FvH4_1g23430

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014643
Physical Location & Seq
Reverse (-)
15289285 .. 15290712
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23430.t1

Sequence Viewer

Length: 1428 bp
ATGGAAGTTGAGCTCATTGATCACCCTTTCAACCCGAGCTACATTGATGAACTCTATGACTGTAGCTTTGAATCTGATTCCTCCTTCCAAACATCGGATTTGTTTACTCCATGCACCACCAGTGTTGATCGAAACTTGGACCACGAGTGCCTCGATAGATTGCAGCAAATTGAAGCGCAGCTCATGGACATAGACTCGTCTATCAGTGAAAGTGATGTAATCGATGTCAATGGTCTTGTTGGTAGTGTCCATGTTTTGACAGAAGGAAACTCCCTTTTGAAGGAGATTCAGATAGAGTGGCTGGAAGAGAGCAGTTTAACTGAACTCTTATTCGCAGGAGCTGAAGCTGTTGAAGCACAGAATTGGGTTTTTGCTTCAAACATAATCGCAAAGCTCAACATTCTTCTACTCGGTAGCGAAAATGGAGACAACTCGTTCCACAAGTTGGCCATGTTCTTCTCTCAAGGCCTTCATTACAAGACCAGCAACTCTCCTCAAGTTCCCCACAAGCCAGCTGTTTCTAGAAACACAGACACAATGTCTTCATTTCAGATGCTCCAAGAGCTCTCTCCTTACGTTAAGTTTGCGCATTTCACAGCAAACCAAGCTATTCTCGAGTCCACACAAGAGGATGAAGACATTCATGTCATCGACTTTGATATCATGGAGGGTAGCCAGTGGCCTTCATTGATGGTTGACCTTGCAATGAGGAAAGGTCGCCGCTGCGCTTCTCTCAGGGTAACTGCCGTCACAGTCGACCAACAAAGTGCCGCTCTTGCCCAACAAACCGGAAGAAGGCTTAAAGAGTTCTCGGAGTCTATCAATTTGTCATTTATTTTTGATCAGATGATGGTGGCCACAGAAGAAGATTTTCCAAAAATCGAAGTTATTGATGATGCAGTAATAGCCAATTGCATGATTCACCAGCTTCACATGCCGAACAGAAGTATCTCATTTGTGAAGACCTTCTTGGGTGGCATGAGCAAGCTATCACCTAAGCTCATTGTCCTAGTACAAGAAGAGTTGTTCAACTTTTACAAAATGCCTTCAATGTTCTTTGCAGAGTTCTTCTCCGAGGCTCTCCATCACTACAATGCGCTTTGCGACTCGCTTGTGTCTAGTTTTAGCCGCGAGTACAAAATGGGGCTAAGACAGATAGAGAAAGAGGTATTGGGGGTCAAGATTTTAGAAAGTGTCAGGCAGTTCCCATGTGAGAAGGAGGAAAGAATGTTGTGGGAAGATTGTTTTGCTTCCTTGAAGGGCTTCAAGTCTATCCCTTTGAGTTCTTCTAATGTTTCTCAAGCCAAATACTTGGTGAGTCTGTTCCATAGGGGATATTGGGTGCAGCATGAGAAGGGCAGGTTATCTTTGTGTTGGAAATCAAGACCTCTGACATCTGCTTCCATTTGGGTGCCCTTAACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

476

Amino Acids

53.99

Weight (kDa)

