RLG00000018366

phagosome-lysosome fusion involved in apoptotic cell clearance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003216
Physical Location & Seq
Reverse (-)
28835630 .. 28858620
22991 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018366

Sequence Viewer

Length: 9681 bp
ATGGATTTGTCTGTGGGTGATAAAGGACTTGCTATACTTCAGTTGCTCAAATGGGGCCCTTCTCAGCCCCAACTAAACTTGTCGGAATTTCGTGAAGCTTTCATTTCACCTACAAGACAGTTATTATTATTGCTTTCGTATCAGTGTGAGGCTTTATTGTTTCCTCTAATTGCAGGTAGTAATAATTTGGAGGGTAATATTGATGAAAGTCTTCAAAGTCCAGAGACAGAGCCTGGTAGGTCAGATTCAATAAGGGACGATTTGCCATGCACATCTGGATCATTAGGAGATGTTGATAATGATTTGAGTTTTGGAGGGGATAGTTTAAGATCTAAAAGTAACCCTTTTATCGGTGATGTTAATTCTCTGGCTTGGGGCATTTGTGAGGACACTTATAATCAGCACAAGGATGCTTTATTTAGAGAACTTTTGTTTGTGTGTGGCAAGCAAGGTATTATGGTCCATGCTTTTGTTGAATCTACCGGAAATACTGCAACTACCAGCAATGCACGGGAAGGTGGGTATGGGAAAGGGAGGTGGGTTGAGTGGGGGCCTTCTGCTTCTTTAATTGGAAATATGGAGGTGGAAGAACCCACCAGCTTGAGTTCTGAAGCTACTGGAAATATTGAATTTAACAAACCCCATGGAAACAGTGAAAGTCCCCATATTTGTAATGTGGATGGGAATGATGTGTTCTCAAAAAGTGTTGCTTCCAAAAGATGGTTGCAATCTTTTTTGACTAAAGTTGAAAATGTTGAATATAATGGTAAGATATTGACCAGGTTCCCAGAAAAATCATTGTTGCCTAGCTCTGCAAGAGTTGTTTCATTTGGTTTATTTAGTAGTAATTCGCCACTTTTGGACTACCTTTCAAACAATGATTCTGCATCAGATATGGCGTGCGGTCAGGAAACAGTTCATGAGTCAGAGAGTGATAAATCTCTGAAATTAGACATAACTTCATCGGATCCACATTTCAAGTCTGAGACTTTGTCCAATCTTTTGGGTGTTGGAATGAATAGTGTATACAAATGCTGCAGAGTGTTCTCAAGCAATTCACATTACTTCATTGGATTTGTTTTCACACAGGTTGATCCGGTAATTGTCAATACCAGTGATGAAAGTGGAAAAAGCAAGAAGAATAATGTACTGCTTATTGCTAGATTAGACGACATGGGAATTCATTGGGTTTCCTCAGTGAAGCTTGACGAAAGTCCAAATATTGGCTCAGTAGCACAGTGGACAGACTTCCACTTTTCTGATAAACTTCTTGTTTGTCTTAATGCTTGTGGGCTAATTGTGTTTTATGCAGCAATGTCAGGTGAGTATGTTGCACATATAGATATTTTACAGACTTTAGGACTCAAGCCTGAGTTGCATTTGCAGAAGCAGGAAGCAGTTTCCTCAGGTTATGATAAGCATATTAGTCAAGTTGATGACATTCAGAACAAATCAGTTTTGCAACATGTTGATTATTCTGGCAGGAGACTGTTTAAAAGGTTGATTTCTGCTTCCCATACCTCTCTAGTAGCTGCTATTGATGATTATGGTGTAATATATGTGGTTTCTGCTGGTGAATATCTACCGGACAAATATTATACAAATGCGAAACTACTTCCACATATTCAGCATCTGGAACTTGGTATGTTGGCTGGTTGGGAGGTTGGTGGTTCTGATATAAGCCACCAGAGGGTATATTCTGACATATCTGGTTTGTGGAATTCTATGATTCCATCCATGATGAAAGGAAGATCCTTCCTGGATGGCTTTGGGAAACAGGTGCTTCAGGGAAACCATGAGTTATACCTCAAACAAGAAGGGATTGGATACAGATCAGAAGTCACTGATCAGAAGCTTGATGACTCTCACAGAAAGTCACACCTTATGCGCAGGATCTTTGTTCCCAGTTACAGATTTAGTGAGAAGGATACTATCTGTTTTTCTCCATTGGGAATTACTCAGCTTATGAAGAACCAAAATTTGCACGATCAGAGGGGTTCTCAAATTGTTCATCTCAATCTGCATGCAGAATCAGCAGTTCGTGATGACAGCTTTTTGAATACTGGTTGTAAAAAGGTTTATCTCCATGGGAAAGAAGAATCCTTTATTGATGAGGCAGTGGGTTGCACATTCCAGGGATGCATTTATTTGGTTACAGTAAGTGGACTTTCGGTGGTGCTTCCCTCTATAGCAGTTTCATCAAATTTTCTTCCCGTAGAAGTTATTGGATGTCGGCAGTTGTGTGTCAACTCAGGCATTGGTTATCAAGTGAAAGATATAAGGGAAGCTAAAGAATCTAAACAGCCTTGGTCACCATGGAATGTTGAAATTATGGACAGAGTTATCCTATATGAAAGCGCTGAAGAAGCCGATCGCTTATGCTTGGAGAACGGTTGGGACCTGAAAATATCTCGGATGCGTCGGCTGCAGTTGGCACTGGATTACTTGAAATTTGATGAGATAGAGCGATCATTAGAAAACCTTGTGGGTGTCAATTTGGCAGAAGAGGGTGTACTGAGATTGCTATTTGCGGCTGTTTATCTGATGCTTCGTAAAGTTGGCAATGATAATGAGGTTTCTGCTGCATCAAGGCTTCTTGCATTAGCCACTTTTTTTGCGACGAAAATGATTCGCAAGTATTGGTTGTTAGAACATAGGAAAGATGCATATGAATCTGGTAGGACCCAAATTCTCTCTCTTCCACCAGTTTCACCGGTGAAGGAAGAAGATGAAATGGCAAATTCAAGGAGGCTTAGTGAGATGGCTCACTTTTTGGAGATAATTCGAAATCTGCAATCTCGACTTGGTTCCAAGTATAAGAGGCCAGGCCAAGAATCGGTGGATAGTGGGGAAGCATCAAGATTGGTTGACACTGATTTATTGCAGAACGAATCTCAGCTATCAATTGTATCTGTGGACACTATATCTTTGGAGACATCAAAACAGCATGAAGTTTCTTTCCCGGTATCGACATCAGGATTTAACTATACTGATAATCTTGCTTTGACACCTGTGGATTCTAAAGTCCCTTTGGACCCAGAGGATTTAAGTGAAGTATCTGCTCTTGTGCCACGAGGAGGTCTCTTAGAGAAGAAAATTCTTCCCTTAGAGAATCCCAAAGAGATGATTGCTCGTTGGAAGATAGATAATCTAGACCTTAGGGCTGTAGTCAGTGATGCTTTACTCTCTGGTCGTCTGCCCTTAGCAGTTCTTCAACTACATCTTCACCGTTCAAGAGATTCATTTTCTGGAAAGGAGCCTCATGATACTTTCACTGAAGTTCGTGACGTTGGAAGAGCTATTGCTTATGACCTATTTTTGAAGGGTGAATCTGGACTTGCTGTGGCCACATTGCAAAGGCTAGGAGAGGATGTAGAAACCAGCCTTAAGCAGTTATTATTCGGCACGGTGAGACGATCTCTTCGTGTGCAAATCACTGAGGAGATGAATAAATATGGTTATCTGGGATCGTATGAGTGGAAGATATTGGAGAGGATATCACTTATTGAGAGGCTATACCCCAGCAGTAGTTTTTGGAAAACGCTTCATGGACGGCAGAAAGAATTCACTCGAATTCCAGCAAGTTCCAGTATGCCCAGGAGATATTGTTTGCGCCTACTGGATTCACCTGTAGTCAACAATTTTACCATCGATTGTGATGAAATTGATGGAGTTGTTTTTGGTTCATGGACAAACGTAAATGAAAATCCTTCTGGTCCTATGGTTGATGAAGATAATGCGTACGCTGGTTACTGGGCTGCTGCTGCTGTATGGTTTAATTTCTATGATCAAAGAACTGTTGATCGAATTGTTTTGGATCAGTCATCTTTCATGGGTGTGCATGTGTTGTGGGAATCACAGCTTGAGTACCATGCATGCCACAATGACTGGGAGGAAGTCTCTAGACTCTTGGACCTTATTCCTGAACATGTTCTAGTTGTTGGAAGCCTCCAAATCAATTTGGATGGGCTACAGCCTGCTTCAACTTTTGAATGCAATAGAGGTTATGAGTATGGTGATTACCTCTGCTCTGTTGAAGAATTGGATGCTGTTTGCATGGATGTACCAGAGATCAAAGTTTTCAGGTTTTCGTGTAATGTTATGTGCTCCATATGGTTAAAGAGGCTGATGGAAGAGAAACTTGCGAGGAAACTAATTTTCTCAAAGGAATATTGGGAAGGCACAGCAGATATACTGCCTCTTCTTGCCCGTTCTGGCTTCATTACTAGCAAGTATGAGATCCCTTCAGAGGATGATAATATTGAGGATATTTCAGTCCTGCAATTTCCGGATGGTGGGACTATACGGGCTTTACATAAACTACTTATTCATCATAGTGCACGGTACAACTTGCCATTCCTTCTGGACCTTTACCTTGACCAGCACGAGTTGGTAGCAGATAGTGATTCAGTTCGTTCACTTCAGGAAGCCGCAGGAGATTGTCAATGGGCACGATGGTTGCTCCTCTCTAGGGTGAAAGGGTGTGAGTATGAAGCATCATTTTCCAATTCTCGCGCGATACTGTCACACAATCTAGTTCCGGATAGTAACCTCCGTGTTCCAGAGATGGATGAAATAATTCGTACTGTTGATGACATTGCAGAAGGAGGGGGAGAACTGGCAGCTCTGGCAACCTTAATGTATGCCTCTGCCCCCTTTCAAAGTTGTCTGAGTAGTGGCAGTGTAAAGAGGCATAGTAGTACATCAGCCCAGTGCACACTGGAGAATCTCAGGCCCACTCTTCAGCGTTTTCCTACACTGTGGCACACATTTGTATCAGCATGTTTCGGGCAAGATACAACTTCCAATCTTGTGGGGCCTAAAGCAAAGAATGGTTTTTCGAATTATTTAACATGGCGTGATGACATATTCTTCTCCTCTGGACGTGATACTTCACTTCTGCAAATGCTTCCATGCTGGTTTCCTAAGGCTGTGCGGAGGTTAATTCAGCTTTATGCTCAGGGTCCTCTTGGATGGCAATCAATAGCAGGTCTGCCTGTGGGAGGAGGTCTGCTGCAAAGAGATATAGATTTTGTCCAAAACACTGATGAGGATGTAGAAATCAGCGCACTCTCCTGGGAAGCAACTATCCAAAAACACATTGAGGAGGAACTCTACAATTCTGCACTTGAGGGAAATGCACTTGGGCTTGAACACCATTTACATCGTGGACGTGCATTAGCTGCTTTTAATCATTTTCTTGGTTTTAGAGTTCAAAAATTGAAATCAGAAGGAAAAGGACAAATACAAGCAAATGTTCAAGCAGATGTTCAGACACTTCTTGGACCTATAACAGAAAGTGAAGAGTCTCTTCTTTCATCAGTCATGCCACTTGCAATTATGCATTTTGAGGATTCTGTGCTGGTGGCTTCATGCGCTTTTCTACTGGAGCTTTCCGGATTTTCTGCCAGCATGCTTCGCATAGACATTGCTGCCCTGAAACGGATGTCTTACTTTTACAAATCTAGTGAAAATATTGACAACTTAAGGAAACTTTCGACAAAAGGGTCTGCATTTCATGCAGTTGGCCATGAAAGTGATATAATGGAGTCTCTGGCTCGAGCTCTAGCCGATGAGTATCTGCAGCAGGATAGTGCAAGCATGAGTAAGCAAAAGGGTACTCCAAGTTTAGCTGCTCGTAAACAACCTTCACGAGCTCTCATGCTTTTCTTAGAATTCTTGGAGAAGGCTAGCCTTCCTCCAATGGTGGATGGGAAAACATGTGGGTCTTGGCTGTTGAGTGGCGATGGTGATGGAATCGAGTTGAGATCTCAACAGAAAGCTGCAAGCCATCGCTGGAACTTAGTTACAATTTTCTGCCAGATGCACCACCTTCCCTTGAGCACAAGATATCTTTCTGTACTGGCAAGAGACAATGATTGGGTTGGCTTTTTGTCAGAAGCTCAGATTGGTGGATATCCTTTTGACACAGTGGTCCAAGTGGCGTCAAAGGACTTCAGTGATCCACGTCTCAAAATTCATATTTCAACAGTTCTGAAAGGCATGCAGTCAAGAAGAAAAGCTAGCTCTTCAACAAATACAGATACTATGGAAAAAAGGAGTGAAGCTTCCTTTACCAATGAAAGCATTTGTGTCCCAGTTGAGCTTTTTAGAATATTAGCAGAATGTGAAAAGCAGAAAAATCCTGGAGAGGCCATTTTGATGAAAGCAAAGGAGTTGTCCTGGTCAATTTTGGCAATGATTGCATCATGCTTTTCAGACGTGTCTCCAATATCTTGCCTAACAGTCTGGCTGGAAATAACTGCTGCAAGGGAAACTTCATCTATCAAGGTGAATGATATTGCTTCCAGAATTGCAAATAATGTTGGAGCAGCTGTGGAAGCTACTAATGCTCTGCAAGCAGGAGGGAGAAAATCTCTTACATTTCATTACAATAGGCAGAATTCAAAGAGGAGGCGGCTCCTGGAACCCAACTCAGGAGATCCCTCAGCTGCTACAGCGTCTGAAACTTTGGATTCTCCTGTGGGTGCAAAAATATTTGATAACCAGCGAACTATTTCTGAAGGCGAAAGAAATATAAAACTTGGCGGAAATATGAATGTTTCAGCTGATTCTGATGAAGTGTCTGTTTCACTGTCCAAGATGGTTTCAGTGCTTTGTGAGCAACATCTGTTCCTACCTTTGTTAAGGGCATTCGAAATGTTCCTTCCTTCATGTTCTCTCGTACCTTTCATACGTGCACTTCAGGCATTTTCACAAATGCGCCTTTCTGAAGCATCAGCGCATTTAGGTTCCTTTTCTGCTCGAATTAAAGAAGAGTCGACTCGCTTACAGGCAAATGTAGGAAGAGATGTGCACATTGGTGCATCATGGATAAGCTCTACGGCTATTAAAGCTGCGGATGCTATGCTTTTGACATGTCCATCTCCTTATGAAAAGAGATGCTTACTAAAACTCCTTGCTGCCACTGATTTTGGTGATGGAGGCTCTGCAGCTACTCATTACCAGCGGCTTCATTGGAAAATCAATTTAGCGGAGCCACTATTACGCAAGGATGATAATTTACACCTAGGGAATGAAACTCTAGATGATGGTGCACTTGCAACAGCATTGGAAAGTAATAGACACTGGGAGCAAGCACGCAGCTGGGCGAGACAGTTGGAGGCCAGTGCTGGAGTTTGGAAATCTGCTGTTCATCATGTGACTGAAACTCAGGCTGAATCTATGGTAGCTGAGTGGAAGGAATTTCTTTGGGATGTTCCCGAGGAGAGAATCGCTTTATGGGGGCATTGCCAAACCCTCTTCATCAGATATTCCTTCCCTGCTTTACAGGCTGGGCTATTTTTCCTCAAGCATGCAGAAGCTCTGGAAAAAGATGTTCCAGCTAGGGAGCTTCATGAGCTGTTACTGCTTTCACTACAATGGTTGAGCGGAATGATTACTCTGTCCAATCCAGTTTATCCACTTCATCTGATTCGGGAAATCGAGACTAGAGTATGGCTCTTGGCGGTAGAATCAGAGGCACAAGGTAAGAGTGAAGGAGACTTCAATCTAAGCAGTTCCATCCGTGATCCTATTCACAAAAATAGCTCTAGTATTATTGACAGAACAGCAAGTATCATAACAAAAATGGACATTCATGTTGGTACATTTAAGAACAGAACTGTAGAGAAACATGATGCAAGGGAAAATAACCAGGTGTATCACAAGAACCAAGTATTAGATGTTAGCTTTCCAACCACAATAGCAGGGAGTACAAAGACTAAGCGAAGGGCAAAAGGCTATGTGCCATTACGACGGCCAGTACTAGACTCGCCAGAAAAAAGCGGTGATCTTGATGAGGGTTCTAATTCTCTCAATGTTAGATATGAATTGCAGTCTCAGGATGAAAACTCAAAAACGGACATGTCCTTTTCACGGTGGGAGGAAAGGGTTGGACCTGCAGAGCTGGAAAGGGCTGTTCTTTCTTTATTAGAATTTGGACAAATAGCTGCTGCAAAGCAACTCCAGCATAAGCTGTCTCCAGTAAAAGTACCATCTGAAATTTTACTTGTGGATGCCGCACTGAAGCTTGCAGCTATGTCAACTCCAAGTAAAAAAGTATCTATAGCAATGCTTGATGAAGAAGTACGTTCAGTTATTCAGTCCCACCATATTCTAACCCAGCAACATGAAGTTGATACAGTGCAGGTTTTGGAGAGTCTAGCAACCATTTTTACTGAAGGTAGCGGACGTGGACTATGCAAGAGGATAATAGCAGTCAACAAAGCAGCAAGCATGTTAGGTCTTCCATTTTCGGAGGCATTTGTTAAGCAGCCAATTGAATTACTACAGCTGCTTTCCCTTAAAGCACAAGAATCATTTGAGGAGGCACATCTCCTTGTCAGAACTCATTCAATGCCCGCAGCCAGTATTGCTCAGATTCTTTCCGAATCCTTTCTAAAGGGCTTATTGGCTGCTCATCGTGGGGGATATATGGATTCTCAAAAAGAAGAAGGACCTGCTCCCTTGCTCTGGAGGTTTTCAGACTTCTTAAAGTGGGCAGAGCTTTGTCCTTCTGAACAAGAAATTGGGCATGCACTAATGCGCTTGGTTATTACTGGACAAGAAATACCACATGCCTGCGAGGTTGAGCTTCTAATTTTGTCACACCACTTCTACAAATTATCATCTTGCCTTGATGGAGTTGATGTACTTGTAGCCCTTGCAGCTACTAGAGTTGAAGCTTATGTGTCTGAGGGTGATTTTTCATGTTTGGCTCGTCTGATAACTGGAGTAGGAAACTTCCACGCCCTGAATTTCATTCTCGGAATTCTTATTGAAAATGGCCAACTGGATCTCCTTCTTCAGAAGTATTCAGCTGCTGCAGATGCGAATGCTGGCACTGCTGAGGCCGTCCGCGGATTTCGGATGGCTGTTCTGACATCATTGAAGCATTTTAATCCCAATGACCTTGATGCTTTTGCTATGGTCTATAATCACTTTGACATGAAACATGAAACGGCTGCTCTTTTGGAGTCACGAGCAGAGCAGTCATCAGAACAGTGGTTCTGTCGTTATGACAAGGATCAGAATGAGGACCTTCTAGACTCTATGCGTTATTACATTGAAGCTGCTGAAGTTCACAAATCCATTGATGCTGGCAACAAAACACGCAGAGCATGTGCTCAGGCCTCCCTCTTATCTCTTCAGATTCGAATGCCAGATTTCCACTGGCTGTACCGATCCGAAACCAATGCCAGGCGTGCCCTAGTTGAGCAGTCTCGTTTCCAGGAGGCCCTCATTGTTGCTGAAGCCTATGGTCTTAACCAGCCAAGTGAGTGGGCTTTGGTACTTTGGAACCAGATGCTCAAACCAGAAGTTCTGGAAGATTTTGTGGCTGAATTTGTGGCTGTTCTTCCTCTCCAGCCCTCAATGCTTGCTGATCTAGCAAAGTTTTATAGGGCCGAGGTGGCAGCGAGAGGGGACCAGTCCCAGTTCTCAGTTTGGTTAACTGGGGGAGGGTTGCCAGCAGAATGGGCAAAATATCTGGGGAGGTCGTTTCGATGCTTGTTGAAAAGGACTAGAGATTTGAAGTTGAGGTTGCAGCTGGCTACTGTGGCAACTGGTTTTGGAGATGTTATTGATGCATGCACGAAGGCGTTAGATAGGGTGCCTGAGAATGTAGGACCTCTTGTCCTGAGGAAAGGCCACGGTGGTGCTTATCTACCACTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spatacsin_C

Protein Analysis

3227

Amino Acids

359.71

Weight (kDa)

5.62

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spatacsin_C PF14649 2844 - 3135 8.6e-73 Spatacsin C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AasI GACNNNNNNGTC 2 cut(s) 5506, 5933
Acc16I TGCGCA 1 cut(s) 1889
Acc36I ACCTGC 5 cut(s) 164, 4979, 7909, 8140, 8470
AccB1I GGYRCC 1 cut(s) 9613
AccB7I CCANNNNNTGG 2 cut(s) 720, 1223
AccBSI CCGCTC 1 cut(s) 7392
AccI GTMKAC 2 cut(s) 1026, 6782
AccII CGCG 3 cut(s) 4515, 4517, 8862
AccIII TCCGGA 3 cut(s) 4288, 4540, 5396
AcoI YGGCCR 4 cut(s) 3345, 5527, 7760, 8788
AcyI GRCGYC 1 cut(s) 5945
AfeI AGCGCT 1 cut(s) 2359
AflII CTTAAG 2 cut(s) 3386, 5485
AflIII ACRYGT 6 cut(s) 1465, 3928, 5720, 6222, 6878, 7866
AgeI ACCGGT 1 cut(s) 2713
AhdI GACNNNNNGTC 1 cut(s) 9635
AjiI CACGTC 5 cut(s) 4886, 5174, 5969, 6223, 8195
AjuI GAANNNNNNNTTGG 4 cut(s) 5892, 5924, 8514, 8546
AleI CACNNNNGTG 3 cut(s) 6822, 9657, 9676
Alw44I GTGCAC 5 cut(s) 4338, 4714, 6699, 6815, 7056
AlwNI CAGNNNCTG 4 cut(s) 233, 1633, 6464, 8825
Ama87I CYCGRG 2 cut(s) 5559, 7223
Aor13HI TCCGGA 3 cut(s) 4288, 4540, 5396
Aor51HI AGCGCT 1 cut(s) 2359
ApaI GGGCCC 1 cut(s) 59
ApaLI GTGCAC 5 cut(s) 4338, 4714, 6699, 6815, 7056
ArsI GACNNNNNNTTYG 6 cut(s) 3405, 3437, 6164, 6196, 9514, 9546
AsiGI ACCGGT 1 cut(s) 2713
Asp700I GAANNNNTTC 8 cut(s) 210, 915, 3563, 3930, 4578, 6517, 8353, 8397
AspA2I CCTAGG 1 cut(s) 7030
AspLEI GCGC 9 cut(s) 1890, 2360, 3615, 4517, 5069, 5378, 6726, 6745, 8550
AsuC2I CCSGG 1 cut(s) 2963
AsuII TTCGAA 4 cut(s) 2785, 4841, 6657, 9157
AsuNHI GCTAGC 2 cut(s) 5690, 6023
AvaI CYCGRG 2 cut(s) 5559, 7223
AvrII CCTAGG 1 cut(s) 7030
AxyI CCTNAGG 4 cut(s) 1405, 3158, 4926, 9641
BaeGI GKGCMC 8 cut(s) 59, 4342, 4453, 4718, 6703, 6819, 7060, 9211
BaeI ACNNNNGTAYC 2 cut(s) 4758, 4791
BalI TGGCCA 3 cut(s) 3347, 5529, 8790
BamHI GGATCC 1 cut(s) 967
BanI GGYRCC 1 cut(s) 9613
BanII GRGCYC 3 cut(s) 59, 5566, 5659
BarI GAAGNNNNNNTAC 4 cut(s) 2496, 2528, 5632, 5664
BauI CACGAG 4 cut(s) 3072, 4385, 5652, 8982
BbsI GAAGAC 2 cut(s) 203, 8240
BbvCI CCTCAGC 2 cut(s) 6448, 8850
BceAI ACGGC 5 cut(s) 3569, 6861, 7775, 8840, 8979
