Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003729.1

Orthogroup ID

OG0014643

Physical Location & Seq

Genomic Coordinates Forward (+)

47592 .. 49085

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003729.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

atggaagttgagctcattgatcacccattcaacccgagctacgacctctatgactgtagatttgaatctgattcttccttccaaacatcagatttatttactccttgtaccaccaatgttgatcaaaactcggaccacgaaagcctcaacagattgctccaaatagaatcacatctcatggacatagactcgtctatcagcagtggaagtgatgcaatcggtcttgatggtgttgttgatagtgaattcgcttcttacataagtgaagaagcaccagaaaatgtccatgtttcgacagaaggcaattcccttttgaaggagattcagatggatttgctggaagagagcagcttaactgaacttttattcgcaggatctgaagctgttgaggcacagaactgggtttttgcttcaaatataatcgcaaagctcaaaactcttctttccggtagcgaaaatggagacaactcgttcaacaaattggccacgttcttcactcaaggccttcattacaagaccattaactctattgaagttccccatgagccagctgtttctagaaacacagacacaatgtcttcatttcagatgctccaagagctctctccttttgttaagttttcgcatttcacagccaaccaagcaattctcgaggccacacaagaggatgaggacattcatgtcattgactttgacatcgtggagggcagccagtggccttcattgatggttgaccttgcaatgaggaaaggtcgccgctgtgcttctctcaaggtaaccgccatcacagttgaccagcaaagcgccgctcttgctcaacaaactggaagaaggcttaaagagttctcagagtctatcaatttgttgtttatttttgatcagatgatgatggccacagaagaagattttgctaaaatcgaagttgttgctgatgcagtagtagccaattgcatgattcaccagcttcacatgcctaaaagaagtatctcattagtgaaggccttcttgggtggcatgagcaaattatcgcctaaactcattgtcctagtacaagaagagttgttcaacttttccaaaatgccatcaatggtctttgcagagttcttctcggaggctctccatcactacaactcgctttgcgactctcttgtaactagttttagtggtgagtataaaatggggttaagacagatagagaaagagattttggggatcaagattttagaaagtgtcaggcagttcccatgtgagaaggaggatagaatgctgtgggaagattgttttacttcgttgaagggcttcaagtctatccctataagttcttgtaatgtttctcaagcaaaatacttggtgagtcttttcaataggggatattgggtgcagcatgagaagggcaggttagctttgtgttggaaatcaaggcctttgacaacagcttccttttgggtgcccttaacttacaaaatcaaggaaaactatgtcaaccccttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

497

Amino Acids

56.14

Weight (kDa)

