phagosome-lysosome fusion involved in apoptotic cell clearance
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G39420 AT4G39420 AT4G39420 AT4G39420 |
| fragaria_vesca | FvH4_1g23050 FvH4_1g23050 |
| malus_domestica | MD15G1330600.v1.1 |
| prunus_persica | Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 |
| pyrus_communis | pycom15g29460 |
| rosa_chinensis | RchiOBHm_Chr2g0117761 |
| rosa_laevigata | RLG00000018366 |
| rosa_multiflora | Rmu_co8468041.1_g000001 Rmu_sc0001617.1_g000039 Rmu_sc0001617.1_g000040 Rmu_sc0004795.1_g000020 |
| rosa_roxburghii | Rroxscaffold_2G00126250 |
| rosa_rugosa | Rorug02G0213800 |
| rosa_samantha | Rh2AG269900 Rh2BG281300 Rh2CG270200 Rh2DG277600 Rh2DG295600 |
| rosa_wichuraiana | Rw2G021310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 396 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 5506, 5933 |
| Acc16I | TGCGCA | 1 cut(s) | 1889 |
| Acc36I | ACCTGC | 4 cut(s) | 4979, 7906, 8137, 8467 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1223 |
| AccBSI | CCGCTC | 1 cut(s) | 7389 |
| AccI | GTMKAC | 1 cut(s) | 6779 |
| AccII | CGCG | 2 cut(s) | 4515, 4517 |
| AccIII | TCCGGA | 2 cut(s) | 4288, 4540 |
| AcoI | YGGCCR | 3 cut(s) | 3345, 5527, 7757 |
| AcyI | GRCGYC | 1 cut(s) | 8016 |
| AfeI | AGCGCT | 1 cut(s) | 2359 |
| AflII | CTTAAG | 2 cut(s) | 3386, 5485 |
| AflIII | ACRYGT | 4 cut(s) | 1465, 3928, 5720, 6875 |
| AgeI | ACCGGT | 1 cut(s) | 2713 |
| AhlI | ACTAGT | 1 cut(s) | 1112 |
| AjiI | CACGTC | 4 cut(s) | 4886, 5174, 5969, 8192 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 5892, 5924, 8511, 8543 |
| AleI | CACNNNNGTG | 1 cut(s) | 6819 |
| Alw21I | GWGCWC | 9 cut(s) | 4109, 4342, 4718, 5566, 5659, 5846, 6700, 6816, 7057 |
| Alw44I | GTGCAC | 5 cut(s) | 4338, 4714, 6696, 6812, 7053 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 233, 1633, 6464 |
| Ama87I | CYCGRG | 2 cut(s) | 5559, 7220 |
| Aor13HI | TCCGGA | 2 cut(s) | 4288, 4540 |
| Aor51HI | AGCGCT | 1 cut(s) | 2359 |
| ApaI | GGGCCC | 1 cut(s) | 59 |
| ApaLI | GTGCAC | 5 cut(s) | 4338, 4714, 6696, 6812, 7053 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3405, 3437 |
| AsiGI | ACCGGT | 1 cut(s) | 2713 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 210, 915, 3563, 3930, 6517, 8350, 8394 |
| AspA2I | CCTAGG | 1 cut(s) | 7027 |
| AspLEI | GCGC | 8 cut(s) | 1890, 2360, 3615, 4517, 5378, 6723, 6742, 8547 |
| AsuC2I | CCSGG | 1 cut(s) | 788 |
| AsuII | TTCGAA | 2 cut(s) | 1607, 2785 |