BcgI CGANNNNNNTGC 2 cut(s) 9179, 9213
BciVI GTATCC 2 cut(s) 1820, 1921
BclI TGATCA 2 cut(s) 1846, 3787
BcnI CCSGG 1 cut(s) 2963
BfoI RGCGCY 1 cut(s) 2361
BfrI CTTAAG 2 cut(s) 3386, 5485
BfuAI ACCTGC 5 cut(s) 164, 4979, 7909, 8140, 8470
BfuI GTATCC 2 cut(s) 1820, 1921
BglI GCCNNNNNGGC 1 cut(s) 9413
BglII AGATCT 2 cut(s) 329, 5768
BlnI CCTAGG 1 cut(s) 7030
BmcAI AGTACT 1 cut(s) 7767
BmeRI GACNNNNNGTC 1 cut(s) 9635
BmeT110I CYCGRG 2 cut(s) 5559, 7223
BmgBI CACGTC 5 cut(s) 4886, 5174, 5969, 6223, 8195
BmrI ACTGGG 8 cut(s) 1899, 3763, 3898, 4705, 6092, 7099, 9430, 9465
BmtI GCTAGC 2 cut(s) 5694, 6027
BmuI ACTGGG 8 cut(s) 1899, 3763, 3898, 4705, 6092, 7099, 9430, 9465
BoxI GACNNNNGTC 1 cut(s) 1212
BpiI GAAGAC 2 cut(s) 203, 8240
BpmI CTGGAG 9 cut(s) 4742, 5408, 6168, 7155, 7952, 7968, 8497, 8754, 9350
Bpu10I CCTNAGC 5 cut(s) 3202, 4959, 6448, 8850, 9129
Bpu14I TTCGAA 4 cut(s) 2785, 4841, 6657, 9157
BpuEI CTTGAG 7 cut(s) 622, 1033, 1349, 3884, 5150, 5860, 7295
BpuMI CCSGG 1 cut(s) 2963
Bsa29I ATCGAT 1 cut(s) 3651
BsaAI YACGTR 1 cut(s) 6698
BsaBI GATNNNNATC 3 cut(s) 1831, 4978, 5577
BsaHI GRCGYC 1 cut(s) 5945
BsaI GGTCTC 1 cut(s) 3086
BsaWI WCCGGW 7 cut(s) 482, 1096, 1585, 2713, 4288, 4540, 5396
Bse118I RCCGGY 1 cut(s) 2713
Bse21I CCTNAGG 4 cut(s) 1405, 3158, 4926, 9641
Bse3DI GCAATG 9 cut(s) 511, 1320, 2569, 3350, 4596, 5427, 6204, 7249, 8079
Bse8I GATNNNNATC 3 cut(s) 1831, 4978, 5577
BseAI TCCGGA 3 cut(s) 4288, 4540, 5396
BseCI ATCGAT 1 cut(s) 3651
BseJI GATNNNNATC 3 cut(s) 1831, 4978, 5577
BseMI GCAATG 9 cut(s) 511, 1320, 2569, 3350, 4596, 5427, 6204, 7249, 8079
BseRI GAGGAG 9 cut(s) 3090, 3455, 4454, 4867, 5019, 5120, 6427, 7241, 8342
BseSI GKGCMC 8 cut(s) 59, 4342, 4453, 4718, 6703, 6819, 7060, 9211
BseYI CCCAGC 4 cut(s) 3521, 7107, 7295, 8124
BsgI GTGCAG 2 cut(s) 5109, 8168
Bsh1236I CGCG 3 cut(s) 4515, 4517, 8862
Bsh1285I CGRYCG 1 cut(s) 2374
BshNI GGYRCC 1 cut(s) 9613
BshTI ACCGGT 1 cut(s) 2713
BshVI ATCGAT 1 cut(s) 3651
BsiEI CGRYCG 1 cut(s) 2374
BsiHKCI CYCGRG 2 cut(s) 5559, 7223
BsiSI CCGG 8 cut(s) 483, 1097, 1586, 2714, 2963, 4289, 4541, 5397
BsiWI CGTACG 1 cut(s) 3741
BslFI GGGAC 9 cut(s) 269, 645, 2411, 3011, 4312, 6080, 8092, 9418, 9440
BsmBI CGTCTC 2 cut(s) 3406, 5975
BsmFI GGGAC 9 cut(s) 269, 645, 2411, 3011, 4312, 6080, 8092, 9418, 9440
BsmI GAATGC 4 cut(s) 3998, 6653, 8842, 9165
Bso31I GGTCTC 1 cut(s) 3086
BsoBI CYCGRG 2 cut(s) 5559, 7223
Bsp119I TTCGAA 4 cut(s) 2785, 4841, 6657, 9157
Bsp120I GGGCCC 1 cut(s) 55
Bsp13I TCCGGA 3 cut(s) 4288, 4540, 5396
Bsp19I CCATGG 3 cut(s) 643, 2086, 2315
BspDI ATCGAT 1 cut(s) 3651
BspEI TCCGGA 3 cut(s) 4288, 4540, 5396
BspFNI CGCG 3 cut(s) 4515, 4517, 8862
BspHI TCATGA 3 cut(s) 919, 3262, 7357
BspMAI CTGCAG 6 cut(s) 1040, 2430, 5586, 6955, 7906, 8830
BspMI ACCTGC 5 cut(s) 164, 4979, 7909, 8140, 8470
BspOI GCTAGC 2 cut(s) 5694, 6027
BspQI GCTCTTC 2 cut(s) 3289, 6034
BspT104I TTCGAA 4 cut(s) 2785, 4841, 6657, 9157
BspT107I GGYRCC 1 cut(s) 9613
BspTI CTTAAG 2 cut(s) 3386, 5485
BspTNI GGTCTC 1 cut(s) 3086
BsrBI CCGCTC 1 cut(s) 7392
