Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003599

Physical Location & Seq

Genomic Coordinates Reverse (-)

16280724 .. 16286418

Gene Structure 5695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24430.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGGAGTACCAGTTTTCGACTAGGCAGGGGAAGGATCAGGGGTGTTCGTCTTCTGGAGGTGCTGCGGTGGAGGGTCTGGTGGGGCTGGATGGTGAAGCGAGGAACGTGATTTCAGAGGATATATTTAACAACATTGCTGAGCTTATGAATTTTGATACTTATGCTGGGTGGTGCAGCAGCCCGGGGACAATGGAGCAGATTGGAGTGTCGTATCCGTCCGTGAGTTATGCGCCTTTGGATGCATTGAGTTTTGCGCAACAGAACGGTGGAGCATTGGCTGTGGCTGAAGATGGTGGGTCTTCTTTTGATTGTTGTGATAAGATTGGGTTTCAGCAAATGGACACCACCCAGTTCGGGGCGTCAACTGATTTCAACCACGCTCATGATGCAGCTGCTAAACTGAAGAATGGTTTTGTTCAACAGAATAATATCATGGATACGGCAGACTATGTGATCTCCAGACCACATGGATGGTCACTTAATGAGAAGATGCTAAAGGCGCTGTCCTTGTTTAAGGAGTCTTCTGGTGGGGGAATTTTGGCGCAAGTATGGGTTCCAATGAAGCATGGTGATCACTCCTTCTTAAGCACTTGCGAACAGCCCTATTTGCTTGACCATGTTCTTGCTGGGTATCGGGAAGTGTCAAGGATGTTTACATTCTCTGCAGAGGAAAAGCAGGGTTCTGTCCTGGGGCTTCCCGGCCGTGTATTTGTCTCCAAAGTTCCAGAGTGGACATCAAATGTTAGCTATTACAACAAGGCCGAGTACCTGAGGGTGGAACATGCTGCTGATCATCAGGTCCGTGGATCAATTGCCCTGCCAGTTTTTGATATGAACTCTGAAATGTCATGCTGTGCTGTGCTGGAACTTGTCAGTACAAAAGATAAACTCAACTTTGATGCAGAGATGGAGATAGTTTGTAATGCCCTCCAGGCTGTGAAGTTGAGGACCACTACGCCTCCACGAATTCTTCCCCATTGCCTCTCAAGGAACCAAAGAGCTGCTTTAACTGAAATTACTGATGTCTTACGAGCTGTGTGTCATGCGCATACATTGCCCTTGGCTCTCACCTGGATTCCTTGTTGCTACTCTGATGGTGATGGAGAGGGAATTAGAAGAGTACGTGTTCGAGAGGGTATTACAAATTCAAATGAAAAATGCATACTATGCGTTGAAGAAACAGCTTGTTATGTAAATGATAGAACAATGCAAGGCTTTGTGCATGCATGTGCAGAACATCATCTGGAGGAAGGAAATGGTATTGCTGGGAAAGCACTTCAATCAAATCACCCCTTCTTCATTCATGATGTTAAGGTGTATGACATATATGACTATCCACTAGTTCATCATGCACGCCGGTATGGTTTGAACGCTGCTGTTGCAATCAGATTGAGGAGCACCTACACCGGTGACGATGACTATATTTTAGAGTTTTTTCTGCCTGTCAATATGAAGGGCAGTTCAGAACAGCAACTTTTGTTAAACAACCTCTCGGGCACCATGCAGAGAATTTGTAAGAGTTTGAGGACTGTATCAGATGCAGAATTGACTGGGGTAGAAGGCTCCGACAATGGGTTTCAAAGGGAGGCAATCCCAAATACCCCATCAATCCCCAGGAGAAATTCTCAGTCACCGTCATCAGATAGTGAAATGAAGTCAGCTGAGAATATACCCTCTAATGTATTCAATAGAAAAGATGGTGGAGTTGAAGTAGATTTTCCTCCTGAACATGCACCAAATGGATCAAGAAGGCAGGCGGAAAAAAAGCGTAGTACAGCAGAGAAAAATGTGAGCTTGAGTGTTCTACAGCAATACTTCTCTGGGAGTCTCAAGGATGCTGCAAAAAGCATCGGAGTCTGCCCCACTACGTTAAAAAGGATCTGCAGACAACACGGGATTTCTAGATGGCCATCTCGTAAGATAAATAAGGTGAACCGTTCCCTGAAGAAAATACAAACTGTACTTGATTCTGTTCAAGGGGTGGAAGGAGGATTGAAGTATGACCCAACCACTGGGGGGTTTGTGGCTACTGGGTCCATCATCCAAGAATTTGATGCTCAACAAAATCTATTCTTTCCCGAGAAGAATTTGCCTGCTCAGAATATTGTTCCTGTTCCCCAATATCCAGTTTCAGTACCTTCAATGTCTTGTAAAGATGGTGAGCGTTTTGAAATTAAGTTAGAAGAAGATGGCTGTTGCATGAATGGAGGTACGCCGATTCCAACTGCTCATCAGGAAAAGGAAGAGGTAAAAAAACAGAATATCTCTGTGGTTGATTGTAGTATGAATTCCAAGCCGATTGCAATTGATTTTGGGTCATGCCAGCCGACTGACCATGACACCATGCCTCACAATTGTCCTGAAACTGATTTTGGGGTCTCTTATCTGGTAAAAGAAGTCAATCGATGGGGTCAGAGCAACGACAGTCTAACATTAGAGAGTTCTGGCTGCCATTTTGTGCCTCAGAGCTCAAGCTCCTTTGTTGTTGCTGATGAGATGGACATAGGGGTAGACAGAGATGGGGGGAATGTTAATTATAACCAGCCTACTTCTTCAAGCATGACAGACTCGTCGAATAGTTCTGGTTCAATGATGCATGGCTGTTCCTCAAGTTCTCAGAGCTTTGAGGAGCGAAAGTACCAAGTCAAAGAAACAAATGTTGAGATTGGATCAAAAATCATTGTGAAAGCTACATATAAAGAAGATACGATCAGGTTCAAGTTTGAGCCTTCTGGTGGGTGCCTTAAACTGTATGAAGAAGTTGCAAAGAGGTTGAAGTTGCAAGATGGAACTTTCCAGCTCAAGTACTTGGATGATGAACAGGAATGGGTGATGTTAGTAAGTGATGCAGATTTGCGGGAGTGTCTTGAGATATTGGATGACATTGGGACACATAGTGTTAAGTTTATGGTTCGTGATATACCTTTCGGTGTAAGCAGTTCCGGCAGTAGCAATTGTTTTCTGGCCGGGGGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

993

Amino Acids

109.18

Weight (kDa)

5.36

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	327 - 509	2.8e-76	NLP protein GAF domain
RWP-RK	PF02042	597 - 643	2.6e-22	RWP-RK domain
PB1	PF00564	894 - 972	1.3e-18	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT3G59580 AT3G59580 AT3G59580
fragaria_vesca	FvH4_1g24430 FvH4_1g24430 FvH4_1g24430
malus_domestica	MD04G1116200.v1.1 MD12G1131800.v1.1
prunus_persica	Prupe.1G200100_v2.0.a1
pyrus_communis	pycom04g10620 pycom12g12770
rosa_chinensis	RchiOBHm_Chr2g0121311
rosa_laevigata	RLG00000018617
rosa_multiflora	Rmu_sc0000079.1_g000028 Rmu_sc0000315.1_g000101
rosa_roxburghii	Rroxscaffold_2G00122460
rosa_rugosa	Rorug02G0233300 Rorug02G0233400 Rorug02G0233500
rosa_samantha	Rh2AG290100 Rh2BG301000 Rh2CG279700 Rh2DG314900
rosa_wichuraiana	Rw2G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2538
AasI	GACNNNNNNGTC	1 cut(s)	2569
Acc16I	TGCGCA	2 cut(s)	255, 1047
AccB1I	GGYRCC	2 cut(s)	1496, 2739
AccB7I	CCANNNNNTGG	1 cut(s)	2012
AccI	GTMKAC	1 cut(s)	2511
AciI	CCGC	3 cut(s)	65, 1757, 2857
AclWI	GGATC	5 cut(s)	42, 814, 1750, 1886, 2677
AcoI	YGGCCR	3 cut(s)	700, 1907, 2964
AcsI	RAATTY	9 cut(s)	148, 534, 966, 1144, 1509, 1621, 2048, 2086, 2287
AcuI	CTGAAG	3 cut(s)	306, 422, 1964
AcyI	GRCGYC	1 cut(s)	359
AdeI	CACNNNGTG	1 cut(s)	2897
AfiI	CCNNNNNNNGG	7 cut(s)	354, 355, 775, 1572, 2012, 2016, 2735
AflII	CTTAAG	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	1123
AgeI	ACCGGT	1 cut(s)	1406
AhlI	ACTAGT	1 cut(s)	1339
AjnI	CCWGG	4 cut(s)	687, 930, 1070, 1613
AjuI	GAANNNNNNNTTGG	2 cut(s)	2355, 2387