| AsuNHI | GCTAGC | 2 cut(s) | 5690, 6023 |
| AvaI | CYCGRG | 2 cut(s) | 5559, 7220 |
| AvrII | CCTAGG | 1 cut(s) | 7027 |
| AxyI | CCTNAGG | 1 cut(s) | 3158 |
| BaeGI | GKGCMC | 8 cut(s) | 59, 4342, 4453, 4718, 6700, 6763, 6816, 7057 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4758, 4791 |
| BalI | TGGCCA | 2 cut(s) | 3347, 5529 |
| BanII | GRGCYC | 3 cut(s) | 59, 5566, 5659 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2496, 2528, 5632, 5664 |
| BauI | CACGAG | 4 cut(s) | 1796, 3072, 4385, 5652 |
| BbsI | GAAGAC | 2 cut(s) | 203, 8237 |
| Bbv12I | GWGCWC | 9 cut(s) | 4109, 4342, 4718, 5566, 5659, 5846, 6700, 6816, 7057 |
| BbvCI | CCTCAGC | 1 cut(s) | 6448 |
| BceAI | ACGGC | 3 cut(s) | 3569, 6858, 7772 |
| BciVI | GTATCC | 2 cut(s) | 1820, 1921 |
| BclI | TGATCA | 2 cut(s) | 1846, 3787 |
| BcnI | CCSGG | 1 cut(s) | 788 |
| BcuI | ACTAGT | 1 cut(s) | 1112 |
| BfoI | RGCGCY | 1 cut(s) | 2361 |
| BfrI | CTTAAG | 2 cut(s) | 3386, 5485 |
| BfuAI | ACCTGC | 4 cut(s) | 4979, 7906, 8137, 8467 |
| BfuI | GTATCC | 2 cut(s) | 1820, 1921 |
| BglII | AGATCT | 3 cut(s) | 329, 5768, 7333 |
| BlnI | CCTAGG | 1 cut(s) | 7027 |
| BmcAI | AGTACT | 1 cut(s) | 7764 |
| BmeT110I | CYCGRG | 2 cut(s) | 5559, 7220 |
| BmgBI | CACGTC | 4 cut(s) | 4886, 5174, 5969, 8192 |
| BmrI | ACTGGG | 6 cut(s) | 1899, 3898, 4705, 6092, 7096, 7114 |
| BmtI | GCTAGC | 2 cut(s) | 5694, 6027 |
| BmuI | ACTGGG | 6 cut(s) | 1899, 3898, 4705, 6092, 7096, 7114 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1212 |
| BpiI | GAAGAC | 2 cut(s) | 203, 8237 |
| BpmI | CTGGAG | 8 cut(s) | 4742, 5408, 6168, 7152, 7534, 7949, 7965, 8494 |
| Bpu10I | CCTNAGC | 3 cut(s) | 3202, 4959, 6448 |
| Bpu14I | TTCGAA | 2 cut(s) | 1607, 2785 |
| BpuEI | CTTGAG | 7 cut(s) | 622, 1033, 1413, 3884, 5150, 5860, 7292 |
| BpuMI | CCSGG | 1 cut(s) | 788 |
| BsaAI | YACGTR | 1 cut(s) | 6695 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1831, 4978, 5577 |
| BsaHI | GRCGYC | 1 cut(s) | 8016 |
| BsaI | GGTCTC | 1 cut(s) | 3086 |
| BsaJI | CCNNGG | 7 cut(s) | 2086, 2134, 2306, 2315, 5076, 7027, 7221 |
| BsaWI | WCCGGW | 6 cut(s) | 482, 1096, 1585, 2713, 4288, 4540 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2740, 2770, 3357, 3387, 6321, 6351, 6897, 6927 |
| Bse118I | RCCGGY | 1 cut(s) | 2713 |
| Bse21I | CCTNAGG | 1 cut(s) | 3158 |
| Bse3DI | GCAATG | 9 cut(s) | 511, 1320, 2569, 3350, 4596, 5427, 6204, 7246, 8076 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1831, 4978, 5577 |