4.95

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 107 - 470 4.1e-78 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 644
Acc16I TGCGCA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 1350
AccB1I GGYRCC 1 cut(s) 1411
AccB7I CCANNNNNTGG 1 cut(s) 445
AccBSI CCGCTC 1 cut(s) 773
AccI GTMKAC 1 cut(s) 756
AccII CGCG 1 cut(s) 1131
AciI CCGC 3 cut(s) 721, 771, 1129
AcoI YGGCCR 2 cut(s) 447, 855
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 2 cut(s) 1014, 1136
AfiI CCNNNNNNNGG 4 cut(s) 94, 280, 445, 795
AhdI GACNNNNNGTC 1 cut(s) 538
AjuI GAANNNNNNNTTGG 4 cut(s) 953, 985, 1154, 1186
Alw21I GWGCWC 2 cut(s) 15, 567
Alw26I GTCTC 1 cut(s) 420
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 2 cut(s) 34, 614
AoxI GGCC 4 cut(s) 447, 466, 680, 855
ApeKI GCWGC 4 cut(s) 163, 178, 723, 1345
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 4 cut(s) 639, 870, 965, 1262
AspLEI GCGC 4 cut(s) 178, 589, 728, 1099
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 14, 914, 984, 1327
AvaI CYCGRG 2 cut(s) 34, 614
AvaII GGWCC 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 1416
BaeI ACNNNNGTAYC 2 cut(s) 931, 964
BalI TGGCCA 2 cut(s) 449, 857
BanI GGYRCC 1 cut(s) 1411
BanII GRGCYC 2 cut(s) 15, 567
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 3 cut(s) 534, 642, 968
Bbv12I GWGCWC 2 cut(s) 15, 567
BbvI GCAGC 4 cut(s) 175, 190, 710, 1357
BccI CCATC 3 cut(s) 685, 844, 1092
BceAI ACGGC 1 cut(s) 731
BclI TGATCA 2 cut(s) 19, 841
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 3 cut(s) 522, 1010, 1119
BfmI CTRYAG 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 1350
BisI GCNGC 7 cut(s) 164, 179, 721, 724, 771, 1129, 1346
BlsI GCNGC 7 cut(s) 165, 180, 722, 725, 772, 1130, 1347
Bme18I GGWCC 1 cut(s) 139
BmeRI GACNNNNNGTC 1 cut(s) 538
BmeT110I CYCGRG 2 cut(s) 34, 614
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 1413
BmsI GCATC 2 cut(s) 543, 886
BpiI GAAGAC 3 cut(s) 534, 642, 968
BplI GAGNNNNNCTC 2 cut(s) 1055, 1087
Bpu10I CCTNAGC 1 cut(s) 996
BpuEI CTTGAG 3 cut(s) 447, 480, 1284
Bsa29I ATCGAT 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 1074
BsaWI WCCGGW 1 cut(s) 788
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 280, 445, 795
Bse1I ACTGG 2 cut(s) 120, 676
Bse3DI GCAATG 1 cut(s) 711
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 1074
BseGI GGATG 1 cut(s) 637
BseLI CCNNNNNNNGG 4 cut(s) 94, 280, 445, 795
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 1 cut(s) 748
BseNI ACTGG 2 cut(s) 120, 676
BseRI GAGGAG 1 cut(s) 483
BseSI GKGCMC 1 cut(s) 1416
BseXI GCAGC 4 cut(s) 175, 190, 710, 1357
BsgI GTGCAG 1 cut(s) 1364
Bsh1236I CGCG 1 cut(s) 1131
BshFI GGCC 4 cut(s) 449, 468, 682, 857
BshNI GGYRCC 1 cut(s) 1411
BshVI ATCGAT 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 15, 567
BsiHKCI CYCGRG 2 cut(s) 34, 614
BsiSI CCGG 1 cut(s) 789
BslI CCNNNNNNNGG 4 cut(s) 94, 280, 445, 795
BsmAI GTCTC 1 cut(s) 420
BsnI GGCC 4 cut(s) 449, 468, 682, 857
BsoBI CYCGRG 2 cut(s) 34, 614
Bsp1286I GDGCHC 3 cut(s) 15, 567, 1416
Bsp143I GATC 3 cut(s) 19, 127, 841
BspACI CCGC 3 cut(s) 721, 771, 1129
BspANI GGCC 4 cut(s) 449, 468, 682, 857
BspCNI CTCAG 1 cut(s) 747
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 1131
BspLI GGNNCC 1 cut(s) 1413
BspMI ACCTGC 1 cut(s) 1350
BspT107I GGYRCC 1 cut(s) 1411
