Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001814.1

Orthogroup ID

OG0014643

Physical Location & Seq

Genomic Coordinates Forward (+)

111155 .. 112651

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001814.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

atggaagttgagctcattgatcacccattcaacccgagctacgacctctatgactgtagctttgaatatgattcgtccttccaaacatcagatttatttactccttgtaccaccaatgttgagcaaaactcggaccacgagtgcctcaacagattgctccaaatagaagcacagctcatggacatagactcgtctatcagcagtactggaagtgatgtaattggtcttgatggtggtgttgatagtgaattcgcttcttacataagtgaagaagcaccagaaaatgtccatgtttcgacagaatccaactcccttttgaaggagattcagatagatttgctggaagagagcagcttaactgaacttttattcgcaggagctgaagcagttgaagcacagaactgggtttttgcttcaaatataatcacaaagctcaacactcttctagccggtagcgaaaatggagacaactcgttcaacaagttggccacgttcttcactcaaggccttcattacaagaccattaactctcctgaagttccccatgagccagctgtttctagaaacacagacacaatgtcttcatttcagatgctccaagagctctctccttttgttaaatttgcgcatttcacagccaaccaagcgattctcgaggccacacaagaggatgaggacattcatgtcattgactttgacatcatggagggtagccagtggccttcattgatggttgaccttgcaatgaggaaaggtcgctgctgtgcttcactcaaggtaaccgcagtcacagttgaccagcaaagcgccgctcttgctcaacaaactggaagaaggcttaaagagttctcggagtctatcaatttgttatttatttttgatcatatgatgatggccacagaagaagattttgctaaaatcgaagttgttgctgatgcagtagtagccaattgcatgattcaccagcttcacatgcctaacagaagtatctcattagtgaaggccttcttgggtggcatgagcaaattatcacctaaactcattgtcctagtacaagaagagttgttcaacttttccaagatgccatcaatgttctttgcagagttcttctccgaggctctccatcactacaattcgctttgcgactctcttttaactagttttagtggtgagtataaaatggggttaagacagatagagaaagaggttttgaggatcaagattttagaaagtgtcaggcagttcgcatgtgagaaggaggatagaatgttgtgggaagattgttttgcttcgttgaagggcttcaagtctatccctttaagttcttgtaatgtttctcaagctaaatacttggtgagtcttttcaataggggatattgggtgcagcatgagaagggcaggttagctttgtgttggaaatcaagacctttgacaacagcttccatttgggtgcccttaacttacaaaatcaaggaaaaccatgtcaaccccttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

498

Amino Acids

56.19

Weight (kDa)