4.84

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23430
malus_domestica	MD01G1002300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118791 RchiOBHm_Chr2g0118801
rosa_laevigata	RLG00000018421
rosa_multiflora	Rmu_sc0001814.1_g000020 Rmu_sc0003729.1_g000009
rosa_roxburghii	Rroxscaffold_2G00124720 Rroxscaffold_2G00125180
rosa_rugosa	Rorug02G0218600
rosa_samantha	Rh2AG275700 Rh2BG287400 Rh2BG287500 Rh2DG282700 Rh2DG282800 Rh2DG301900
rosa_wichuraiana	Rw2G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	1386
AccB1I	GGYRCC	1 cut(s)	1447
AccBSI	CCGCTC	1 cut(s)	809
AciI	CCGC	3 cut(s)	757, 780, 807
AclWI	GGATC	2 cut(s)	382, 1220
AcoI	YGGCCR	2 cut(s)	483, 891
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	109, 1050
AfiI	CCNNNNNNNGG	1 cut(s)	316
AhdI	GACNNNNNGTC	1 cut(s)	574
AhlI	ACTAGT	1 cut(s)	1154
AjuI	GAANNNNNNNTTGG	4 cut(s)	989, 1021, 1190, 1222
Alw21I	GWGCWC	2 cut(s)	15, 603
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	382, 1220
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	2 cut(s)	34, 650
AoxI	GGCC	7 cut(s)	483, 502, 654, 716, 891, 999, 1421
ApeKI	GCWGC	3 cut(s)	348, 708, 1381
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	2 cut(s)	1001, 1298
AspLEI	GCGC	1 cut(s)	806
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	4 cut(s)	14, 950, 1178, 1363
AvaI	CYCGRG	2 cut(s)	34, 650
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	1452
BalI	TGGCCA	2 cut(s)	485, 893
BanI	GGYRCC	1 cut(s)	1447
BanII	GRGCYC	2 cut(s)	15, 603
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	15, 603
BbvI	GCAGC	3 cut(s)	360, 720, 1393
BccI	CCATC	7 cut(s)	221, 322, 721, 791, 883, 1090, 1128
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BclI	TGATCA	3 cut(s)	19, 121, 877
BcoDI	GTCTC	1 cut(s)	456
BcuI	ACTAGT	1 cut(s)	1154
BfaI	CTAG	3 cut(s)	558, 1046, 1155
BfmI	CTRYAG	1 cut(s)	55
BfoI	RGCGCY	1 cut(s)	807
BfuAI	ACCTGC	1 cut(s)	1386
BisI	GCNGC	5 cut(s)	349, 709, 757, 807, 1382
BlsI	GCNGC	5 cut(s)	350, 710, 758, 808, 1383
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	574
BmeT110I	CYCGRG	2 cut(s)	34, 650
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	1449
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	3 cut(s)	202, 579, 922
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	570
BplI	GAGNNNNNCTC	2 cut(s)	1091, 1123
BpuEI	CTTGAG	3 cut(s)	483, 755, 1320
BsaBI	GATNNNNATC	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	3 cut(s)	404, 712, 829
Bse3DI	GCAATG	1 cut(s)	747
Bse8I	GATNNNNATC	1 cut(s)	64
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	861
BseNI	ACTGG	3 cut(s)	404, 712, 829
BseSI	GKGCMC	1 cut(s)	1452
BseXI	GCAGC	3 cut(s)	360, 720, 1393
BsgI	GTGCAG	1 cut(s)	1400
BshFI	GGCC	7 cut(s)	485, 504, 656, 718, 893, 1001, 1423
BshNI	GGYRCC	1 cut(s)	1447
BsiHKAI	GWGCWC	2 cut(s)	15, 603
BsiHKCI	CYCGRG	2 cut(s)	34, 650
BsiSI	CCGG	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	1269
BsnI	GGCC	7 cut(s)	485, 504, 656, 718, 893, 1001, 1423
BsoBI	CYCGRG	2 cut(s)	34, 650
Bsp1286I	GDGCHC	3 cut(s)	15, 603, 1452
Bsp143I	GATC	5 cut(s)	19, 121, 374, 877, 1212
BspACI	CCGC	3 cut(s)	757, 780, 807
BspANI	GGCC	7 cut(s)	485, 504, 656, 718, 893, 1001, 1423
BspCNI	CTCAG	1 cut(s)	860
BspLI	GGNNCC	1 cut(s)	1449
BspMI	ACCTGC	1 cut(s)	1386
BspPI	GGATC	2 cut(s)	382, 1220
BspT107I	GGYRCC	1 cut(s)	1447