| BseAI | TCCGGA | 2 cut(s) | 4288, 4540 |
| BseDI | CCNNGG | 7 cut(s) | 2086, 2134, 2306, 2315, 5076, 7027, 7221 |
| BseJI | GATNNNNATC | 3 cut(s) | 1831, 4978, 5577 |
| BseMI | GCAATG | 9 cut(s) | 511, 1320, 2569, 3350, 4596, 5427, 6204, 7246, 8076 |
| BseRI | GAGGAG | 7 cut(s) | 704, 3455, 4454, 5120, 6427, 7238, 8339 |
| BseSI | GKGCMC | 8 cut(s) | 59, 4342, 4453, 4718, 6700, 6763, 6816, 7057 |
| BseYI | CCCAGC | 3 cut(s) | 3521, 7292, 8121 |
| BsgI | GTGCAG | 3 cut(s) | 922, 5109, 8165 |
| Bsh1236I | CGCG | 2 cut(s) | 4515, 4517 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2374 |
| BshTI | ACCGGT | 1 cut(s) | 2713 |
| BsiEI | CGRYCG | 1 cut(s) | 2374 |
| BsiHKAI | GWGCWC | 9 cut(s) | 4109, 4342, 4718, 5566, 5659, 5846, 6700, 6816, 7057 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5559, 7220 |
| BsiSI | CCGG | 8 cut(s) | 483, 788, 1097, 1479, 1586, 2714, 4289, 4541 |
| BslFI | GGGAC | 8 cut(s) | 269, 332, 645, 2411, 3011, 6080, 7257, 8089 |
| BsmBI | CGTCTC | 2 cut(s) | 3406, 4559 |
| BsmFI | GGGAC | 8 cut(s) | 269, 332, 645, 2411, 3011, 6080, 7257, 8089 |
| BsmI | GAATGC | 1 cut(s) | 3998 |
| Bso31I | GGTCTC | 1 cut(s) | 3086 |
| BsoBI | CYCGRG | 2 cut(s) | 5559, 7220 |
| Bsp119I | TTCGAA | 2 cut(s) | 1607, 2785 |
| Bsp120I | GGGCCC | 1 cut(s) | 55 |
| Bsp13I | TCCGGA | 2 cut(s) | 4288, 4540 |
| Bsp1407I | TGTACA | 1 cut(s) | 1026 |
| Bsp19I | CCATGG | 1 cut(s) | 2315 |
| BspEI | TCCGGA | 2 cut(s) | 4288, 4540 |
| BspFNI | CGCG | 2 cut(s) | 4515, 4517 |
| BspHI | TCATGA | 3 cut(s) | 919, 3262, 7354 |
| BspMAI | CTGCAG | 5 cut(s) | 1040, 2430, 5586, 6952, 7903 |
| BspMI | ACCTGC | 4 cut(s) | 4979, 7906, 8137, 8467 |
| BspOI | GCTAGC | 2 cut(s) | 5694, 6027 |
| BspQI | GCTCTTC | 2 cut(s) | 3289, 6034 |
| BspT104I | TTCGAA | 2 cut(s) | 1607, 2785 |
| BspTI | CTTAAG | 2 cut(s) | 3386, 5485 |
| BspTNI | GGTCTC | 1 cut(s) | 3086 |
| BsrBI | CCGCTC | 1 cut(s) | 7389 |
| BsrDI | GCAATG | 9 cut(s) | 511, 1320, 2569, 3350, 4596, 5427, 6204, 7246, 8076 |
| BsrFI | RCCGGY | 1 cut(s) | 2713 |
| BsrGI | TGTACA | 1 cut(s) | 1026 |
| BssAI | RCCGGY | 1 cut(s) | 2713 |
| BssECI | CCNNGG | 7 cut(s) | 2086, 2134, 2306, 2315, 5076, 7027, 7221 |
| BssNI | GRCGYC | 1 cut(s) | 8016 |
| BssSI | CACGAG | 4 cut(s) | 1796, 3072, 4385, 5652 |
| BssT1I | CCWWGG | 3 cut(s) | 2306, 2315, 7027 |
| Bst2BI | CACGAG | 4 cut(s) | 1796, 3072, 4385, 5652 |
| BstACI | GRCGYC | 1 cut(s) | 8016 |