BsrDI GCAATG 9 cut(s) 511, 1320, 2569, 3350, 4596, 5427, 6204, 7249, 8079
BsrFI RCCGGY 1 cut(s) 2713
BssAI RCCGGY 1 cut(s) 2713
BssNAI GTATAC 1 cut(s) 1027
BssNI GRCGYC 1 cut(s) 5945
BssSI CACGAG 4 cut(s) 3072, 4385, 5652, 8982
BssT1I CCWWGG 5 cut(s) 643, 2086, 2306, 2315, 7030
Bst1107I GTATAC 1 cut(s) 1027
Bst2BI CACGAG 4 cut(s) 3072, 4385, 5652, 8982
BstACI GRCGYC 1 cut(s) 5945
BstAFI CTTAAG 2 cut(s) 3386, 5485
BstAPI GCANNNNNTGC 3 cut(s) 5183, 5519, 6203
BstBAI YACGTR 1 cut(s) 6698
BstBI TTCGAA 4 cut(s) 2785, 4841, 6657, 9157
BstDSI CCRYGG 5 cut(s) 643, 2086, 2315, 8860, 9652
BstEII GGTNACC 1 cut(s) 2310
BstENI CCTNNNNNAGG 1 cut(s) 5001
BstFNI CGCG 3 cut(s) 4515, 4517, 8862
BstH2I RGCGCY 1 cut(s) 2361
BstHHI GCGC 9 cut(s) 1890, 2360, 3615, 4517, 5069, 5378, 6726, 6745, 8550
BstMCI CGRYCG 1 cut(s) 2374
BstPAI GACNNNNGTC 1 cut(s) 1212
BstPI GGTNACC 1 cut(s) 2310
BstSLI GKGCMC 8 cut(s) 59, 4342, 4453, 4718, 6703, 6819, 7060, 9211
BstUI CGCG 3 cut(s) 4515, 4517, 8862
BstV2I GAAGAC 2 cut(s) 203, 8240
BstX2I RGATCY 8 cut(s) 329, 967, 1751, 1893, 4239, 5768, 6442, 8797
BstXI CCANNNNNNTGG 4 cut(s) 1003, 4813, 9282, 9477
BstYI RGATCY 8 cut(s) 329, 967, 1751, 1893, 4239, 5768, 6442, 8797
BstZ17I GTATAC 1 cut(s) 1027
Bsu15I ATCGAT 1 cut(s) 3651
Bsu36I CCTNAGG 4 cut(s) 1405, 3158, 4926, 9641
BsuI GTATCC 2 cut(s) 1820, 1921
BsuTUI ATCGAT 1 cut(s) 3651
BtgI CCRYGG 5 cut(s) 643, 2086, 2315, 8860, 9652
BtgZI GCGATG 2 cut(s) 5760, 5777
BtrI CACGTC 5 cut(s) 4886, 5174, 5969, 6223, 8195
BtsI GCAGTG 3 cut(s) 2124, 4687, 8844
BveI ACCTGC 5 cut(s) 164, 4979, 7909, 8140, 8470
CaiI CAGNNNCTG 4 cut(s) 233, 1633, 6464, 8825
CciI TCATGA 3 cut(s) 919, 3262, 7357
CfoI GCGC 9 cut(s) 1890, 2360, 3615, 4517, 5069, 5378, 6726, 6745, 8550
Cfr10I RCCGGY 1 cut(s) 2713
Cfr42I CCGCGG 1 cut(s) 8863
ClaI ATCGAT 1 cut(s) 3651
CseI GACGC 3 cut(s) 2408, 5934, 6450
CsiI ACCWGGT 2 cut(s) 779, 7656
CspAI ACCGGT 1 cut(s) 2713
CspCI CAANNNNNGTGG 4 cut(s) 2596, 2631, 6916, 6951
DraI TTTAAA 1 cut(s) 1495
DrdI GACNNNNNNGTC 2 cut(s) 5506, 5933
DriI GACNNNNNGTC 1 cut(s) 9635
DseDI GACNNNNNNGTC 2 cut(s) 5506, 5933
EaeI YGGCCR 4 cut(s) 3345, 5527, 7760, 8788
Eam1105I GACNNNNNGTC 1 cut(s) 9635
EciI GGCGGA 1 cut(s) 6564
Ecl136II GAGCTC 2 cut(s) 5564, 5657
Eco130I CCWWGG 5 cut(s) 643, 2086, 2306, 2315, 7030
Eco147I AGGCCT 1 cut(s) 9134
Eco24I GRGCYC 3 cut(s) 59, 5566, 5659
Eco31I GGTCTC 1 cut(s) 3086
Eco32I GATATC 3 cut(s) 3498, 5852, 5918
Eco47III AGCGCT 1 cut(s) 2359
Eco53kI GAGCTC 2 cut(s) 5564, 5657
Eco81I CCTNAGG 4 cut(s) 1405, 3158, 4926, 9641
Eco88I CYCGRG 2 cut(s) 5559, 7223
Eco91I GGTNACC 1 cut(s) 2310
EcoICRI GAGCTC 2 cut(s) 5564, 5657
EcoNI CCTNNNNNAGG 1 cut(s) 5001
EcoO65I GGTNACC 1 cut(s) 2310
EcoRI GAATTC 7 cut(s) 1179, 1720, 3563, 3573, 5675, 6403, 8772
EcoRV GATATC 3 cut(s) 3498, 5852, 5918
EcoT14I CCWWGG 5 cut(s) 643, 2086, 2306, 2315, 7030
EcoT22I ATGCAT 5 cut(s) 2144, 2668, 3877, 5346, 9592
EcoT38I GRGCYC 3 cut(s) 59, 5566, 5659
ErhI CCWWGG 5 cut(s) 643, 2086, 2306, 2315, 7030
Esp3I CGTCTC 2 cut(s) 3406, 5975
