Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8468041.1

Orthogroup ID

OG0003216

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1677

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8468041.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

atggatttgtctgtgggtgataaaggacttgctacacttcagttgctcaaatggggcccttctcagccccaactaaacttgtcagaatttcgtgaagccttcatttcacctacaagacagttattattattgctttcgtatcagtgtgaggctttattgtttcctctaattacaggtagtaataatttgcagtgtaatattgatgaaagtcttcaaagtccagagacagagcctggtaggtcagattcaataagggacgatttgccatgcacatctggatcattaggagatgttgataatgatttgagttttggaggggacagtttaagatctaaaagttacccttttgttggtgatgttaactctctggcttggggcgtttgtgaggacacttataatcagcacaaggatgctttatttagagagcttttgtttgtgtgtggcaagcaaggtattatggtccatgcttttgttgaatctaccggaaatactgcaacaaccagcaatgcacgggaaggtgggtatgggcaagggaggtgggttgagtgggggccttccgcttctttaattggaaatatggaggtggaggaacctaccagcttgagttctgaagctactggaaatattgaatttaacaaatccaatggaaacagtgaaagtccccatatttgtaatgtggatgggaatgaggagttctcaaaaagtgttgcttctaaaagatggttgcaatcttttttgactaaagttgaaaatgttgaatataatggtaaaatattgaccaggttcccggaaaagtcattgttgcctagctctgcaagagttgtttcatttagtttatttaatagtaatttggcaattttggactgccttgcaaacaatgattctgcatcagataaggcgtgcggtcaggaaacagttcatgagttggacagtgataaatctctgaaattagacataacttcatctgatccacatttcaagtctgagactttgtccaatcttttaggtgttggaatgaatagtgtgtacaaatgctgcagagtgttctcaagcaattctcattacttcattggatttgttttcacacaggttgatccggtaattgtcaatactagtgatgaaagtggaaaaagcaagaagaataatgtactgcttattgctagattagaccacatgggaattcattgggtttcctcagtgaagcttgacgaaagtccaaatattggctcagtagcacaatggacagacttccacttttctgataaacttcttgtttgtcttaatgcttgtgggctaattgtattttatgcagcaatgtcaggtgagtatgttgcacatatagatattttacagactttaggactcaactctgagttgcatttgcagaagcaggaagcagtttccacaggttatgataagcatattactcaagttgatgacattcagaacaaatcagttttgcaacatgttgattattctggcaggagactgtttaaaaggttgatttctgcttcacatacctctctagtagctgctattgatgattatggtgtaatatatgtggtttctgctggtgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spatacsin_C

Protein Analysis

526

Amino Acids

57.68

Weight (kDa)