Alw21I	GWGCWC	2 cut(s)	1400, 2471
Alw26I	GTCTC	3 cut(s)	718, 1832, 2383
AlwI	GGATC	5 cut(s)	42, 814, 1750, 1886, 2677
Ama87I	CYCGRG	3 cut(s)	181, 1492, 2078
AoxI	GGCC	4 cut(s)	700, 759, 1907, 2964
ApoI	RAATTY	9 cut(s)	148, 534, 966, 1144, 1509, 1621, 2048, 2086, 2287
AsiGI	ACCGGT	1 cut(s)	1406
AspLEI	GCGC	5 cut(s)	232, 256, 502, 544, 1048
AspS9I	GGNCC	3 cut(s)	799, 948, 2034
AsuC2I	CCSGG	4 cut(s)	182, 183, 699, 2968
AvaI	CYCGRG	3 cut(s)	181, 1492, 2078
AvaII	GGWCC	3 cut(s)	799, 948, 2034
AxyI	CCTNAGG	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	1499
BalI	TGGCCA	1 cut(s)	1909
BanI	GGYRCC	2 cut(s)	1496, 2739
BanII	GRGCYC	1 cut(s)	2471
BbsI	GAAGAC	3 cut(s)	42, 291, 513
Bbv12I	GWGCWC	2 cut(s)	1400, 2471
BceAI	ACGGC	2 cut(s)	456, 687
BciT130I	CCWGG	4 cut(s)	689, 932, 1072, 1615
BciVI	GTATCC	2 cut(s)	222, 430
BclI	TGATCA	2 cut(s)	571, 790
BcnI	CCSGG	4 cut(s)	182, 183, 699, 2968
BcoDI	GTCTC	3 cut(s)	718, 1832, 2383
BcuI	ACTAGT	1 cut(s)	1339
BfaI	CTAG	3 cut(s)	21, 1340, 1902
BfmI	CTRYAG	3 cut(s)	663, 1805, 1882
BfoI	RGCGCY	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	583
BfuI	GTATCC	2 cut(s)	222, 430
BglI	GCCNNNNNGGC	1 cut(s)	932
BlpI	GCTNAGC	1 cut(s)	138
BmcAI	AGTACT	1 cut(s)	2807
Bme1390I	CCNGG	8 cut(s)	182, 183, 689, 699, 932, 1072, 1615, 2968
Bme18I	GGWCC	3 cut(s)	799, 948, 2034
BmeT110I	CYCGRG	3 cut(s)	181, 1492, 2078
BmgT120I	GGNCC	3 cut(s)	799, 948, 2034
BmiI	GGNNCC	6 cut(s)	555, 992, 1498, 1564, 2035, 2741
BmrFI	CCNGG	8 cut(s)	182, 183, 689, 699, 932, 1072, 1615, 2968
BmrI	ACTGGG	4 cut(s)	343, 1560, 2022, 2040
BmuI	ACTGGG	4 cut(s)	343, 1560, 2022, 2040
BpiI	GAAGAC	3 cut(s)	42, 291, 513
BplI	GAGNNNNNCTC	2 cut(s)	1609, 1641
BpmI	CTGGAG	4 cut(s)	75, 442, 914, 1265
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	7 cut(s)	970, 1814, 1816, 2455, 2593, 2786, 2888
BpuMI	CCSGG	4 cut(s)	182, 183, 699, 2968
Bsa29I	ATCGAT	1 cut(s)	2404
BsaAI	YACGTR	1 cut(s)	1124
BsaBI	GATNNNNATC	1 cut(s)	1909
BsaHI	GRCGYC	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	2383
BsaJI	CCNNGG	7 cut(s)	181, 182, 688, 802, 1059, 1613, 2967
BsaWI	WCCGGW	1 cut(s)	1406
BsaXI	ACNNNNNCTCC	7 cut(s)	26, 943, 973, 1695, 1725, 2621, 2651
Bsc4I	CCNNNNNNNGG	7 cut(s)	354, 355, 775, 1572, 2012, 2016, 2735
Bse118I	RCCGGY	2 cut(s)	1356, 1406
Bse1I	ACTGG	7 cut(s)	10, 349, 821, 1555, 2017, 2035, 2126
Bse21I	CCTNAGG	1 cut(s)	770
Bse3DI	GCAATG	3 cut(s)	132, 976, 1052
Bse8I	GATNNNNATC	1 cut(s)	1909