BsrBI	CCGCTC	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	3 cut(s)	404, 712, 829
BssMI	GATC	5 cut(s)	19, 121, 374, 877, 1212
Bst4CI	ACNGT	2 cut(s)	56, 790
Bst6I	CTCTTC	3 cut(s)	336, 444, 1050
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	847
BstEII	GGTNACC	1 cut(s)	775
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	673
BstH2I	RGCGCY	1 cut(s)	807
BstHHI	GCGC	1 cut(s)	806
BstKTI	GATC	5 cut(s)	22, 124, 377, 880, 1215
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	5 cut(s)	19, 121, 374, 877, 1212
BstMWI	GCNNNNNNNGC	6 cut(s)	389, 598, 641, 812, 941, 970
BstNSI	RCATGY	1 cut(s)	973
BstPI	GGTNACC	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	1452
BstV1I	GCAGC	3 cut(s)	360, 720, 1393
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	7 cut(s)	485, 504, 656, 718, 893, 1001, 1423
BtsCI	GGATG	1 cut(s)	673
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 719
BveI	ACCTGC	1 cut(s)	1386
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	806
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	108, 1049
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	9 cut(s)	178, 287, 542, 680, 952, 970, 1015, 1245, 1385
CviQI	GTAC	2 cut(s)	108, 1049
DdeI	CTNAG	1 cut(s)	847
DpnI	GATC	5 cut(s)	21, 123, 376, 879, 1214
DpnII	GATC	5 cut(s)	19, 121, 374, 877, 1212
DrdI	GACNNNNNNGTC	1 cut(s)	680
DriI	GACNNNNNGTC	1 cut(s)	574
DseDI	GACNNNNNNGTC	1 cut(s)	680
EaeI	YGGCCR	2 cut(s)	483, 891
Eam1104I	CTCTTC	3 cut(s)	336, 444, 1050
Eam1105I	GACNNNNNGTC	1 cut(s)	574
EarI	CTCTTC	3 cut(s)	336, 444, 1050
Ecl136II	GAGCTC	2 cut(s)	13, 601
Eco147I	AGGCCT	3 cut(s)	504, 1001, 1423
Eco24I	GRGCYC	2 cut(s)	15, 603
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	2 cut(s)	13, 601
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	2 cut(s)	34, 650
Eco91I	GGTNACC	1 cut(s)	775
EcoICRI	GAGCTC	2 cut(s)	13, 601
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	775
EcoRI	GAATTC	1 cut(s)	245
EcoT38I	GRGCYC	2 cut(s)	15, 603
FaeI	CATG	9 cut(s)	181, 290, 545, 683, 955, 973, 1018, 1248, 1388
FalI	AAGNNNNNCTT	2 cut(s)	989, 1021
FatI	CATG	9 cut(s)	177, 286, 541, 679, 951, 969, 1014, 1244, 1384
FbaI	TGATCA	3 cut(s)	19, 121, 877
Fnu4HI	GCNGC	5 cut(s)	349, 709, 757, 807, 1382
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	2 cut(s)	15, 603
Fsp4HI	GCNGC	5 cut(s)	349, 709, 757, 807, 1382
FspBI	CTAG	3 cut(s)	558, 1046, 1155
GlaI	GCGC	1 cut(s)	805
GluI	GCNGC	5 cut(s)	349, 709, 757, 807, 1382
HaeII	RGCGCY	1 cut(s)	807
HaeIII	GGCC	7 cut(s)	485, 504, 656, 718, 893, 1001, 1423
HapII	CCGG	1 cut(s)	447
HhaI	GCGC	1 cut(s)	806
Hin1II	CATG	9 cut(s)	181, 290, 545, 683, 955, 973, 1018, 1248, 1388
Hin6I	GCGC	1 cut(s)	804
HinP1I	GCGC	1 cut(s)	804
HincII	GTYRAC	3 cut(s)	733, 793, 1483
HindII	GTYRAC	3 cut(s)	733, 793, 1483
HinfI	GANTC	9 cut(s)	65, 71, 167, 188, 322, 851, 955, 1142, 1354
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	4 cut(s)	14, 950, 1178, 1363
Hpy166II	GTNNAC	3 cut(s)	733, 793, 1483
Hpy188I	TCNGA	9 cut(s)	70, 91, 133, 327, 379, 588, 850, 882, 1111
Hpy188III	TCNNGA	4 cut(s)	224, 558, 650, 1216
Hpy8I	GTNNAC	3 cut(s)	733, 793, 1483
HpyCH4III	ACNGT	2 cut(s)	56, 790
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	6 cut(s)	215, 740, 935, 951, 1097, 1381
HpyF10VI	GCNNNNNNNGC	6 cut(s)	389, 598, 641, 812, 941, 970
HpyF3I	CTNAG	1 cut(s)	847
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	9 cut(s)	181, 290, 545, 683, 955, 973, 1018, 1248, 1388