4.97

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39420 AT4G39420 AT4G39420 AT4G39420
fragaria_vesca	FvH4_1g23050 FvH4_1g23050
malus_domestica	MD15G1330600.v1.1
prunus_persica	Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1 Prupe.6G168600_v2.0.a1
pyrus_communis	pycom15g29460
rosa_chinensis	RchiOBHm_Chr2g0117761
rosa_laevigata	RLG00000018366
rosa_multiflora	Rmu_co8468041.1_g000001 Rmu_sc0001617.1_g000039 Rmu_sc0001617.1_g000040 Rmu_sc0004795.1_g000020
rosa_roxburghii	Rroxscaffold_2G00126250
rosa_rugosa	Rorug02G0213800
rosa_samantha	Rh2AG269900 Rh2BG281300 Rh2CG270200 Rh2DG277600 Rh2DG295600
rosa_wichuraiana	Rw2G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	1223
AciI	CCGC	2 cut(s)	558, 903
AclWI	GGATC	3 cut(s)	286, 962, 1088
AcsI	RAATTY	3 cut(s)	86, 629, 1179
AcuI	CTGAAG	2 cut(s)	23, 630
AfaI	GTAC	2 cut(s)	1028, 1149
AfiI	CCNNNNNNNGG	2 cut(s)	350, 1223
AflIII	ACRYGT	1 cut(s)	1465
AgsI	TTSAA	7 cut(s)	215, 249, 476, 629, 749, 758, 979
AhlI	ACTAGT	1 cut(s)	1112
AjnI	CCWGG	2 cut(s)	232, 779
AluBI	AGCT	6 cut(s)	427, 600, 614, 810, 1204, 1532
AluI	AGCT	6 cut(s)	427, 600, 614, 810, 1204, 1532
Alw26I	GTCTC	3 cut(s)	218, 980, 1480
AlwI	GGATC	3 cut(s)	286, 962, 1088
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	55, 551
ApaI	GGGCCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	1035, 1310, 1532
ApoI	RAATTY	3 cut(s)	86, 629, 1179
Asp700I	GAANNNNTTC	2 cut(s)	210, 915
AspS9I	GGNCC	4 cut(s)	55, 56, 460, 551
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	4 cut(s)	29, 99, 365, 1334
AvaII	GGWCC	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	1022, 1322, 1519
BccI	CCATC	2 cut(s)	674, 714
BciT130I	CCWGG	2 cut(s)	234, 781
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	3 cut(s)	218, 980, 1480
BcuI	ACTAGT	1 cut(s)	1112
BfaI	CTAG	4 cut(s)	807, 1113, 1161, 1526
BfmI	CTRYAG	1 cut(s)	1036
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	3 cut(s)	1036, 1311, 1533
BlsI	GCNGC	3 cut(s)	1037, 1312, 1534
Bme1390I	CCNGG	3 cut(s)	234, 781, 788
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	4 cut(s)	55, 56, 460, 551
BmiI	GGNNCC	5 cut(s)	56, 57, 552, 591, 785
BmrFI	CCNGG	3 cut(s)	234, 781, 788
BmsI	GCATC	2 cut(s)	400, 896
BoxI	GACNNNNGTC	1 cut(s)	1212
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
BpuEI	CTTGAG	3 cut(s)	622, 1033, 1413
BpuMI	CCSGG	1 cut(s)	788
BsaWI	WCCGGW	2 cut(s)	482, 1096
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 1223
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	2 cut(s)	511, 1320
BseBI	CCWGG	2 cut(s)	234, 781
BseGI	GGATG	2 cut(s)	415, 685
BseLI	CCNNNNNNNGG	2 cut(s)	350, 1223
BseMI	GCAATG	2 cut(s)	511, 1320
BseMII	CTCAG	5 cut(s)	77, 975, 1209, 1242, 1362
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	3 cut(s)	1022, 1322, 1519
BshFI	GGCC	2 cut(s)	57, 553
BsiSI	CCGG	3 cut(s)	483, 788, 1097
BslFI	GGGAC	3 cut(s)	269, 332, 645
BslI	CCNNNNNNNGG	2 cut(s)	350, 1223
BsmAI	GTCTC	3 cut(s)	218, 980, 1480
BsmFI	GGGAC	3 cut(s)	269, 332, 645
