Rh2BG287400

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014643
Physical Location & Seq
Reverse (-)
31761650 .. 31762183
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG287400.1

Sequence Viewer

Length: 534 bp
ATGCCTAAAAGAAGTATCTCATTAGTGAAGACCTTCTTGGGTGGCATGATCAAATTATCACCAAAGCTCATTGTCCTAGTACAAGAAGAGTTGTTCAACTTTTCCAAAATGCCATCAATGTTCTTTGCAGAGTTCTTCTCCGAGGCCCTCCATCACTACAATTCACTTTGCGACTCTCTCGTAACTAGTTTTAGTGGTGAGTATAAAATGGGGTTAAGACAGATAGAGAAAGAGGTATTGGGGATAAAGATTTTAGAAAGTGTCAGGCAGTTCCCATGTGAGAAGGAGGAAAGAATGTTGTGGCAAGTTTGTTTTGCTTCGTTGAAGGGCTTCGAGTCTATCCCTTTAAGTTCTTGTAATGTTTCTCAAGCCAAATACTTGGTGAGTCTGTTCAATAGGGGATATTGGGTGCAACATGAGAAGGGCAGGTTAGCTTTGTGTTGGAAATCAAGACCTTTGACAACAGCTTCCATTTGGGTGCCCTTAACAAAATCAAGGAAAACTATGTCAACCCCTTTTGATTTGTGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

177

Amino Acids

20.37

Weight (kDa)

9.21

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 7 - 159 4.9e-26 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 478
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 3 cut(s) 97, 325, 394
AhlI ACTAGT 1 cut(s) 185
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 221, 253
AluBI AGCT 3 cut(s) 67, 434, 467
AluI AGCT 3 cut(s) 67, 434, 467
AoxI GGCC 1 cut(s) 144
Asp700I GAANNNNTTC 2 cut(s) 32, 329
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 51, 209, 394
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 35
BccI CCATC 2 cut(s) 121, 159
BclI TGATCA 1 cut(s) 48
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 2 cut(s) 77, 186
BfuAI ACCTGC 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpuEI CTTGAG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 483
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 478
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 1 cut(s) 48
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 81
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 379
BsuRI GGCC 1 cut(s) 146
BveI ACCTGC 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 80
CviAII CATG 3 cut(s) 46, 276, 416
CviJI RGCY 6 cut(s) 67, 146, 330, 371, 434, 467
CviKI_1 RGCY 6 cut(s) 67, 146, 330, 371, 434, 467
CviQI GTAC 1 cut(s) 80
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 145
FaeI CATG 3 cut(s) 49, 279, 419
FaiI YATR 5 cut(s) 47, 204, 277, 417, 506
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 3 cut(s) 45, 275, 415
FbaI TGATCA 1 cut(s) 48
FspBI CTAG 2 cut(s) 77, 186
HaeIII GGCC 1 cut(s) 146
Hin1II CATG 3 cut(s) 49, 279, 419
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 3 cut(s) 173, 335, 385
HphI GGTGA 3 cut(s) 51, 209, 394
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 450
Hpy8I GTNNAC 1 cut(s) 510
HpyAV CCTTC 4 cut(s) 43, 277, 319, 415
HpyCH4V TGCA 2 cut(s) 128, 412
Hsp92II CATG 3 cut(s) 49, 279, 419
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 250, 412
MaeI CTAG 2 cut(s) 77, 186
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 3 cut(s) 40, 98, 127
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 2 cut(s) 53, 160
MlyI GAGTC 3 cut(s) 167, 344, 394
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 4 cut(s) 136, 158, 226, 280
MroXI GAANNNNTTC 2 cut(s) 32, 329
MseI TTAA 3 cut(s) 215, 347, 485
MslI CAYNNNNRTG 1 cut(s) 476
NdeII GATC 1 cut(s) 48
NlaIII CATG 3 cut(s) 49, 279, 419
NlaIV GGNNCC 1 cut(s) 480
PdmI GAANNNNTTC 2 cut(s) 32, 329
PleI GAGTC 3 cut(s) 167, 343, 393
PpsI GAGTC 3 cut(s) 167, 343, 393
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 3 cut(s) 215, 347, 485
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 3 cut(s) 167, 344, 394
SduI GDGCHC 1 cut(s) 483
SetI ASST 7 cut(s) 35, 69, 237, 431, 436, 457, 469
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 2 cut(s) 53, 160
SspMI CTAG 2 cut(s) 77, 186
TaqI TCGA 1 cut(s) 333
TasI AATT 2 cut(s) 53, 160
TatI WGTACW 1 cut(s) 79
Tru1I TTAA 3 cut(s) 215, 347, 485
Tru9I TTAA 3 cut(s) 215, 347, 485
XmnI GAANNNNTTC 2 cut(s) 32, 329
XspI CTAG 2 cut(s) 77, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.