGT 2 cut(s) 779, 7260
CspAI ACCGGT 1 cut(s) 2713
CspCI CAANNNNNGTGG 4 cut(s) 2596, 2631, 6637, 6672
DraI TTTAAA 1 cut(s) 1495
DrdI GACNNNNNNGTC 1 cut(s) 5654
DriI GACNNNNNGTC 1 cut(s) 9239
DseDI GACNNNNNNGTC 1 cut(s) 5654
EaeI YGGCCR 3 cut(s) 3345, 7364, 8392
Eam1105I GACNNNNNGTC 1 cut(s) 9239
EciI GGCGGA 1 cut(s) 6285
Ecl136II GAGCTC 2 cut(s) 5285, 5378
Eco130I CCWWGG 3 cut(s) 2306, 2315, 6751
Eco147I AGGCCT 1 cut(s) 8738
Eco24I GRGCYC 3 cut(s) 59, 5287, 5380
Eco31I GGTCTC 1 cut(s) 3086
Eco32I GATATC 3 cut(s) 3498, 5573, 5639
Eco47III AGCGCT 1 cut(s) 2359
Eco53kI GAGCTC 2 cut(s) 5285, 5378
Eco81I CCTNAGG 3 cut(s) 3158, 4926, 9245
Eco88I CYCGRG 1 cut(s) 5280
Eco91I GGTNACC 1 cut(s) 2310
EcoICRI GAGCTC 2 cut(s) 5285, 5378
EcoNI CCTNNNNNAGG 1 cut(s) 5001
EcoO65I GGTNACC 1 cut(s) 2310
EcoRI GAATTC 6 cut(s) 1179, 1720, 3573, 5396, 6124, 8376
EcoRV GATATC 3 cut(s) 3498, 5573, 5639
EcoT14I CCWWGG 3 cut(s) 2306, 2315, 6751
EcoT22I ATGCAT 5 cut(s) 2144, 2668, 3877, 5157, 9196
EcoT38I GRGCYC 3 cut(s) 59, 5287, 5380
ErhI CCWWGG 3 cut(s) 2306, 2315, 6751
Esp3I CGTCTC 2 cut(s) 3406, 5696
FaqI GGGAC 9 cut(s) 39, 269, 645, 2411, 3011, 5801, 7696, 9022, 9044
FauNDI CATATG 2 cut(s) 2668, 4112
FbaI TGATCA 4 cut(s) 1846, 1987, 3787, 5683
FblI GTMKAC 2 cut(s) 1026, 6503
FriOI GRGCYC 3 cut(s) 59, 5287, 5380
FspI TGCGCA 1 cut(s) 1889
GlaI GCGC 9 cut(s) 1889, 2359, 2420, 3614, 4516, 5068, 5188, 6446, 8153
GsaI CCCAGC 4 cut(s) 3525, 6832, 6903, 7732
GsuI CTGGAG 9 cut(s) 4742, 5219, 5889, 6876, 7556, 7572, 8101, 8358, 8954
HaeII RGCGCY 1 cut(s) 2361
HapII CCGG 7 cut(s) 483, 1097, 1586, 2422, 2714, 4289, 4541
HhaI GCGC 9 cut(s) 1890, 2360, 2421, 3615, 4517, 5069, 5189, 6447, 8154
Hin6I GCGC 9 cut(s) 1888, 2358, 2419, 3613, 4515, 5067, 5187, 6445, 8152
HinP1I GCGC 9 cut(s) 1888, 2358, 2419, 3613, 4515, 5067, 5187, 6445, 8152
HincII GTYRAC 8 cut(s) 1435, 2248, 2869, 3637, 6504, 7650, 7828, 9057
HindII GTYRAC 8 cut(s) 1435, 2248, 2869, 3637, 6504, 7650, 7828, 9057
HindIII AAGCTT 6 cut(s) 96, 1202, 1853, 5787, 7634, 8289
HpaI GTTAAC 1 cut(s) 9057
HpaII CCGG 7 cut(s) 483, 1097, 1586, 2422, 2714, 4289, 4541
Hpy99I CGWCG 2 cut(s) 2623, 7365
HpyCH4IV ACGT 6 cut(s) 3288, 4885, 5689, 5943, 6418, 7798
HpySE526I ACGT 6 cut(s) 3288, 4885, 5689, 5943, 6418, 7798