BseBI	CCWGG	4 cut(s)	689, 932, 1072, 1615
BseCI	ATCGAT	1 cut(s)	2404
BseDI	CCNNGG	7 cut(s)	181, 182, 688, 802, 1059, 1613, 2967
BseGI	GGATG	8 cut(s)	94, 244, 476, 654, 1840, 2040, 2818, 2884
BseJI	GATNNNNATC	1 cut(s)	1909
BseLI	CCNNNNNNNGG	7 cut(s)	354, 355, 775, 1572, 2012, 2016, 2735
BseMI	GCAATG	3 cut(s)	132, 976, 1052
BseMII	CTCAG	7 cut(s)	129, 761, 1640, 1653, 2111, 2477, 2630
BseNI	ACTGG	7 cut(s)	10, 349, 821, 1555, 2017, 2035, 2126
BseRI	GAGGAG	2 cut(s)	1408, 2642
BseSI	GKGCMC	1 cut(s)	1499
BseX3I	CGGCCG	1 cut(s)	700
BseYI	CCCAGC	3 cut(s)	164, 626, 1265
BsgI	GTGCAG	2 cut(s)	193, 1251
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	4 cut(s)	702, 761, 1909, 2966
BshNI	GGYRCC	2 cut(s)	1496, 2739
BshTI	ACCGGT	1 cut(s)	1406
BshVI	ATCGAT	1 cut(s)	2404
BsiEI	CGRYCG	1 cut(s)	703
BsiHKAI	GWGCWC	2 cut(s)	1400, 2471
BsiHKCI	CYCGRG	3 cut(s)	181, 1492, 2078
BsiSI	CCGG	6 cut(s)	182, 699, 1357, 1407, 2943, 2967
BslFI	GGGAC	2 cut(s)	199, 2902
BslI	CCNNNNNNNGG	7 cut(s)	354, 355, 775, 1572, 2012, 2016, 2735
BsmAI	GTCTC	3 cut(s)	718, 1832, 2383
BsmFI	GGGAC	2 cut(s)	199, 2902
BsnI	GGCC	4 cut(s)	702, 761, 1909, 2966
Bso31I	GGTCTC	1 cut(s)	2383
BsoBI	CYCGRG	3 cut(s)	181, 1492, 2078
Bsp1286I	GDGCHC	3 cut(s)	1400, 1499, 2471
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	3 cut(s)	65, 1757, 2857
BspANI	GGCC	4 cut(s)	702, 761, 1909, 2966
BspCNI	CTCAG	7 cut(s)	130, 762, 1639, 1654, 2110, 2476, 2629
BspDI	ATCGAT	1 cut(s)	2404
BspHI	TCATGA	2 cut(s)	382, 1303
BspLI	GGNNCC	6 cut(s)	555, 992, 1498, 1564, 2035, 2741
BspMAI	CTGCAG	2 cut(s)	667, 1886
BspPI	GGATC	5 cut(s)	42, 814, 1750, 1886, 2677
BspT107I	GGYRCC	2 cut(s)	1496, 2739
BspTI	CTTAAG	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	2383
BsrDI	GCAATG	3 cut(s)	132, 976, 1052
BsrFI	RCCGGY	2 cut(s)	1356, 1406
BsrI	ACTGG	7 cut(s)	10, 349, 821, 1555, 2017, 2035, 2126
BssAI	RCCGGY	2 cut(s)	1356, 1406
BssECI	CCNNGG	7 cut(s)	181, 182, 688, 802, 1059, 1613, 2967
BssNI	GRCGYC	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	1059
Bst2UI	CCWGG	4 cut(s)	689, 932, 1072, 1615
Bst4CI	ACNGT	7 cut(s)	266, 1531, 1635, 1937, 1960, 2426, 2751
Bst6I	CTCTTC	2 cut(s)	1111, 2238
BstACI	GRCGYC	1 cut(s)	359
BstAFI	CTTAAG	1 cut(s)	583
BstAPI	GCANNNNNTGC	2 cut(s)	1054, 1167
BstBAI	YACGTR	1 cut(s)	1124
BstC8I	GCNNGC	5 cut(s)	1224, 1354, 1755, 2094, 2324
BstDEI	CTNAG	7 cut(s)	138, 770, 1626, 1662, 2097, 2463, 2616