4.78

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23430
malus_domestica	MD01G1002300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118791 RchiOBHm_Chr2g0118801
rosa_laevigata	RLG00000018421
rosa_multiflora	Rmu_sc0001814.1_g000020 Rmu_sc0003729.1_g000009
rosa_roxburghii	Rroxscaffold_2G00124720 Rroxscaffold_2G00125180
rosa_rugosa	Rorug02G0218600
rosa_samantha	Rh2AG275700 Rh2BG287400 Rh2BG287500 Rh2DG282700 Rh2DG282800 Rh2DG301900
rosa_wichuraiana	Rw2G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
Acc16I	TGCGCA	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	1389
AccB1I	GGYRCC	1 cut(s)	1450
AccBSI	CCGCTC	1 cut(s)	812
AciI	CCGC	2 cut(s)	783, 810
AclWI	GGATC	1 cut(s)	1223
AcoI	YGGCCR	2 cut(s)	486, 894
AcsI	RAATTY	2 cut(s)	248, 620
AcuI	CTGAAG	2 cut(s)	402, 555
AfaI	GTAC	3 cut(s)	109, 205, 1053
AfiI	CCNNNNNNNGG	1 cut(s)	319
AhdI	GACNNNNNGTC	1 cut(s)	577
AhlI	ACTAGT	1 cut(s)	1157
AjuI	GAANNNNNNNTTGG	2 cut(s)	992, 1024
Alw21I	GWGCWC	2 cut(s)	15, 606
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	1223
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	2 cut(s)	34, 653
AoxI	GGCC	6 cut(s)	486, 505, 657, 719, 894, 1002
ApeKI	GCWGC	3 cut(s)	351, 759, 1384
ApoI	RAATTY	2 cut(s)	248, 620
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	2 cut(s)	1004, 1301
AspLEI	GCGC	2 cut(s)	628, 809
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	5 cut(s)	14, 953, 1023, 1181, 1366
AvaI	CYCGRG	2 cut(s)	34, 653
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	1455
BaeI	ACNNNNGTAYC	2 cut(s)	970, 1003
BalI	TGGCCA	2 cut(s)	488, 896
BanI	GGYRCC	1 cut(s)	1450
BanII	GRGCYC	2 cut(s)	15, 606
BauI	CACGAG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	573
Bbv12I	GWGCWC	2 cut(s)	15, 606
BbvI	GCAGC	3 cut(s)	363, 746, 1396
BccI	CCATC	5 cut(s)	224, 724, 886, 1093, 1131
BcgI	CGANNNNNNTGC	2 cut(s)	911, 945
BclI	TGATCA	2 cut(s)	19, 880
BcoDI	GTCTC	1 cut(s)	459
BcuI	ACTAGT	1 cut(s)	1157
BfaI	CTAG	4 cut(s)	446, 561, 1049, 1158
BfmI	CTRYAG	1 cut(s)	55
BfoI	RGCGCY	1 cut(s)	810
BfuAI	ACCTGC	1 cut(s)	1389
BisI	GCNGC	4 cut(s)	352, 760, 810, 1385
BlsI	GCNGC	4 cut(s)	353, 761, 811, 1386
BmcAI	AGTACT	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmeT110I	CYCGRG	2 cut(s)	34, 653
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	1452
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	3 cut(s)	582, 925, 1071
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	573
BplI	GAGNNNNNCTC	4 cut(s)	113, 145, 1094, 1126
BpuEI	CTTGAG	3 cut(s)	486, 758, 1323
BsaJI	CCNNGG	1 cut(s)	1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	4 cut(s)	211, 407, 715, 832
Bse3DI	GCAATG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	1113
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	750
BseNI	ACTGG	4 cut(s)	211, 407, 715, 832
BseSI	GKGCMC	1 cut(s)	1455
BseXI	GCAGC	3 cut(s)	363, 746, 1396
BsgI	GTGCAG	1 cut(s)	1403
BshFI	GGCC	6 cut(s)	488, 507, 659, 721, 896, 1004
BshNI	GGYRCC	1 cut(s)	1450
BsiHKAI	GWGCWC	2 cut(s)	15, 606
BsiHKCI	CYCGRG	2 cut(s)	34, 653
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	6 cut(s)	488, 507, 659, 721, 896, 1004
BsoBI	CYCGRG	2 cut(s)	34, 653
Bsp1286I	GDGCHC	3 cut(s)	15, 606, 1455
Bsp143I	GATC	3 cut(s)	19, 880, 1215
BspACI	CCGC	2 cut(s)	783, 810
BspANI	GGCC	6 cut(s)	488, 507, 659, 721, 896, 1004