FaqI GGGAC 9 cut(s) 269, 645, 2411, 3011, 4312, 6080, 8092, 9418, 9440
FauI CCCGC 1 cut(s) 8371
FauNDI CATATG 2 cut(s) 2668, 4112
FbaI TGATCA 2 cut(s) 1846, 3787
FblI GTMKAC 2 cut(s) 1026, 6782
FriOI GRGCYC 3 cut(s) 59, 5566, 5659
FspI TGCGCA 1 cut(s) 1889
GlaI GCGC 9 cut(s) 1889, 2359, 3614, 4516, 5068, 5377, 6725, 6744, 8549
GsaI CCCAGC 4 cut(s) 3525, 7111, 7299, 8128
GsuI CTGGAG 9 cut(s) 4742, 5408, 6168, 7155, 7952, 7968, 8497, 8754, 9350
HaeII RGCGCY 1 cut(s) 2361
HapII CCGG 8 cut(s) 483, 1097, 1586, 2714, 2963, 4289, 4541, 5397
HgaI GACGC 3 cut(s) 2408, 5934, 6450
HhaI GCGC 9 cut(s) 1890, 2360, 3615, 4517, 5069, 5378, 6726, 6745, 8550
Hin1I GRCGYC 1 cut(s) 5945
Hin6I GCGC 9 cut(s) 1888, 2358, 3613, 4515, 5067, 5376, 6724, 6743, 8548
HinP1I GCGC 9 cut(s) 1888, 2358, 3613, 4515, 5067, 5376, 6724, 6743, 8548
HincII GTYRAC 7 cut(s) 2248, 2869, 3637, 6783, 8046, 8224, 9453
HindII GTYRAC 7 cut(s) 2248, 2869, 3637, 6783, 8046, 8224, 9453
HindIII AAGCTT 6 cut(s) 96, 1202, 1853, 6066, 8030, 8685
HpaI GTTAAC 1 cut(s) 9453
HpaII CCGG 8 cut(s) 483, 1097, 1586, 2714, 2963, 4289, 4541, 5397
Hpy99I CGWCG 3 cut(s) 2424, 2623, 7761
HpyCH4IV ACGT 9 cut(s) 3288, 3696, 4885, 5173, 5968, 6222, 6697, 8092, 8194
HpySE526I ACGT 9 cut(s) 3288, 3696, 4885, 5173, 5968, 6222, 6697, 8092, 8194
Hsp92I GRCGYC 1 cut(s) 5945
HspAI GCGC 9 cut(s) 1888, 2358, 3613, 4515, 5067, 5376, 6724, 6743, 8548
Kpn2I TCCGGA 3 cut(s) 4288, 4540, 5396
Ksp22I TGATCA 2 cut(s) 1846, 3787
KspAI GTTAAC 1 cut(s) 9453
KspI CCGCGG 1 cut(s) 8863
LguI GCTCTTC 2 cut(s) 3289, 6034
MabI ACCWGGT 2 cut(s) 779, 7656
MaeII ACGT 9 cut(s) 3288, 3696, 4885, 5173, 5968, 6222, 6697, 8092, 8194
MbiI CCGCTC 1 cut(s) 7392
MfeI CAATTG 2 cut(s) 2904, 8280
MflI RGATCY 8 cut(s) 329, 967, 1751, 1893, 4239, 5768, 6442, 8797
MlsI TGGCCA 3 cut(s) 3347, 5529, 8790
MluNI TGGCCA 3 cut(s) 3347, 5529, 8790
MmeI TCCRAC 9 cut(s) 63, 991, 3116, 3271, 3922, 6307, 7101, 7721, 7876
Mox20I TGGCCA 3 cut(s) 3347, 5529, 8790
Mph1103I ATGCAT 5 cut(s) 2144, 2668, 3877, 5346, 9592
MroI TCCGGA 3 cut(s) 4288, 4540, 5396
MroXI GAANNNNTTC 8 cut(s) 210, 915, 3563, 3930, 4578, 6517, 8353, 8397
MscI TGGCCA 3 cut(s) 3347, 5529, 8790
MslI CAYNNNNRTG 9 cut(s) 408, 3836, 4335, 5535, 6161, 6822, 7381, 9657, 9676
Msp20I TGGCCA 3 cut(s) 3347, 5529, 8790
MspA1I CMGCKG 9 cut(s) 6335, 6452, 6569, 6970, 7107, 8296, 8822, 8862, 9550
MspCI CTTAAG 2 cut(s) 3386, 5485
MspI CCGG 8 cut(s) 483, 1097, 1586, 2714, 2963, 4289, 4541, 5397
MunI CAATTG 2 cut(s) 2904, 8280
Mva1269I GAATGC 4 cut(s) 3998, 6653, 8842, 9165
MvnI CGCG 3 cut(s) 4515, 4517, 8862
NciI CCSGG 1 cut(s) 2963
NcoI CCATGG 3 cut(s) 643, 2086, 2315
NdeI CATATG 2 cut(s) 2668, 4112
NheI GCTAGC 2 cut(s) 5690, 6023
NmeAIII GCCGAG 1 cut(s) 9433
NmuCI GTSAC 8 cut(s) 1840, 1875, 2310, 3284, 4524, 7162, 8607, 8979
NsbI TGCGCA 1 cut(s) 1889
NsiI ATGCAT 5 cut(s) 2144, 2668, 3877, 5346, 9592
NspV TTCGAA 4 cut(s) 2785, 4841, 6657, 9157
OliI CACNNNNGTG 3 cut(s) 6822, 9657, 9676
PaeI GCATGC 7 cut(s) 2027, 3879, 5416, 6007, 7319, 8540, 9594
PaeR7I CTCGAG 1 cut(s) 5559