| BstAFI | CTTAAG | 2 cut(s) | 3386, 5485 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 5183, 5519, 6203 |
| BstAUI | TGTACA | 1 cut(s) | 1026 |
| BstBAI | YACGTR | 1 cut(s) | 6695 |
| BstBI | TTCGAA | 2 cut(s) | 1607, 2785 |
| BstDSI | CCRYGG | 2 cut(s) | 2086, 2315 |
| BstEII | GGTNACC | 1 cut(s) | 2310 |
| BstFNI | CGCG | 2 cut(s) | 4515, 4517 |
| BstH2I | RGCGCY | 1 cut(s) | 2361 |
| BstHHI | GCGC | 8 cut(s) | 1890, 2360, 3615, 4517, 5378, 6723, 6742, 8547 |
| BstMCI | CGRYCG | 1 cut(s) | 2374 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1212 |
| BstPI | GGTNACC | 1 cut(s) | 2310 |
| BstSLI | GKGCMC | 8 cut(s) | 59, 4342, 4453, 4718, 6700, 6763, 6816, 7057 |
| BstUI | CGCG | 2 cut(s) | 4515, 4517 |
| BstV2I | GAAGAC | 2 cut(s) | 203, 8237 |
| BstX2I | RGATCY | 8 cut(s) | 329, 1751, 1893, 3467, 4239, 5768, 6442, 7333 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4813 |
| BstYI | RGATCY | 8 cut(s) | 329, 1751, 1893, 3467, 4239, 5768, 6442, 7333 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3158 |
| BsuI | GTATCC | 2 cut(s) | 1820, 1921 |
| BtgI | CCRYGG | 2 cut(s) | 2086, 2315 |
| BtgZI | GCGATG | 2 cut(s) | 5760, 5777 |
| BtrI | CACGTC | 4 cut(s) | 4886, 5174, 5969, 8192 |
| BtsI | GCAGTG | 2 cut(s) | 2124, 4687 |
| BveI | ACCTGC | 4 cut(s) | 4979, 7906, 8137, 8467 |
| CaiI | CAGNNNCTG | 3 cut(s) | 233, 1633, 6464 |
| CciI | TCATGA | 3 cut(s) | 919, 3262, 7354 |
| CfoI | GCGC | 8 cut(s) | 1890, 2360, 3615, 4517, 5378, 6723, 6742, 8547 |
| Cfr10I | RCCGGY | 1 cut(s) | 2713 |
| CseI | GACGC | 3 cut(s) | 2408, 6450, 8024 |
| CsiI | ACCWGGT | 2 cut(s) | 779, 7653 |
| CspAI | ACCGGT | 1 cut(s) | 2713 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 518, 553, 2596, 2631, 6913, 6948 |
| DraI | TTTAAA | 1 cut(s) | 1495 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 5506, 5933 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 5506, 5933 |
| EaeI | YGGCCR | 3 cut(s) | 3345, 5527, 7757 |
| EciI | GGCGGA | 2 cut(s) | 5723, 6564 |
| Ecl136II | GAGCTC | 2 cut(s) | 5564, 5657 |
| Eco130I | CCWWGG | 3 cut(s) | 2306, 2315, 7027 |
| Eco24I | GRGCYC | 3 cut(s) | 59, 5566, 5659 |
| Eco31I | GGTCTC | 1 cut(s) | 3086 |
| Eco32I | GATATC | 4 cut(s) | 1707, 3498, 5852, 5918 |
| Eco47III | AGCGCT | 1 cut(s) | 2359 |
| Eco53kI | GAGCTC | 2 cut(s) | 5564, 5657 |
| Eco81I | CCTNAGG | 1 cut(s) | 3158 |
| Eco88I | CYCGRG | 2 cut(s) | 5559, 7220 |
| Eco91I | GGTNACC | 1 cut(s) | 2310 |
| EcoICRI | GAGCTC | 2 cut(s) | 5564, 5657 |