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	8 cut(s)	94, 244, 476, 654, 1840, 2040, 2818, 2884
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	5 cut(s)	232, 256, 502, 544, 1048
BstMAI	GTCTC	3 cut(s)	718, 1832, 2383
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	9 cut(s)	386, 499, 607, 932, 1054, 1167, 1271, 1379, 2943
BstNI	CCWGG	4 cut(s)	689, 932, 1072, 1615
BstNSI	RCATGY	4 cut(s)	785, 1226, 1230, 1733
BstSCI	CCNGG	8 cut(s)	180, 181, 687, 697, 930, 1070, 1613, 2966
BstSFI	CTRYAG	3 cut(s)	663, 1805, 1882
BstSLI	GKGCMC	1 cut(s)	1499
BstV2I	GAAGAC	3 cut(s)	42, 291, 513
BstX2I	RGATCY	1 cut(s)	1878
BstXI	CCANNNNNNTGG	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	1878
BstZI	CGGCCG	1 cut(s)	700
Bsu15I	ATCGAT	1 cut(s)	2404
Bsu36I	CCTNAGG	1 cut(s)	770
BsuI	GTATCC	2 cut(s)	222, 430
BsuRI	GGCC	4 cut(s)	702, 761, 1909, 2966
BsuTUI	ATCGAT	1 cut(s)	2404
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	8 cut(s)	94, 244, 476, 654, 1840, 2040, 2818, 2884
BtsIMutI	CAGTG	1 cut(s)	2010
Cac8I	GCNNGC	5 cut(s)	1224, 1354, 1755, 2094, 2324
CciI	TCATGA	2 cut(s)	382, 1303
CfoI	GCGC	5 cut(s)	232, 256, 502, 544, 1048
Cfr10I	RCCGGY	2 cut(s)	1356, 1406
Cfr13I	GGNCC	3 cut(s)	799, 948, 2034
Cfr9I	CCCGGG	1 cut(s)	181
ClaI	ATCGAT	1 cut(s)	2404
CseI	GACGC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	1406
DdeI	CTNAG	7 cut(s)	138, 770, 1626, 1662, 2097, 2463, 2616
DraIII	CACNNNGTG	1 cut(s)	2897
DrdI	GACNNNNNNGTC	1 cut(s)	2569
DseDI	GACNNNNNNGTC	1 cut(s)	2569
EaeI	YGGCCR	3 cut(s)	700, 1907, 2964
EagI	CGGCCG	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	1111, 2238
EarI	CTCTTC	2 cut(s)	1111, 2238
EciI	GGCGGA	1 cut(s)	1772
Ecl136II	GAGCTC	1 cut(s)	2469
EclXI	CGGCCG	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	1059
Eco24I	GRGCYC	1 cut(s)	2471
Eco31I	GGTCTC	1 cut(s)	2383
Eco47I	GGWCC	3 cut(s)	799, 948, 2034
Eco52I	CGGCCG	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	2469
Eco57I	CTGAAG	3 cut(s)	306, 422, 1964
Eco81I	CCTNAGG	1 cut(s)	770
Eco88I	CYCGRG	3 cut(s)	181, 1492, 2078
EcoICRI	GAGCTC	1 cut(s)	2469
EcoRI	GAATTC	2 cut(s)	966, 2287
EcoRII	CCWGG	4 cut(s)	687, 930, 1070, 1613
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	4 cut(s)	244, 1163, 1228, 2598
EcoT38I	GRGCYC	1 cut(s)	2471
ErhI	CCWWGG	1 cut(s)	1059
FalI	AAGNNNNNCTT	2 cut(s)	988, 1020
FaqI	GGGAC	2 cut(s)	199, 2902
FauI	CCCGC	1 cut(s)	2850
FbaI	TGATCA	2 cut(s)	571, 790
FblI	GTMKAC	1 cut(s)	2511
FokI	GGATG	8 cut(s)	101, 251, 483, 661, 1847, 2027, 2825, 2891