BsnI	GGCC	2 cut(s)	57, 553
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	4 cut(s)	278, 329, 967, 1093
BspACI	CCGC	2 cut(s)	558, 903
BspANI	GGCC	2 cut(s)	57, 553
BspCNI	CTCAG	5 cut(s)	76, 976, 1208, 1241, 1363
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	5 cut(s)	56, 57, 552, 591, 785
BspMAI	CTGCAG	1 cut(s)	1040
BspPI	GGATC	3 cut(s)	286, 962, 1088
BsrDI	GCAATG	2 cut(s)	511, 1320
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	1 cut(s)	622
BssMI	GATC	4 cut(s)	278, 329, 967, 1093
Bst2UI	CCWGG	2 cut(s)	234, 781
Bst4CI	ACNGT	6 cut(s)	120, 323, 653, 916, 932, 1491
BstAUI	TGTACA	1 cut(s)	1026
BstC8I	GCNNGC	2 cut(s)	446, 901
BstDEI	CTNAG	5 cut(s)	63, 984, 1195, 1228, 1371
BstF5I	GGATG	2 cut(s)	415, 685
BstKTI	GATC	4 cut(s)	281, 332, 970, 1096
BstMAI	GTCTC	3 cut(s)	218, 980, 1480
BstMBI	GATC	4 cut(s)	278, 329, 967, 1093
BstNI	CCWGG	2 cut(s)	234, 781
BstNSI	RCATGY	1 cut(s)	1469
BstPAI	GACNNNNGTC	1 cut(s)	1212
BstSCI	CCNGG	3 cut(s)	232, 779, 786
BstSFI	CTRYAG	1 cut(s)	1036
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	1022, 1322, 1519
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	57, 553
BtsCI	GGATG	2 cut(s)	415, 685
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	5 cut(s)	149, 197, 658, 937, 1203
Cac8I	GCNNGC	2 cut(s)	446, 901
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	919
Cfr13I	GGNCC	4 cut(s)	55, 56, 460, 551
CsiI	ACCWGGT	1 cut(s)	779
Csp6I	GTAC	2 cut(s)	1027, 1148
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
CviAII	CATG	5 cut(s)	267, 464, 920, 1174, 1466
CviQI	GTAC	2 cut(s)	1027, 1148
DdeI	CTNAG	5 cut(s)	63, 984, 1195, 1228, 1371
DpnI	GATC	4 cut(s)	280, 331, 969, 1095
DpnII	GATC	4 cut(s)	278, 329, 967, 1093
DraI	TTTAAA	1 cut(s)	1495
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	23, 630
EcoO109I	RGGNCCY	3 cut(s)	55, 56, 551
EcoRI	GAATTC	1 cut(s)	1179
EcoRII	CCWGG	2 cut(s)	232, 779
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	5 cut(s)	270, 467, 923, 1177, 1469
FalI	AAGNNNNNCTT	4 cut(s)	328, 360, 694, 726
FaqI	GGGAC	3 cut(s)	269, 332, 645
FatI	CATG	5 cut(s)	266, 463, 919, 1173, 1465
Fnu4HI	GCNGC	3 cut(s)	1036, 1311, 1533
FokI	GGATG	2 cut(s)	422, 692
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	1036, 1311, 1533
FspBI	CTAG	4 cut(s)	807, 1113, 1161, 1526
GluI	GCNGC	3 cut(s)	1036, 1311, 1533
HaeIII	GGCC	2 cut(s)	57, 553
HapII	CCGG	3 cut(s)	483, 788, 1097
Hin1II	CATG	5 cut(s)	270, 467, 923, 1177, 1469
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	1202
HinfI	GANTC	4 cut(s)	245, 476, 881, 1362
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	3 cut(s)	483, 788, 1097
HphI	GGTGA	4 cut(s)	29, 99, 365, 1334
Hpy166II	GTNNAC	2 cut(s)	361, 1027
Hpy188III	TCNNGA	5 cut(s)	92, 221, 276, 908, 920
Hpy8I	GTNNAC	2 cut(s)	361, 1027
HpyAV	CCTTC	4 cut(s)	69, 109, 509, 564
HpyCH4III	ACNGT	6 cut(s)	120, 323, 653, 916, 932, 1491
HpyF3I	CTNAG	5 cut(s)	63, 984, 1195, 1228, 1371
Hsp92II	CATG	5 cut(s)	270, 467, 923, 1177, 1469