BsrBI CCGCTC 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 711
BsrI ACTGG 2 cut(s) 120, 676
BssECI CCNNGG 1 cut(s) 1074
BssMI GATC 3 cut(s) 19, 127, 841
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 62, 754
Bst6I CTCTTC 2 cut(s) 300, 1014
BstC8I GCNNGC 2 cut(s) 513, 986
BstDEI CTNAG 3 cut(s) 734, 996, 1148
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 637
BstFNI CGCG 1 cut(s) 1131
BstHHI GCGC 4 cut(s) 178, 589, 728, 1099
BstKTI GATC 3 cut(s) 22, 130, 844
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 3 cut(s) 19, 127, 841
BstMWI GCNNNNNNNGC 6 cut(s) 353, 562, 605, 776, 905, 934
BstNSI RCATGY 1 cut(s) 937
BstSFI CTRYAG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 1416
BstUI CGCG 1 cut(s) 1131
BstV1I GCAGC 4 cut(s) 175, 190, 710, 1357
BstV2I GAAGAC 3 cut(s) 534, 642, 968
BstXI CCANNNNNNTGG 1 cut(s) 1312
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 4 cut(s) 449, 468, 682, 857
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 1 cut(s) 637
BtsIMutI CAGTG 3 cut(s) 127, 211, 683
BveI ACCTGC 1 cut(s) 1350
Cac8I GCNNGC 2 cut(s) 513, 986
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 4 cut(s) 178, 589, 728, 1099
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 2 cut(s) 1013, 1135
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviQI GTAC 2 cut(s) 1013, 1135
DdeI CTNAG 3 cut(s) 734, 996, 1148
DpnI GATC 3 cut(s) 21, 129, 843
DpnII GATC 3 cut(s) 19, 127, 841
DrdI GACNNNNNNGTC 1 cut(s) 644
DriI GACNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 644
EaeI YGGCCR 2 cut(s) 447, 855
Eam1104I CTCTTC 2 cut(s) 300, 1014
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 2 cut(s) 300, 1014
Ecl136II GAGCTC 2 cut(s) 13, 565
Eco147I AGGCCT 1 cut(s) 468
Eco24I GRGCYC 2 cut(s) 15, 567
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 139
Eco53kI GAGCTC 2 cut(s) 13, 565
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 2 cut(s) 34, 614
EcoICRI GAGCTC 2 cut(s) 13, 565
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRV GATATC 1 cut(s) 661
EcoT38I GRGCYC 2 cut(s) 15, 567
FalI AAGNNNNNCTT 2 cut(s) 953, 985
FbaI TGATCA 2 cut(s) 19, 841
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 7 cut(s) 164, 179, 721, 724, 771, 1129, 1346
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 2 cut(s) 15, 567
Fsp4HI GCNGC 7 cut(s) 164, 179, 721, 724, 771, 1129, 1346
FspBI CTAG 3 cut(s) 522, 1010, 1119
FspI TGCGCA 1 cut(s) 588
GlaI GCGC 4 cut(s) 177, 588, 727, 1098
GluI GCNGC 7 cut(s) 164, 179, 721, 724, 771, 1129, 1346
HaeIII GGCC 4 cut(s) 449, 468, 682, 857
HapII CCGG 1 cut(s) 789
HhaI GCGC 4 cut(s) 178, 589, 728, 1099
Hin6I GCGC 4 cut(s) 176, 587, 726, 1097
HinP1I GCGC 4 cut(s) 176, 587, 726, 1097
HincII GTYRAC 2 cut(s) 697, 757
HindII GTYRAC 2 cut(s) 697, 757
HinfI GANTC 9 cut(s) 71, 77, 194, 286, 617, 815, 919, 1106, 1318
HpaII CCGG 1 cut(s) 789
HphI GGTGA 4 cut(s) 14, 914, 984, 1327
Hpy166II GTNNAC 4 cut(s) 105, 621, 697, 757
Hpy188I TCNGA 8 cut(s) 76, 97, 291, 552, 814, 846, 1075, 1392
Hpy188III TCNNGA 4 cut(s) 522, 614, 1180, 1383
Hpy8I GTNNAC 4 cut(s) 105, 621, 697, 757
HpyCH4III ACNGT 2 cut(s) 62, 754
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 7 cut(s) 114, 163, 704, 899, 915, 1061, 1345
HpyF10VI GCNNNNNNNGC 6 cut(s) 353, 562, 605, 776, 905, 934
HpyF3I CTNAG 3 cut(s) 734, 996, 1148
HpySE526I ACGT 1 cut(s) 576