FriOI	GRGCYC	1 cut(s)	2471
FspAI	RTGCGCAY	1 cut(s)	1047
FspBI	CTAG	3 cut(s)	21, 1340, 1902
FspI	TGCGCA	2 cut(s)	255, 1047
GlaI	GCGC	5 cut(s)	231, 255, 501, 543, 1047
GsaI	CCCAGC	3 cut(s)	168, 630, 1269
GsuI	CTGGAG	4 cut(s)	75, 442, 914, 1265
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	702, 761, 1909, 2966
HapII	CCGG	6 cut(s)	182, 699, 1357, 1407, 2943, 2967
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	5 cut(s)	232, 256, 502, 544, 1048
Hin1I	GRCGYC	1 cut(s)	359
Hin6I	GCGC	5 cut(s)	230, 254, 500, 542, 1046
HinP1I	GCGC	5 cut(s)	230, 254, 500, 542, 1046
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	7 cut(s)	518, 1075, 1825, 1854, 1967, 2218, 2567
HpaII	CCGG	6 cut(s)	182, 699, 1357, 1407, 2943, 2967
Hpy166II	GTNNAC	5 cut(s)	363, 654, 732, 1933, 2512
Hpy8I	GTNNAC	5 cut(s)	363, 654, 732, 1933, 2512
Hpy99I	CGWCG	1 cut(s)	2575
HpyCH4III	ACNGT	7 cut(s)	266, 1531, 1635, 1937, 1960, 2426, 2751
HpyCH4IV	ACGT	3 cut(s)	105, 1123, 1868
HpyF10VI	GCNNNNNNNGC	9 cut(s)	386, 499, 607, 932, 1054, 1167, 1271, 1379, 2943
HpyF3I	CTNAG	7 cut(s)	138, 770, 1626, 1662, 2097, 2463, 2616
HpySE526I	ACGT	3 cut(s)	105, 1123, 1868
Hsp92I	GRCGYC	1 cut(s)	359
HspAI	GCGC	5 cut(s)	230, 254, 500, 542, 1046
Ksp22I	TGATCA	2 cut(s)	571, 790
LmnI	GCTCC	6 cut(s)	193, 269, 1395, 1568, 2480, 2629
MaeI	CTAG	3 cut(s)	21, 1340, 1902
MaeII	ACGT	3 cut(s)	105, 1123, 1868
MaeIII	GTNAC	3 cut(s)	474, 1409, 1629
MfeI	CAATTG	4 cut(s)	810, 2304, 2353, 2953
MflI	RGATCY	1 cut(s)	1878
MhlI	GDGCHC	3 cut(s)	1400, 1499, 2471
MlsI	TGGCCA	1 cut(s)	1909
MluNI	TGGCCA	1 cut(s)	1909
MlyI	GAGTC	4 cut(s)	527, 1834, 1863, 2561
MmeI	TCCRAC	2 cut(s)	1590, 2246
Mox20I	TGGCCA	1 cut(s)	1909
Mph1103I	ATGCAT	4 cut(s)	244, 1163, 1228, 2598
MscI	TGGCCA	1 cut(s)	1909
MslI	CAYNNNNRTG	3 cut(s)	381, 469, 1227
Msp20I	TGGCCA	1 cut(s)	1909
MspA1I	CMGCKG	2 cut(s)	392, 1661
MspCI	CTTAAG	1 cut(s)	583
MspI	CCGG	6 cut(s)	182, 699, 1357, 1407, 2943, 2967
MspR9I	CCNGG	8 cut(s)	182, 183, 689, 699, 932, 1072, 1615, 2968
MunI	CAATTG	4 cut(s)	810, 2304, 2353, 2953
MvaI	CCWGG	4 cut(s)	689, 932, 1072, 1615
MwoI	GCNNNNNNNGC	9 cut(s)	386, 499, 607, 932, 1054, 1167, 1271, 1379, 2943
NciI	CCSGG	4 cut(s)	182, 183, 699, 2968
NlaIV	GGNNCC	6 cut(s)	555, 992, 1498, 1564, 2035, 2741
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	3 cut(s)	474, 1409, 1629
NsbI	TGCGCA	2 cut(s)	255, 1047
NsiI	ATGCAT	4 cut(s)	244, 1163, 1228, 2598