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	278, 329, 967, 1093
Lsp1109I	GCAGC	3 cut(s)	1022, 1322, 1519
LweI	GCATC	2 cut(s)	400, 896
MabI	ACCWGGT	1 cut(s)	779
MaeI	CTAG	4 cut(s)	807, 1113, 1161, 1526
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	280, 331, 969, 1095
MboI	GATC	4 cut(s)	278, 329, 967, 1093
MboII	GAAGA	2 cut(s)	203, 1150
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	1356
MmeI	TCCRAC	2 cut(s)	906, 991
MroXI	GAANNNNTTC	2 cut(s)	210, 915
MseI	TTAA	7 cut(s)	326, 360, 566, 633, 840, 1281, 1494
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	3 cut(s)	483, 788, 1097
MspR9I	CCNGG	3 cut(s)	234, 781, 788
MvaI	CCWGG	2 cut(s)	234, 781
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	4 cut(s)	278, 329, 967, 1093
NlaIII	CATG	5 cut(s)	270, 467, 923, 1177, 1469
NlaIV	GGNNCC	5 cut(s)	56, 57, 552, 591, 785
NspI	RCATGY	1 cut(s)	1469
PagI	TCATGA	1 cut(s)	919
PciI	ACATGT	1 cut(s)	1465
PdmI	GAANNNNTTC	2 cut(s)	210, 915
PfeI	GAWTC	3 cut(s)	245, 476, 881
PflFI	GACNNNGTC	1 cut(s)	991
PflMI	CCANNNNNTGG	1 cut(s)	1223
PfoI	TCCNGGA	1 cut(s)	786
PkrI	GCNGC	3 cut(s)	1037, 1312, 1534
PleI	GAGTC	1 cut(s)	1356
PpsI	GAGTC	1 cut(s)	1356
PscI	ACATGT	1 cut(s)	1465
PshAI	GACNNNNGTC	1 cut(s)	1212
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	232, 779
PspGI	CCWGG	2 cut(s)	232, 779
PspN4I	GGNNCC	5 cut(s)	56, 57, 552, 591, 785
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	4 cut(s)	55, 56, 460, 551
PstI	CTGCAG	1 cut(s)	1040
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	991
RsaI	GTAC	2 cut(s)	1028, 1149
RsaNI	GTAC	2 cut(s)	1027, 1148
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	7 cut(s)	326, 360, 566, 633, 840, 1281, 1494
SatI	GCNGC	3 cut(s)	1036, 1311, 1533
Sau3AI	GATC	4 cut(s)	278, 329, 967, 1093
Sau96I	GGNCC	4 cut(s)	55, 56, 460, 551
SchI	GAGTC	1 cut(s)	1356
ScrFI	CCNGG	3 cut(s)	234, 781, 788
SduI	GDGCHC	1 cut(s)	59
SexAI	ACCWGGT	1 cut(s)	779
SfaNI	GCATC	2 cut(s)	400, 896
SfcI	CTRYAG	1 cut(s)	1036
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	3 cut(s)	601, 1048, 1428
SmoI	CTYRAG	3 cut(s)	601, 1048, 1428
SpeI	ACTAGT	1 cut(s)	1112
SsiI	CCGC	2 cut(s)	558, 903
SspI	AATATT	4 cut(s)	199, 625, 774, 1222
SspMI	CTAG	4 cut(s)	807, 1113, 1161, 1526
StyD4I	CCNGG	3 cut(s)	232, 779, 786
TaaI	ACNGT	6 cut(s)	120, 323, 653, 916, 932, 1491
TatI	WGTACW	2 cut(s)	1026, 1147
TfiI	GAWTC	3 cut(s)	245, 476, 881
Tru1I	TTAA	7 cut(s)	326, 360, 566, 633, 840, 1281, 1494
Tru9I	TTAA	7 cut(s)	326, 360, 566, 633, 840, 1281, 1494
TscAI	CASTG	5 cut(s)	149, 197, 658, 937, 1203
TseI	GCWGC	3 cut(s)	1035, 1310, 1532
TspDTI	ATGAA	9 cut(s)	91, 219, 816, 908, 951, 1031, 1057, 1134, 1172
TspRI	CASTG	5 cut(s)	149, 197, 658, 937, 1203
Tth111I	GACNNNGTC	1 cut(s)	991
Van91I	CCANNNNNTGG	1 cut(s)	1223
VpaK11BI	GGWCC	1 cut(s)	460
XapI	RAATTY	3 cut(s)	86, 629, 1179
XceI	RCATGY	1 cut(s)	1469
XmnI	GAANNNNTTC	2 cut(s)	210, 915
XspI	CTAG	4 cut(s)	807, 1113, 1161, 1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.