| EcoO109I | RGGNCCY | 8 cut(s) | 55, 56, 551, 2398, 2682, 4817, 4964, 8456 |
| EcoO65I | GGTNACC | 1 cut(s) | 2310 |
| EcoRI | GAATTC | 6 cut(s) | 1179, 1720, 3563, 3573, 5675, 6403 |
| EcoRV | GATATC | 4 cut(s) | 1707, 3498, 5852, 5918 |
| EcoT14I | CCWWGG | 3 cut(s) | 2306, 2315, 7027 |
| EcoT22I | ATGCAT | 5 cut(s) | 2144, 2668, 3742, 3877, 5346 |
| EcoT38I | GRGCYC | 3 cut(s) | 59, 5566, 5659 |
| ErhI | CCWWGG | 3 cut(s) | 2306, 2315, 7027 |
| Esp3I | CGTCTC | 2 cut(s) | 3406, 4559 |
| FaqI | GGGAC | 8 cut(s) | 269, 332, 645, 2411, 3011, 6080, 7257, 8089 |
| FauI | CCCGC | 1 cut(s) | 8368 |
| FauNDI | CATATG | 2 cut(s) | 2668, 4112 |
| FbaI | TGATCA | 2 cut(s) | 1846, 3787 |
| FblI | GTMKAC | 1 cut(s) | 6779 |
| FriOI | GRGCYC | 3 cut(s) | 59, 5566, 5659 |
| FspI | TGCGCA | 1 cut(s) | 1889 |
| GlaI | GCGC | 8 cut(s) | 1889, 2359, 3614, 4516, 5377, 6722, 6741, 8546 |
| GsaI | CCCAGC | 3 cut(s) | 3525, 7296, 8125 |
| GsuI | CTGGAG | 8 cut(s) | 4742, 5408, 6168, 7152, 7534, 7949, 7965, 8494 |
| HaeII | RGCGCY | 1 cut(s) | 2361 |
| HapII | CCGG | 8 cut(s) | 483, 788, 1097, 1479, 1586, 2714, 4289, 4541 |
| HgaI | GACGC | 3 cut(s) | 2408, 6450, 8024 |
| HhaI | GCGC | 8 cut(s) | 1890, 2360, 3615, 4517, 5378, 6723, 6742, 8547 |
| Hin1I | GRCGYC | 1 cut(s) | 8016 |
| Hin6I | GCGC | 8 cut(s) | 1888, 2358, 3613, 4515, 5376, 6721, 6740, 8545 |
| HinP1I | GCGC | 8 cut(s) | 1888, 2358, 3613, 4515, 5376, 6721, 6740, 8545 |
| HincII | GTYRAC | 7 cut(s) | 361, 2248, 2869, 3637, 6780, 8043, 8221 |
| HindII | GTYRAC | 7 cut(s) | 361, 2248, 2869, 3637, 6780, 8043, 8221 |
| HindIII | AAGCTT | 4 cut(s) | 1202, 1853, 6066, 8027 |
| HpaI | GTTAAC | 1 cut(s) | 361 |
| HpaII | CCGG | 8 cut(s) | 483, 788, 1097, 1479, 1586, 2714, 4289, 4541 |
| Hpy99I | CGWCG | 3 cut(s) | 2424, 2623, 7758 |
| HpyCH4IV | ACGT | 8 cut(s) | 3288, 3696, 4885, 5173, 5968, 6694, 8089, 8191 |
| HpySE526I | ACGT | 8 cut(s) | 3288, 3696, 4885, 5173, 5968, 6694, 8089, 8191 |
| Hsp92I | GRCGYC | 1 cut(s) | 8016 |
| HspAI | GCGC | 8 cut(s) | 1888, 2358, 3613, 4515, 5376, 6721, 6740, 8545 |
| Kpn2I | TCCGGA | 2 cut(s) | 4288, 4540 |
| Ksp22I | TGATCA | 2 cut(s) | 1846, 3787 |
| KspAI | GTTAAC | 1 cut(s) | 361 |
| LguI | GCTCTTC | 2 cut(s) | 3289, 6034 |
| MabI | ACCWGGT | 2 cut(s) | 779, 7653 |
| MaeII | ACGT | 8 cut(s) | 3288, 3696, 4885, 5173, 5968, 6694, 8089, 8191 |
| MbiI | CCGCTC | 1 cut(s) | 7389 |
| MfeI | CAATTG | 2 cut(s) | 2904, 8277 |
| MflI | RGATCY | 8 cut(s) | 329, 1751, 1893, 3467, 4239, 5768, 6442, 7333 |