HspAI GCGC 4 cut(s) 176, 587, 726, 1097
Ksp22I TGATCA 2 cut(s) 19, 841
Kzo9I GATC 3 cut(s) 19, 127, 841
LmnI GCTCC 2 cut(s) 338, 561
Lsp1109I GCAGC 4 cut(s) 175, 190, 710, 1357
LweI GCATC 2 cut(s) 543, 886
MaeI CTAG 3 cut(s) 522, 1010, 1119
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 739, 748
MalI GATC 3 cut(s) 21, 129, 843
MbiI CCGCTC 1 cut(s) 773
MboI GATC 3 cut(s) 19, 127, 841
MfeI CAATTG 1 cut(s) 910
MhlI GDGCHC 3 cut(s) 15, 567, 1416
MlsI TGGCCA 2 cut(s) 449, 857
MluCI AATT 4 cut(s) 168, 361, 823, 910
MluNI TGGCCA 2 cut(s) 449, 857
MlyI GAGTC 5 cut(s) 188, 626, 824, 1100, 1327
MmeI TCCRAC 1 cut(s) 1355
Mox20I TGGCCA 2 cut(s) 449, 857
MroXI GAANNNNTTC 4 cut(s) 639, 870, 965, 1262
MscI TGGCCA 2 cut(s) 449, 857
MseI TTAA 4 cut(s) 317, 579, 801, 1418
MslI CAYNNNNRTG 2 cut(s) 1092, 1409
Msp20I TGGCCA 2 cut(s) 449, 857
MspA1I CMGCKG 2 cut(s) 515, 723
MspI CCGG 1 cut(s) 789
MunI CAATTG 1 cut(s) 910
MvnI CGCG 1 cut(s) 1131
MwoI GCNNNNNNNGC 6 cut(s) 353, 562, 605, 776, 905, 934
NdeII GATC 3 cut(s) 19, 127, 841
NlaIV GGNNCC 1 cut(s) 1413
NmuCI GTSAC 1 cut(s) 748
NsbI TGCGCA 1 cut(s) 588
NspI RCATGY 1 cut(s) 937
PaeR7I CTCGAG 1 cut(s) 614
PceI AGGCCT 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 4 cut(s) 639, 870, 965, 1262
PfeI GAWTC 4 cut(s) 71, 77, 286, 919
PflMI CCANNNNNTGG 1 cut(s) 445
PkrI GCNGC 7 cut(s) 165, 180, 722, 725, 772, 1130, 1347
PleI GAGTC 5 cut(s) 188, 625, 823, 1100, 1326
PpsI GAGTC 5 cut(s) 188, 625, 823, 1100, 1326
Psp124BI GAGCTC 2 cut(s) 15, 567
PspN4I GGNNCC 1 cut(s) 1413
PspPI GGNCC 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 1014, 1136
RsaNI GTAC 2 cut(s) 1013, 1135
RseI CAYNNNNRTG 2 cut(s) 1092, 1409
SacI GAGCTC 2 cut(s) 15, 567
SalI GTCGAC 1 cut(s) 755
SaqAI TTAA 4 cut(s) 317, 579, 801, 1418
SatI GCNGC 7 cut(s) 164, 179, 721, 724, 771, 1129, 1346
Sau3AI GATC 3 cut(s) 19, 127, 841
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 5 cut(s) 188, 626, 824, 1100, 1327
SduI GDGCHC 3 cut(s) 15, 567, 1416
SfaNI GCATC 2 cut(s) 543, 886
SfcI CTRYAG 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 614
SinI GGWCC 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 614
SmiMI CAYNNNNRTG 2 cut(s) 1092, 1409
SmlI CTYRAG 4 cut(s) 462, 495, 614, 1299
SmoI CTYRAG 4 cut(s) 462, 495, 614, 1299
Sse9I AATT 4 cut(s) 168, 361, 823, 910
SseBI AGGCCT 1 cut(s) 468
SsiI CCGC 3 cut(s) 721, 771, 1129
SspMI CTAG 3 cut(s) 522, 1010, 1119
SstI GAGCTC 2 cut(s) 15, 567
StuI AGGCCT 1 cut(s) 468
TaaI ACNGT 2 cut(s) 62, 754
TaiI ACGT 1 cut(s) 579
TaqI TCGA 7 cut(s) 130, 153, 222, 615, 651, 756, 882
TasI AATT 4 cut(s) 168, 361, 823, 910
TatI WGTACW 2 cut(s) 1012, 1134
TauI GCSGC 3 cut(s) 723, 773, 1131
TfiI GAWTC 4 cut(s) 71, 77, 286, 919
Tru1I TTAA 4 cut(s) 317, 579, 801, 1418
Tru9I TTAA 4 cut(s) 317, 579, 801, 1418
TscAI CASTG 3 cut(s) 127, 211, 683
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 4 cut(s) 163, 178, 723, 1345
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 6 cut(s) 63, 461, 534, 632, 648, 675
TspRI CASTG 3 cut(s) 127, 211, 683
Van91I CCANNNNNTGG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 139
XagI CCTNNNNNAGG 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 614
XmiI GTMKAC 1 cut(s) 756
XmnI GAANNNNTTC 4 cut(s) 639, 870, 965, 1262
XspI CTAG 3 cut(s) 522, 1010, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.