PagI TCATGA 3 cut(s) 919, 3262, 7357
PceI AGGCCT 1 cut(s) 9134
PciI ACATGT 5 cut(s) 1465, 3928, 5720, 6878, 7866
PciSI GCTCTTC 2 cut(s) 3289, 6034
PcsI WCGNNNNNNNCGW 1 cut(s) 3421
PctI GAATGC 4 cut(s) 3998, 6653, 8842, 9165
PdmI GAANNNNTTC 8 cut(s) 210, 915, 3563, 3930, 4578, 6517, 8353, 8397
Pfl23II CGTACG 1 cut(s) 3741
PflFI GACNNNGTC 1 cut(s) 991
PflMI CCANNNNNTGG 2 cut(s) 720, 1223
PfoI TCCNGGA 4 cut(s) 1758, 6145, 6423, 9231
PinAI ACCGGT 1 cut(s) 2713
Ple19I CGATCG 1 cut(s) 2374
Ppu21I YACGTR 1 cut(s) 6698
PpuMI RGGWCCY 6 cut(s) 2398, 2682, 4964, 8459, 9040, 9629
PscI ACATGT 5 cut(s) 1465, 3928, 5720, 6878, 7866
PshAI GACNNNNGTC 1 cut(s) 1212
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 2 cut(s) 5566, 5659
Psp5II RGGWCCY 6 cut(s) 2398, 2682, 4964, 8459, 9040, 9629
PspEI GGTNACC 1 cut(s) 2310
PspFI CCCAGC 4 cut(s) 3521, 7107, 7295, 8124
PspLI CGTACG 1 cut(s) 3741
PspOMI GGGCCC 1 cut(s) 55
PspPPI RGGWCCY 6 cut(s) 2398, 2682, 4964, 8459, 9040, 9629
PspXI VCTCGAGB 1 cut(s) 5559
PsrI GAACNNNNNNTAC 2 cut(s) 5145, 5177
PstI CTGCAG 6 cut(s) 1040, 2430, 5586, 6955, 7906, 8830
PstNI CAGNNNCTG 4 cut(s) 233, 1633, 6464, 8825
PsuI RGATCY 8 cut(s) 329, 967, 1751, 1893, 4239, 5768, 6442, 8797
PsyI GACNNNGTC 1 cut(s) 991
PvuI CGATCG 1 cut(s) 2374
PvuII CAGCTG 7 cut(s) 6335, 6452, 6569, 7107, 8296, 8822, 9550
RseI CAYNNNNRTG 9 cut(s) 408, 3836, 4335, 5535, 6161, 6822, 7381, 9657, 9676
SacI GAGCTC 2 cut(s) 5566, 5659
SacII CCGCGG 1 cut(s) 8863
SalI GTCGAC 1 cut(s) 6781
SapI GCTCTTC 2 cut(s) 3289, 6034
ScaI AGTACT 1 cut(s) 7767
SexAI ACCWGGT 2 cut(s) 779, 7656
Sfr274I CTCGAG 1 cut(s) 5559
Sfr303I CCGCGG 1 cut(s) 8863
SfuI TTCGAA 4 cut(s) 2785, 4841, 6657, 9157
SgrAI CRCCGGYG 1 cut(s) 2713
SgrBI CCGCGG 1 cut(s) 8863
SlaI CTCGAG 1 cut(s) 5559
SmiMI CAYNNNNRTG 9 cut(s) 408, 3836, 4335, 5535, 6161, 6822, 7381, 9657, 9676
SphI GCATGC 7 cut(s) 2027, 3879, 5416, 6007, 7319, 8540, 9594
SseBI AGGCCT 1 cut(s) 9134
SspI AATATT 9 cut(s) 199, 625, 1222, 1595, 4172, 4261, 5476, 6117, 6498
SstI GAGCTC 2 cut(s) 5566, 5659
StuI AGGCCT 1 cut(s) 9134
StyI CCWWGG 5 cut(s) 643, 2086, 2306, 2315, 7030
TaiI ACGT 9 cut(s) 3291, 3699, 4888, 5176, 5971, 6225, 6700, 8095, 8197
TatI WGTACW 7 cut(s) 1147, 2512, 4700, 5860, 7715, 7765, 8653
TauI GCSGC 5 cut(s) 2534, 4433, 6421, 6973, 8024
TseFI GTSAC 8 cut(s) 1840, 1875, 2310, 3284, 4524, 7162, 8607, 8979
Tsp45I GTSAC 8 cut(s) 1840, 1875, 2310, 3284, 4524, 7162, 8607, 8979
TspGWI ACGGA 4 cut(s) 4544, 5458, 7517, 7877
Tth111I GACNNNGTC 1 cut(s) 991
Van91I CCANNNNNTGG 2 cut(s) 720, 1223
Vha464I CTTAAG 2 cut(s) 3386, 5485
VneI GTGCAC 5 cut(s) 4338, 4714, 6699, 6815, 7056
XagI CCTNNNNNAGG 1 cut(s) 5001
XbaI TCTAGA 4 cut(s) 3151, 3902, 7045, 9046
XcmI CCANNNNNNNNNTGG 2 cut(s) 5165, 9171
XhoI CTCGAG 1 cut(s) 5559
XmaJI CCTAGG 1 cut(s) 7030
XmiI GTMKAC 2 cut(s) 1026, 6782
XmnI GAANNNNTTC 8 cut(s) 210, 915, 3563, 3930, 4578, 6517, 8353, 8397
ZrmI AGTACT 1 cut(s) 7767
Zsp2I ATGCAT 5 cut(s) 2144, 2668, 3877, 5346, 9592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.