| MlsI | TGGCCA | 2 cut(s) | 3347, 5529 |
| MluNI | TGGCCA | 2 cut(s) | 3347, 5529 |
| MlyI | GAGTC | 9 cut(s) | 1356, 1856, 3900, 5315, 5558, 6775, 6785, 7763, 8167 |
| MmeI | TCCRAC | 9 cut(s) | 906, 991, 3116, 3271, 3922, 6307, 7098, 7718, 7873 |
| Mox20I | TGGCCA | 2 cut(s) | 3347, 5529 |
| Mph1103I | ATGCAT | 5 cut(s) | 2144, 2668, 3742, 3877, 5346 |
| MroI | TCCGGA | 2 cut(s) | 4288, 4540 |
| MroXI | GAANNNNTTC | 7 cut(s) | 210, 915, 3563, 3930, 6517, 8350, 8394 |
| MscI | TGGCCA | 2 cut(s) | 3347, 5529 |
| MslI | CAYNNNNRTG | 7 cut(s) | 408, 3836, 4335, 5535, 6161, 6819, 7378 |
| Msp20I | TGGCCA | 2 cut(s) | 3347, 5529 |
| MspA1I | CMGCKG | 4 cut(s) | 6335, 6452, 6967, 8293 |
| MspCI | CTTAAG | 2 cut(s) | 3386, 5485 |
| MspI | CCGG | 8 cut(s) | 483, 788, 1097, 1479, 1586, 2714, 4289, 4541 |
| MunI | CAATTG | 2 cut(s) | 2904, 8277 |
| Mva1269I | GAATGC | 1 cut(s) | 3998 |
| MvnI | CGCG | 2 cut(s) | 4515, 4517 |
| NciI | CCSGG | 1 cut(s) | 788 |
| NcoI | CCATGG | 1 cut(s) | 2315 |
| NdeI | CATATG | 2 cut(s) | 2668, 4112 |
| NheI | GCTAGC | 2 cut(s) | 5690, 6023 |
| NmeAIII | GCCGAG | 1 cut(s) | 3381 |
| NmuCI | GTSAC | 5 cut(s) | 1875, 2310, 3284, 4524, 5468 |
| NsbI | TGCGCA | 1 cut(s) | 1889 |
| NsiI | ATGCAT | 5 cut(s) | 2144, 2668, 3742, 3877, 5346 |
| NspV | TTCGAA | 2 cut(s) | 1607, 2785 |
| OliI | CACNNNNGTG | 1 cut(s) | 6819 |
| PaeI | GCATGC | 6 cut(s) | 2027, 3879, 5416, 6007, 7316, 8537 |
| PaeR7I | CTCGAG | 1 cut(s) | 5559 |
| PagI | TCATGA | 3 cut(s) | 919, 3262, 7354 |
| PciI | ACATGT | 4 cut(s) | 1465, 3928, 5720, 6875 |
| PciSI | GCTCTTC | 2 cut(s) | 3289, 6034 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3421 |
| PctI | GAATGC | 1 cut(s) | 3998 |
| PdmI | GAANNNNTTC | 7 cut(s) | 210, 915, 3563, 3930, 6517, 8350, 8394 |
| PflFI | GACNNNGTC | 1 cut(s) | 991 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1223 |
| PfoI | TCCNGGA | 4 cut(s) | 786, 1758, 3909, 6145 |
| PinAI | ACCGGT | 1 cut(s) | 2713 |
| Ple19I | CGATCG | 1 cut(s) | 2374 |
| PleI | GAGTC | 9 cut(s) | 1356, 1856, 3900, 5314, 5557, 6775, 6784, 7763, 8166 |
| PpsI | GAGTC | 9 cut(s) | 1356, 1856, 3900, 5314, 5557, 6775, 6784, 7763, 8166 |
| Ppu21I | YACGTR | 1 cut(s) | 6695 |
| PpuMI | RGGWCCY | 4 cut(s) | 2398, 2682, 4964, 8456 |
| PscI | ACATGT | 4 cut(s) | 1465, 3928, 5720, 6875 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1212 |
| PsiI | TTATAA | 1 cut(s) | 396 |
| Psp124BI | GAGCTC | 2 cut(s) | 5566, 5659 |