NspI	RCATGY	4 cut(s)	785, 1226, 1230, 1733
PaeI	GCATGC	1 cut(s)	1226
PagI	TCATGA	2 cut(s)	382, 1303
PfeI	GAWTC	3 cut(s)	1075, 1967, 2218
PflMI	CCANNNNNTGG	1 cut(s)	2012
PinAI	ACCGGT	1 cut(s)	1406
PleI	GAGTC	4 cut(s)	526, 1833, 1862, 2561
PpsI	GAGTC	4 cut(s)	526, 1833, 1862, 2561
Ppu21I	YACGTR	1 cut(s)	1124
PsiI	TTATAA	1 cut(s)	2538
Psp124BI	GAGCTC	1 cut(s)	2471
Psp6I	CCWGG	4 cut(s)	687, 930, 1070, 1613
PspFI	CCCAGC	3 cut(s)	164, 626, 1265
PspGI	CCWGG	4 cut(s)	687, 930, 1070, 1613
PspN4I	GGNNCC	6 cut(s)	555, 992, 1498, 1564, 2035, 2741
PspPI	GGNCC	3 cut(s)	799, 948, 2034
PstI	CTGCAG	2 cut(s)	667, 1886
PsuI	RGATCY	1 cut(s)	1878
PvuII	CAGCTG	2 cut(s)	392, 1661
RseI	CAYNNNNRTG	3 cut(s)	381, 469, 1227
SacI	GAGCTC	1 cut(s)	2471
Sau96I	GGNCC	3 cut(s)	799, 948, 2034
ScaI	AGTACT	1 cut(s)	2807
SchI	GAGTC	4 cut(s)	527, 1834, 1863, 2561
ScrFI	CCNGG	8 cut(s)	182, 183, 689, 699, 932, 1072, 1615, 2968
SduI	GDGCHC	3 cut(s)	1400, 1499, 2471
SfcI	CTRYAG	3 cut(s)	663, 1805, 1882
SgrAI	CRCCGGYG	1 cut(s)	1406
SinI	GGWCC	3 cut(s)	799, 948, 2034
SmaI	CCCGGG	1 cut(s)	183
SmiMI	CAYNNNNRTG	3 cut(s)	381, 469, 1227
SmlI	CTYRAG	8 cut(s)	583, 985, 1795, 1829, 2470, 2608, 2801, 2867
SmoI	CTYRAG	8 cut(s)	583, 985, 1795, 1829, 2470, 2608, 2801, 2867
SpeI	ACTAGT	1 cut(s)	1339
SphI	GCATGC	1 cut(s)	1226
SsiI	CCGC	3 cut(s)	65, 1757, 2857
SspI	AATATT	1 cut(s)	2104
SspMI	CTAG	3 cut(s)	21, 1340, 1902
SstI	GAGCTC	1 cut(s)	2471
StyD4I	CCNGG	8 cut(s)	180, 181, 687, 697, 930, 1070, 1613, 2966
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	7 cut(s)	266, 1531, 1635, 1937, 1960, 2426, 2751
TaiI	ACGT	3 cut(s)	108, 1126, 1871
TaqI	TCGA	4 cut(s)	17, 1129, 2404, 2573
TatI	WGTACW	4 cut(s)	875, 1772, 1960, 2805
TfiI	GAWTC	3 cut(s)	1075, 1967, 2218
TscAI	CASTG	1 cut(s)	2017
TseFI	GTSAC	3 cut(s)	474, 1409, 1629
Tsp45I	GTSAC	3 cut(s)	474, 1409, 1629
TspGWI	ACGGA	3 cut(s)	204, 208, 791
TspMI	CCCGGG	1 cut(s)	181
TspRI	CASTG	1 cut(s)	2017
Van91I	CCANNNNNTGG	1 cut(s)	2012
Vha464I	CTTAAG	1 cut(s)	583
VpaK11BI	GGWCC	3 cut(s)	799, 948, 2034
XapI	RAATTY	9 cut(s)	148, 534, 966, 1144, 1509, 1621, 2048, 2086, 2287
XbaI	TCTAGA	1 cut(s)	1901
XceI	RCATGY	4 cut(s)	785, 1226, 1230, 1733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XmaI	CCCGGG	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	2511
XspI	CTAG	3 cut(s)	21, 1340, 1902
ZrmI	AGTACT	1 cut(s)	2807
Zsp2I	ATGCAT	4 cut(s)	244, 1163, 1228, 2598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.