BspLI	GGNNCC	1 cut(s)	1452
BspMI	ACCTGC	1 cut(s)	1389
BspPI	GGATC	1 cut(s)	1223
BspT107I	GGYRCC	1 cut(s)	1450
BsrBI	CCGCTC	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	4 cut(s)	211, 407, 715, 832
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	1113
BssMI	GATC	3 cut(s)	19, 880, 1215
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	56, 793
Bst6I	CTCTTC	3 cut(s)	339, 447, 1053
BstC8I	GCNNGC	1 cut(s)	552
BstEII	GGTNACC	1 cut(s)	778
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	810
BstHHI	GCGC	2 cut(s)	628, 809
BstKTI	GATC	3 cut(s)	22, 883, 1218
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	19, 880, 1215
BstMWI	GCNNNNNNNGC	6 cut(s)	392, 601, 644, 815, 944, 973
BstNSI	RCATGY	2 cut(s)	976, 1251
BstPI	GGTNACC	1 cut(s)	778
BstSFI	CTRYAG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	1455
BstV1I	GCAGC	3 cut(s)	363, 746, 1396
BstV2I	GAAGAC	1 cut(s)	573
BsuRI	GGCC	6 cut(s)	488, 507, 659, 721, 896, 1004
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	722
BveI	ACCTGC	1 cut(s)	1389
Cac8I	GCNNGC	1 cut(s)	552
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	2 cut(s)	628, 809
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	108, 204, 1052
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviQI	GTAC	3 cut(s)	108, 204, 1052
DpnI	GATC	3 cut(s)	21, 882, 1217
DpnII	GATC	3 cut(s)	19, 880, 1215
DrdI	GACNNNNNNGTC	1 cut(s)	683
DriI	GACNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	683
EaeI	YGGCCR	2 cut(s)	486, 894
Eam1104I	CTCTTC	3 cut(s)	339, 447, 1053
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EarI	CTCTTC	3 cut(s)	339, 447, 1053
Ecl136II	GAGCTC	2 cut(s)	13, 604
Eco147I	AGGCCT	2 cut(s)	507, 1004
Eco24I	GRGCYC	2 cut(s)	15, 606
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	2 cut(s)	13, 604
Eco57I	CTGAAG	2 cut(s)	402, 555
Eco88I	CYCGRG	2 cut(s)	34, 653
Eco91I	GGTNACC	1 cut(s)	778
EcoICRI	GAGCTC	2 cut(s)	13, 604
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	248
EcoT38I	GRGCYC	2 cut(s)	15, 606
FalI	AAGNNNNNCTT	2 cut(s)	992, 1024
FauNDI	CATATG	1 cut(s)	885
FbaI	TGATCA	2 cut(s)	19, 880
Fnu4HI	GCNGC	4 cut(s)	352, 760, 810, 1385
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	2 cut(s)	15, 606
Fsp4HI	GCNGC	4 cut(s)	352, 760, 810, 1385
FspBI	CTAG	4 cut(s)	446, 561, 1049, 1158
FspI	TGCGCA	1 cut(s)	627
GlaI	GCGC	2 cut(s)	627, 808
GluI	GCNGC	4 cut(s)	352, 760, 810, 1385
HaeII	RGCGCY	1 cut(s)	810
HaeIII	GGCC	6 cut(s)	488, 507, 659, 721, 896, 1004
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	2 cut(s)	628, 809
Hin6I	GCGC	2 cut(s)	626, 807
HinP1I	GCGC	2 cut(s)	626, 807
HincII	GTYRAC	3 cut(s)	736, 796, 1486
HindII	GTYRAC	3 cut(s)	736, 796, 1486
HinfI	GANTC	9 cut(s)	71, 188, 302, 325, 649, 854, 958, 1145, 1357
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	5 cut(s)	14, 953, 1023, 1181, 1366
Hpy166II	GTNNAC	3 cut(s)	736, 796, 1486
Hpy188I	TCNGA	6 cut(s)	91, 133, 330, 591, 853, 1114
Hpy188III	TCNNGA	6 cut(s)	227, 533, 561, 653, 1219, 1422
Hpy8I	GTNNAC	3 cut(s)	736, 796, 1486
HpyCH4III	ACNGT	2 cut(s)	56, 793
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	5 cut(s)	743, 938, 954, 1100, 1384
HpyF10VI	GCNNNNNNNGC	6 cut(s)	392, 601, 644, 815, 944, 973
HpySE526I	ACGT	1 cut(s)	491
HspAI	GCGC	2 cut(s)	626, 807