| Psp5II | RGGWCCY | 4 cut(s) | 2398, 2682, 4964, 8456 |
| PspEI | GGTNACC | 1 cut(s) | 2310 |
| PspFI | CCCAGC | 3 cut(s) | 3521, 7292, 8121 |
| PspOMI | GGGCCC | 1 cut(s) | 55 |
| PspPPI | RGGWCCY | 4 cut(s) | 2398, 2682, 4964, 8456 |
| PspXI | VCTCGAGB | 1 cut(s) | 5559 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5145, 5177 |
| PstI | CTGCAG | 5 cut(s) | 1040, 2430, 5586, 6952, 7903 |
| PstNI | CAGNNNCTG | 3 cut(s) | 233, 1633, 6464 |
| PsuI | RGATCY | 8 cut(s) | 329, 1751, 1893, 3467, 4239, 5768, 6442, 7333 |
| PsyI | GACNNNGTC | 1 cut(s) | 991 |
| PvuI | CGATCG | 1 cut(s) | 2374 |
| PvuII | CAGCTG | 3 cut(s) | 6335, 6452, 8293 |
| RseI | CAYNNNNRTG | 7 cut(s) | 408, 3836, 4335, 5535, 6161, 6819, 7378 |
| SacI | GAGCTC | 2 cut(s) | 5566, 5659 |
| SalI | GTCGAC | 1 cut(s) | 6778 |
| SapI | GCTCTTC | 2 cut(s) | 3289, 6034 |
| ScaI | AGTACT | 1 cut(s) | 7764 |
| SchI | GAGTC | 9 cut(s) | 1356, 1856, 3900, 5315, 5558, 6775, 6785, 7763, 8167 |
| SexAI | ACCWGGT | 2 cut(s) | 779, 7653 |
| Sfr274I | CTCGAG | 1 cut(s) | 5559 |
| SfuI | TTCGAA | 2 cut(s) | 1607, 2785 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2713 |
| SlaI | CTCGAG | 1 cut(s) | 5559 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 408, 3836, 4335, 5535, 6161, 6819, 7378 |
| SpeI | ACTAGT | 1 cut(s) | 1112 |
| SphI | GCATGC | 6 cut(s) | 2027, 3879, 5416, 6007, 7316, 8537 |
| SstI | GAGCTC | 2 cut(s) | 5566, 5659 |
| StyI | CCWWGG | 3 cut(s) | 2306, 2315, 7027 |
| TaiI | ACGT | 8 cut(s) | 3291, 3699, 4888, 5176, 5971, 6697, 8092, 8194 |
| TaqII | GACCGA | 1 cut(s) | 4264 |
| TatI | WGTACW | 8 cut(s) | 1026, 1147, 2512, 4583, 4700, 5860, 7712, 7762 |
| TauI | GCSGC | 5 cut(s) | 2534, 4433, 6421, 6970, 8021 |
| TseFI | GTSAC | 5 cut(s) | 1875, 2310, 3284, 4524, 5468 |
| Tsp45I | GTSAC | 5 cut(s) | 1875, 2310, 3284, 4524, 5468 |
| TspGWI | ACGGA | 6 cut(s) | 3272, 4544, 4583, 5458, 7514, 7874 |
| Tth111I | GACNNNGTC | 1 cut(s) | 991 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1223 |
| Vha464I | CTTAAG | 2 cut(s) | 3386, 5485 |
| VneI | GTGCAC | 5 cut(s) | 4338, 4714, 6696, 6812, 7053 |
| XbaI | TCTAGA | 3 cut(s) | 3151, 3902, 7042 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5165 |
| XhoI | CTCGAG | 1 cut(s) | 5559 |
| XmaJI | CCTAGG | 1 cut(s) | 7027 |
| XmiI | GTMKAC | 1 cut(s) | 6779 |
| XmnI | GAANNNNTTC | 7 cut(s) | 210, 915, 3563, 3930, 6517, 8350, 8394 |
| ZrmI | AGTACT | 1 cut(s) | 7764 |
| Zsp2I | ATGCAT | 5 cut(s) | 2144, 2668, 3742, 3877, 5346 |