HspAI	GCGC	1 cut(s)	804
Ksp22I	TGATCA	3 cut(s)	19, 121, 877
Kzo9I	GATC	5 cut(s)	19, 121, 374, 877, 1212
LmnI	GCTCC	2 cut(s)	162, 597
Lsp1109I	GCAGC	3 cut(s)	360, 720, 1393
LweI	GCATC	3 cut(s)	202, 579, 922
MaeI	CTAG	3 cut(s)	558, 1046, 1155
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	775, 1150
MalI	GATC	5 cut(s)	21, 123, 376, 879, 1214
MbiI	CCGCTC	1 cut(s)	809
MboI	GATC	5 cut(s)	19, 121, 374, 877, 1212
MfeI	CAATTG	1 cut(s)	946
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	3 cut(s)	15, 603, 1452
MlsI	TGGCCA	2 cut(s)	485, 893
MluCI	AATT	7 cut(s)	245, 304, 479, 645, 859, 946, 1022
MluNI	TGGCCA	2 cut(s)	485, 893
MlyI	GAGTC	4 cut(s)	182, 860, 1136, 1363
MmeI	TCCRAC	1 cut(s)	1391
Mox20I	TGGCCA	2 cut(s)	485, 893
MroXI	GAANNNNTTC	2 cut(s)	1001, 1298
MscI	TGGCCA	2 cut(s)	485, 893
MseI	TTAA	6 cut(s)	353, 522, 615, 837, 1184, 1454
Msp20I	TGGCCA	2 cut(s)	485, 893
MspA1I	CMGCKG	2 cut(s)	551, 759
MspI	CCGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	946
Mva1269I	GAATGC	1 cut(s)	1269
MwoI	GCNNNNNNNGC	6 cut(s)	389, 598, 641, 812, 941, 970
NdeII	GATC	5 cut(s)	19, 121, 374, 877, 1212
NlaIII	CATG	9 cut(s)	181, 290, 545, 683, 955, 973, 1018, 1248, 1388
NlaIV	GGNNCC	1 cut(s)	1449
NspI	RCATGY	1 cut(s)	973
PaeR7I	CTCGAG	1 cut(s)	650
PceI	AGGCCT	3 cut(s)	504, 1001, 1423
PctI	GAATGC	1 cut(s)	1269
PdmI	GAANNNNTTC	2 cut(s)	1001, 1298
PfeI	GAWTC	5 cut(s)	65, 71, 167, 322, 955
PkrI	GCNGC	5 cut(s)	350, 710, 758, 808, 1383
PleI	GAGTC	4 cut(s)	182, 859, 1136, 1362
PpsI	GAGTC	4 cut(s)	182, 859, 1136, 1362
Psp124BI	GAGCTC	2 cut(s)	15, 603
PspEI	GGTNACC	1 cut(s)	775
PspN4I	GGNNCC	1 cut(s)	1449
PspPI	GGNCC	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	109, 1050
RsaNI	GTAC	2 cut(s)	108, 1049
SacI	GAGCTC	2 cut(s)	15, 603
SaqAI	TTAA	6 cut(s)	353, 522, 615, 837, 1184, 1454
SatI	GCNGC	5 cut(s)	349, 709, 757, 807, 1382
Sau3AI	GATC	5 cut(s)	19, 121, 374, 877, 1212
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	4 cut(s)	182, 860, 1136, 1363
SduI	GDGCHC	3 cut(s)	15, 603, 1452
SfaNI	GCATC	3 cut(s)	202, 579, 922
SfcI	CTRYAG	1 cut(s)	55
Sfr274I	CTCGAG	1 cut(s)	650
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	650
SmlI	CTYRAG	4 cut(s)	498, 650, 770, 1335
SmoI	CTYRAG	4 cut(s)	498, 650, 770, 1335
SpeI	ACTAGT	1 cut(s)	1154
Sse9I	AATT	7 cut(s)	245, 304, 479, 645, 859, 946, 1022
SseBI	AGGCCT	3 cut(s)	504, 1001, 1423
SsiI	CCGC	3 cut(s)	757, 780, 807
SspMI	CTAG	3 cut(s)	558, 1046, 1155
SstI	GAGCTC	2 cut(s)	15, 603
StuI	AGGCCT	3 cut(s)	504, 1001, 1423
TaaI	ACNGT	2 cut(s)	56, 790
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	3 cut(s)	293, 651, 918
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	7 cut(s)	245, 304, 479, 645, 859, 946, 1022
TatI	WGTACW	1 cut(s)	1048
TauI	GCSGC	2 cut(s)	759, 809
TfiI	GAWTC	5 cut(s)	65, 71, 167, 322, 955
Tru1I	TTAA	6 cut(s)	353, 522, 615, 837, 1184, 1454
Tru9I	TTAA	6 cut(s)	353, 522, 615, 837, 1184, 1454
TscAI	CASTG	2 cut(s)	208, 719
TseI	GCWGC	3 cut(s)	348, 708, 1381
TspDTI	ATGAA	4 cut(s)	497, 570, 668, 711
TspRI	CASTG	2 cut(s)	208, 719
VpaK11BI	GGWCC	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	245
XbaI	TCTAGA	1 cut(s)	557
XceI	RCATGY	1 cut(s)	973
XhoI	CTCGAG	1 cut(s)	650
XmnI	GAANNNNTTC	2 cut(s)	1001, 1298
XspI	CTAG	3 cut(s)	558, 1046, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.