RchiOBHm_Chr2g0118791

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014643
Physical Location & Seq
Reverse (-)
30984898 .. 30985573
676 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49154

Sequence Viewer

Length: 624 bp
ATGTTTTGCACACCCCTAGGAAGAAGGCTTAAAGAGTTCTCAGAGTCTATCAATTTGTTATTTATTTTTGATCAGATGATGATGGCCACAGAAGAAGATTTTGCTAAAATCGAAGTTGTTGCTGATGCAATAGTAGCCAATTGCATGATTCACCAGCTTCACATGCCTAGCAGAAGTATCTCATTAATGAAGGCCTTCTTGGGTGGCATGAGCAAATTATCACCTAAACTCATTGTCTTAGTACAAGAAGAGTTGTTCAACTTTTCCAAAAAGCCATCAATGGTCTTTGCAGAGTTCTTCTCGGAGGCTCTCCATCACTACAATTCGCTTTGCGACTTTCTTGTAACTAGTTTTAGTGGTGAGTATAAAATGGGGTTAAGACAGATAGAGAAAGAGGTTTTGGGGATCAAGATTTTAGAAAGTGTCAGACAGTTCCCATGTGAGAAGGAGGATAGAATGTTGTGGGAAGATTGTTTTGCTTCGTTGAAGGGCTTCAAGGGATATTGGGTGCAGCATGAGAAGGGCAGGTTAGCTTTGTGTTGGAAATCAAGACCTTTGACAACAGCTTCCATTTGGGTGCCCTTAACTTACAAAATCAAGAAAAACTATGTCAACCCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

207

Amino Acids

24.03

Weight (kDa)

8.48

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 6 - 159 4.4e-15 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 577
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 84
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 3 cut(s) 259, 487, 496
AhlI ACTAGT 1 cut(s) 347
AjuI GAANNNNNNNTTGG 4 cut(s) 182, 214, 383, 415
AluBI AGCT 3 cut(s) 157, 533, 566
AluI AGCT 3 cut(s) 157, 533, 566
AlwI GGATC 1 cut(s) 413
AoxI GGCC 2 cut(s) 84, 192
ApeKI GCWGC 1 cut(s) 511
AseI ATTAAT 1 cut(s) 185
Asp700I GAANNNNTTC 2 cut(s) 194, 491
AspA2I CCTAGG 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 143, 213, 371
AvrII CCTAGG 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 582
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 523
BccI CCATC 3 cut(s) 76, 283, 321
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BclI TGATCA 1 cut(s) 70
BcuI ACTAGT 1 cut(s) 347
BfaI CTAG 3 cut(s) 17, 168, 348
BfuAI ACCTGC 1 cut(s) 516
BisI GCNGC 1 cut(s) 512
BlnI CCTAGG 1 cut(s) 16
BlsI GCNGC 1 cut(s) 513
BmiI GGNNCC 1 cut(s) 579
BmsI GCATC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BsaJI CCNNGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 1 cut(s) 523
BsgI GTGCAG 1 cut(s) 530
BshFI GGCC 2 cut(s) 86, 194
BshNI GGYRCC 1 cut(s) 577
BsnI GGCC 2 cut(s) 86, 194
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 2 cut(s) 70, 405
BspANI GGCC 2 cut(s) 86, 194
BspCNI CTCAG 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 577
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 70, 405
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 40, 238
BstKTI GATC 2 cut(s) 73, 408
BstMBI GATC 2 cut(s) 70, 405
BstMWI GCNNNNNNNGC 2 cut(s) 134, 163
BstNSI RCATGY 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 523
BsuRI GGCC 2 cut(s) 86, 194
BveI ACCTGC 1 cut(s) 516
Csp6I GTAC 1 cut(s) 242
CviAII CATG 5 cut(s) 145, 163, 208, 438, 515
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 40, 238
DpnI GATC 2 cut(s) 72, 407
DpnII GATC 2 cut(s) 70, 405
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 5 cut(s) 148, 166, 211, 441, 518
FaiI YATR 7 cut(s) 146, 164, 209, 366, 439, 516, 609
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 5 cut(s) 144, 162, 207, 437, 514
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 3 cut(s) 17, 168, 348
GluI GCNGC 1 cut(s) 512
HaeIII GGCC 2 cut(s) 86, 194
Hin1II CATG 5 cut(s) 148, 166, 211, 441, 518
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 2 cut(s) 44, 148
HphI GGTGA 3 cut(s) 143, 213, 371
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 4 cut(s) 43, 75, 304, 428
Hpy188III TCNNGA 3 cut(s) 409, 549, 598
Hpy8I GTNNAC 1 cut(s) 613
HpyAV CCTTC 6 cut(s) 18, 184, 205, 439, 481, 514
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4V TGCA 5 cut(s) 9, 128, 144, 290, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 163
HpyF3I CTNAG 2 cut(s) 40, 238
Hsp92II CATG 5 cut(s) 148, 166, 211, 441, 518
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 405
LpnPI CCDG 2 cut(s) 167, 511
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 115
MaeI CTAG 3 cut(s) 17, 168, 348
MaeIII GTNAC 1 cut(s) 343
MalI GATC 2 cut(s) 72, 407
MboI GATC 2 cut(s) 70, 405
MboII GAAGA 6 cut(s) 33, 104, 107, 260, 289, 479
MfeI CAATTG 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 4 cut(s) 52, 139, 215, 322
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 3 cut(s) 298, 388, 442
Mox20I TGGCCA 1 cut(s) 86
MroXI GAANNNNTTC 2 cut(s) 194, 491
MscI TGGCCA 1 cut(s) 86
MseI TTAA 4 cut(s) 30, 185, 377, 584
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 86
MunI CAATTG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 134, 163
NdeII GATC 2 cut(s) 70, 405
NlaIII CATG 5 cut(s) 148, 166, 211, 441, 518
NlaIV GGNNCC 1 cut(s) 579
NspI RCATGY 1 cut(s) 166
PceI AGGCCT 1 cut(s) 194
PdmI GAANNNNTTC 2 cut(s) 194, 491
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PshBI ATTAAT 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 579
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 4 cut(s) 30, 185, 377, 584
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 2 cut(s) 70, 405
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 582
SetI ASST 7 cut(s) 159, 226, 399, 530, 535, 556, 568
SfaNI GCATC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 347
Sse9I AATT 4 cut(s) 52, 139, 215, 322
SseBI AGGCCT 1 cut(s) 194
SspMI CTAG 3 cut(s) 17, 168, 348
StuI AGGCCT 1 cut(s) 194
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 111
TasI AATT 4 cut(s) 52, 139, 215, 322
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 4 cut(s) 30, 185, 377, 584
Tru9I TTAA 4 cut(s) 30, 185, 377, 584
TseI GCWGC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 203
VspI ATTAAT 1 cut(s) 185
XceI RCATGY 1 cut(s) 166
XmaJI CCTAGG 1 cut(s) 16
XmnI GAANNNNTTC 2 cut(s) 194, 491
XspI CTAG 3 cut(s) 17, 168, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.