HspAI GCGC 9 cut(s) 1888, 2358, 2419, 3613, 4515, 5067, 5187, 6445, 8152
Kpn2I TCCGGA 2 cut(s) 4288, 4540
KroI GCCGGC 1 cut(s) 2421
KroNI GCCGGC 1 cut(s) 2423
Ksp22I TGATCA 4 cut(s) 1846, 1987, 3787, 5683
KspAI GTTAAC 1 cut(s) 9057
KspI CCGCGG 1 cut(s) 8467
LguI GCTCTTC 2 cut(s) 3289, 5755
MabI ACCWGGT 2 cut(s) 779, 7260
MaeII ACGT 6 cut(s) 3288, 4885, 5689, 5943, 6418, 7798
MbiI CCGCTC 1 cut(s) 6996
MfeI CAATTG 2 cut(s) 2904, 7884
MlsI TGGCCA 2 cut(s) 3347, 8394
MluNI TGGCCA 2 cut(s) 3347, 8394
Mox20I TGGCCA 2 cut(s) 3347, 8394
Mph1103I ATGCAT 5 cut(s) 2144, 2668, 3877, 5157, 9196
MroI TCCGGA 2 cut(s) 4288, 4540
MroNI GCCGGC 1 cut(s) 2421
MroXI GAANNNNTTC 7 cut(s) 210, 915, 3563, 4578, 6238, 7957, 8001
MscI TGGCCA 2 cut(s) 3347, 8394
MslI CAYNNNNRTG 8 cut(s) 408, 3836, 4335, 5882, 6543, 6985, 9261, 9280
Msp20I TGGCCA 2 cut(s) 3347, 8394
MspCI CTTAAG 1 cut(s) 3386
MspI CCGG 7 cut(s) 483, 1097, 1586, 2422, 2714, 4289, 4541
MunI CAATTG 2 cut(s) 2904, 7884
Mva1269I GAATGC 4 cut(s) 3998, 6374, 8446, 8769
MvnI CGCG 3 cut(s) 4515, 4517, 8466
NaeI GCCGGC 1 cut(s) 2423
NcoI CCATGG 1 cut(s) 2315
NdeI CATATG 2 cut(s) 2668, 4112
NgoMIV GCCGGC 1 cut(s) 2421
NheI GCTAGC 2 cut(s) 5411, 5744
NmeAIII GCCGAG 1 cut(s) 9037
NmuCI GTSAC 8 cut(s) 1840, 1875, 2310, 3284, 4524, 5134, 8211, 8583
NsbI TGCGCA 1 cut(s) 1889
NsiI ATGCAT 5 cut(s) 2144, 2668, 3877, 5157, 9196
NspV TTCGAA 3 cut(s) 2785, 6378, 8761
OliI CACNNNNGTG 3 cut(s) 6543, 9261, 9280
PaeI GCATGC 7 cut(s) 2027, 3879, 5227, 5728, 6923, 8144, 9198
PaeR7I CTCGAG 1 cut(s) 5280
PagI TCATGA 3 cut(s) 919, 3262, 6961
PceI AGGCCT 1 cut(s) 8738
PciI ACATGT 4 cut(s) 1465, 5441, 6599, 7470
PciSI GCTCTTC 2 cut(s) 3289, 5755
PcsI WCGNNNNNNNCGW 1 cut(s) 3421
PctI GAATGC 4 cut(s) 3998, 6374, 8446, 8769
PdiI GCCGGC 1 cut(s) 2423
PdmI GAANNNNTTC 7 cut(s) 210, 915, 3563, 4578, 6238, 7957, 8001
Pfl23II CGTACG 1 cut(s) 3741
PflFI GACNNNGTC 1 cut(s) 991
PflMI CCANNNNNTGG 1 cut(s) 1223
PfoI TCCNGGA 4 cut(s) 1758, 3909, 5866, 6144
PinAI ACCGGT 1 cut(s) 2713
Ple19I CGATCG 1 cut(s) 2374
Ppu21I YACGTR 1 cut(s) 6419
PpuMI RGGWCCY 6 cut(s) 2398, 2682, 4964, 8063, 8644, 9233
PscI ACATGT 4 cut(s) 1465, 5441, 6599, 7470
PshAI GACNNNNGTC 1 cut(s) 1212
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 2 cut(s) 5287, 5380