Ksp22I	TGATCA	2 cut(s)	19, 880
Kzo9I	GATC	3 cut(s)	19, 880, 1215
LmnI	GCTCC	3 cut(s)	162, 377, 600
Lsp1109I	GCAGC	3 cut(s)	363, 746, 1396
LweI	GCATC	3 cut(s)	582, 925, 1071
MaeI	CTAG	4 cut(s)	446, 561, 1049, 1158
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	778, 787
MalI	GATC	3 cut(s)	21, 882, 1217
MbiI	CCGCTC	1 cut(s)	812
MboI	GATC	3 cut(s)	19, 880, 1215
MfeI	CAATTG	1 cut(s)	949
MhlI	GDGCHC	3 cut(s)	15, 606, 1455
MlsI	TGGCCA	2 cut(s)	488, 896
MluCI	AATT	7 cut(s)	219, 248, 620, 862, 949, 1025, 1132
MluNI	TGGCCA	2 cut(s)	488, 896
MlyI	GAGTC	4 cut(s)	182, 863, 1139, 1366
MmeI	TCCRAC	2 cut(s)	330, 1394
Mox20I	TGGCCA	2 cut(s)	488, 896
MroXI	GAANNNNTTC	2 cut(s)	1004, 1301
MscI	TGGCCA	2 cut(s)	488, 896
MseI	TTAA	8 cut(s)	356, 525, 618, 840, 1154, 1187, 1319, 1457
MslI	CAYNNNNRTG	1 cut(s)	1448
Msp20I	TGGCCA	2 cut(s)	488, 896
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	949
MwoI	GCNNNNNNNGC	6 cut(s)	392, 601, 644, 815, 944, 973
NdeI	CATATG	1 cut(s)	885
NdeII	GATC	3 cut(s)	19, 880, 1215
NlaIV	GGNNCC	1 cut(s)	1452
NmuCI	GTSAC	1 cut(s)	787
NsbI	TGCGCA	1 cut(s)	627
NspI	RCATGY	2 cut(s)	976, 1251
PaeR7I	CTCGAG	1 cut(s)	653
PceI	AGGCCT	2 cut(s)	507, 1004
PdmI	GAANNNNTTC	2 cut(s)	1004, 1301
PfeI	GAWTC	5 cut(s)	71, 302, 325, 649, 958
PkrI	GCNGC	4 cut(s)	353, 761, 811, 1386
PleI	GAGTC	4 cut(s)	182, 862, 1139, 1365
PpsI	GAGTC	4 cut(s)	182, 862, 1139, 1365
Psp124BI	GAGCTC	2 cut(s)	15, 606
PspEI	GGTNACC	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	1452
PspPI	GGNCC	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	109, 205, 1053
RsaNI	GTAC	3 cut(s)	108, 204, 1052
RseI	CAYNNNNRTG	1 cut(s)	1448
SacI	GAGCTC	2 cut(s)	15, 606
SaqAI	TTAA	8 cut(s)	356, 525, 618, 840, 1154, 1187, 1319, 1457
SatI	GCNGC	4 cut(s)	352, 760, 810, 1385
Sau3AI	GATC	3 cut(s)	19, 880, 1215
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	4 cut(s)	182, 863, 1139, 1366
SduI	GDGCHC	3 cut(s)	15, 606, 1455
SfaNI	GCATC	3 cut(s)	582, 925, 1071
SfcI	CTRYAG	1 cut(s)	55
Sfr274I	CTCGAG	1 cut(s)	653
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	1448
SmlI	CTYRAG	4 cut(s)	501, 653, 773, 1338
SmoI	CTYRAG	4 cut(s)	501, 653, 773, 1338
SpeI	ACTAGT	1 cut(s)	1157
Sse9I	AATT	7 cut(s)	219, 248, 620, 862, 949, 1025, 1132
SseBI	AGGCCT	2 cut(s)	507, 1004
SsiI	CCGC	2 cut(s)	783, 810
SspMI	CTAG	4 cut(s)	446, 561, 1049, 1158
SstI	GAGCTC	2 cut(s)	15, 606
StuI	AGGCCT	2 cut(s)	507, 1004
TaaI	ACNGT	2 cut(s)	56, 793
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	296, 654, 921
TasI	AATT	7 cut(s)	219, 248, 620, 862, 949, 1025, 1132
TatI	WGTACW	2 cut(s)	203, 1051
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	5 cut(s)	71, 302, 325, 649, 958
Tru1I	TTAA	8 cut(s)	356, 525, 618, 840, 1154, 1187, 1319, 1457
Tru9I	TTAA	8 cut(s)	356, 525, 618, 840, 1154, 1187, 1319, 1457
TscAI	CASTG	1 cut(s)	722
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	3 cut(s)	351, 759, 1384
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	4 cut(s)	500, 573, 671, 714
TspRI	CASTG	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	2 cut(s)	248, 620
XbaI	TCTAGA	1 cut(s)	560
XceI	RCATGY	2 cut(s)	976, 1251
XhoI	CTCGAG	1 cut(s)	653
XmnI	GAANNNNTTC	2 cut(s)	1004, 1301
XspI	CTAG	4 cut(s)	446, 561, 1049, 1158
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.