Psp5II RGGWCCY 6 cut(s) 2398, 2682, 4964, 8063, 8644, 9233
PspEI GGTNACC 1 cut(s) 2310
PspFI CCCAGC 4 cut(s) 3521, 6828, 6899, 7728
PspLI CGTACG 1 cut(s) 3741
PspOMI GGGCCC 1 cut(s) 55
PspPPI RGGWCCY 6 cut(s) 2398, 2682, 4964, 8063, 8644, 9233
PspXI VCTCGAGB 1 cut(s) 5280
PstI CTGCAG 6 cut(s) 1040, 2430, 5307, 6676, 7510, 8434
PstNI CAGNNNCTG 4 cut(s) 233, 1633, 6185, 8429
PsyI GACNNNGTC 1 cut(s) 991
PvuI CGATCG 1 cut(s) 2374
PvuII CAGCTG 7 cut(s) 6056, 6173, 6290, 6828, 7900, 8426, 9154
RseI CAYNNNNRTG 8 cut(s) 408, 3836, 4335, 5882, 6543, 6985, 9261, 9280
SacI GAGCTC 2 cut(s) 5287, 5380
SacII CCGCGG 1 cut(s) 8467
SalI GTCGAC 1 cut(s) 6502
SapI GCTCTTC 2 cut(s) 3289, 5755
ScaI AGTACT 1 cut(s) 7371
SexAI ACCWGGT 2 cut(s) 779, 7260
Sfr274I CTCGAG 1 cut(s) 5280
Sfr303I CCGCGG 1 cut(s) 8467
SfuI TTCGAA 3 cut(s) 2785, 6378, 8761
SgrAI CRCCGGYG 1 cut(s) 2713
SgrBI CCGCGG 1 cut(s) 8467
SlaI CTCGAG 1 cut(s) 5280
SmiMI CAYNNNNRTG 8 cut(s) 408, 3836, 4335, 5882, 6543, 6985, 9261, 9280
SmlI CTYRAG 9 cut(s) 601, 1048, 1364, 3386, 3863, 5129, 5280, 5560, 6914
SmoI CTYRAG 9 cut(s) 601, 1048, 1364, 3386, 3863, 5129, 5280, 5560, 6914
SphI GCATGC 7 cut(s) 2027, 3879, 5227, 5728, 6923, 8144, 9198
SseBI AGGCCT 1 cut(s) 8738
SspI AATATT 8 cut(s) 199, 625, 1222, 1595, 4172, 4261, 5838, 6219
SstI GAGCTC 2 cut(s) 5287, 5380
StuI AGGCCT 1 cut(s) 8738
StyI CCWWGG 3 cut(s) 2306, 2315, 6751
TaiI ACGT 6 cut(s) 3291, 4888, 5692, 5946, 6421, 7801
TatI WGTACW 9 cut(s) 1147, 2512, 4303, 4700, 5581, 7319, 7369, 7693, 8257
TauI GCSGC 5 cut(s) 2534, 4433, 6142, 6694, 7628
TseFI GTSAC 8 cut(s) 1840, 1875, 2310, 3284, 4524, 5134, 8211, 8583
Tsp45I GTSAC 8 cut(s) 1840, 1875, 2310, 3284, 4524, 5134, 8211, 8583
TspGWI ACGGA 4 cut(s) 3272, 4544, 5269, 7121
Tth111I GACNNNGTC 1 cut(s) 991
Van91I CCANNNNNTGG 1 cut(s) 1223
Vha464I CTTAAG 1 cut(s) 3386
VneI GTGCAC 5 cut(s) 4338, 4714, 6420, 6536, 6777
XagI CCTNNNNNAGG 1 cut(s) 5001
XbaI TCTAGA 4 cut(s) 3151, 3902, 6766, 8650
XcmI CCANNNNNNNNNTGG 1 cut(s) 8775
XhoI CTCGAG 1 cut(s) 5280
XmaJI CCTAGG 1 cut(s) 6751
XmiI GTMKAC 2 cut(s) 1026, 6503
XmnI GAANNNNTTC 7 cut(s) 210, 915, 3563, 4578, 6238, 7957, 8001
ZrmI AGTACT 1 cut(s) 7371
Zsp2I ATGCAT 5 cut(s) 2144, 2668, 3877, 5157, 9196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.