Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003599

Physical Location & Seq

Genomic Coordinates Reverse (-)

30995081 .. 30997183

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG279700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGGAATACCAGTTTTCGTCTGGAGAGGGGAAGGATCAGGGGTCGTCTTCTGGAGCTGAGGTGGAGGGTTTGGTGCCACTGGATGGTGAAGTGAGGAACTCGATTTCGGAGGATATGTTTAACAACATTGCTGAGTTTATGAATTTCGATTCTTATGCTGGATGGTGCAGCAGCCCGGGAACAATGGAGCAGATTGCGGCGGCGTATCCATCGGTGAGTTATGCTCCTCTGGATGCCTTGAACTTCACACAACAGAACGGTGGAACATTGCCTGTGACTGAAGATGGTGGGACTTTTGATGAGGCGGGGAGTTCTTTTGATTGTGGTGACAAGATTGTGTTTCGGCAAACCCAATACAGGGCGTCAACTGATTCCCACCACACTCATGATGCAGCTGCTAAACCGAAGAATGGTTCTTTTCAACAGAATAATGTCATGGATATGGCAGACTGTGTGATCCCCAGGCCATATGGATGGTCACTTAATGAGAAGATGCTAAAGGCCTTGTCCTTTTTCAAGGACTCTTTTGGTGGGGGAATTTTGGCACAAGTATGGGTTCCCATGAAGCATGGTGATCACTCCTTCTTAAGCACTTGCGAACAGCCCTATTTGCTTGACCATGTTCTTGCAGGGTATCGGGAAGTGTCGAGGTTGTTTACATTCGCTGCAGAAGAAACGCAGGGTACTAGCCTGGGGCTTCCTGGCCGTGTATTTGTCTCCAAAGTTCCAGAGTGGGCATCAAATGTTAGCTATTACAACAAGGACGAGTACCTGAGGGTGGAACATGCAGCTAATCATCAGGTCCGTGGATCAATTGCTTTGCCGGTTTTTGATCTGAACTCTGAGAAGTCATGTTGTGGTGTGTTTGAACTTGTCAGTACAAAAGATAAACTCAACTTTGATGCAGAGATGGAGATGGTTTGTGAGGCCCTCCAGGCTGTGAAGTTGAGGACCACTACGCCTCCCCGACTTCATCCCCAGTGCCTCTCAAAGAACCAAAGGGGTGCTTTAACTGAAATTACTGATGTCTTACGAGCTGTGTGTCATGCACATACATTGCCGTTGGCTCTCACCTGGATTCCTTGTTGCTACTCTGAGGGTGATGCAGAGGAAATTAGAAGAGTACGTGTTCGAGGGGGTATTACAAAATCAAATGAAAAATGCATACTATGCATTGAGGAAACAGCTTGTTATATAAATGATAGAGCGATGCAAGGCTTTGTGCATGCATGTGCAGAACATCATCTTGAGGAAGGAAATGGTATTGCTGGGAAAGCACTTCAATCAAATCATCCCTTCTTCATTCATGATGTGAAGGTGTATGACATATATGACTATCCACTAGTTCATCATGCACGCAGGTATGGTTTGAATGCTGCTGTTGCAATCAGACTAAGGAGCACCTACACTGGTGATGATGACTATATCTTAGAGTTTTTTCTGCCTGTTAATATGAAGGGCAGTTCTGAACAGCAACTTTTGTTAAACAACCTCTCGGGTACCATGCAGAGAATGTGTAAGAGTTTAAGGACAGTGTCAGATGCAGAATTGGCTGGGGTAGAAGGCTCCAACACTGGGTTTCAAAGGGAGGCAGTCTCGAATGCCCCACCGATCCCCAGGAGAGATTCTCAGATAACATCATCAGATAGTGAAATGAAGTTAACTGAGAAGATGCCCTCAAATGTTTATAACAGAAGAGATGGTGGAGTCAAAATAGATTTTCCTTCTGAACAGGCACCACTTGGATCAAGAAGGCAGGTGGAGAAGAAGCGTAGTACAGCAGAGAAAAATGTGAGCTTGAGTGTTCTACAGCAATACTTCTCTGGGAGTCTCAAGGATGCTGCAAAAAGCATTGGAGTCTGCCCCACTACACTAAAAAGGATCTGCAGACAACACGGGATCCCAAGATGGCCATCTCGTAAAATAAATAAGGTGAATCGTTCCTTGAAGAAAATACAAACTGTACTTGATTCTGTTCAGGGGGTGGAAGGAGGATTGAAGTATGACCCAACCACTGGAGGGTTTGTGGCAACAGGGTCTACCATCCAAGAGTTTGATGCACAGAAAAATCTTTTCTTCTCTGAGAAGAACTTGCCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

700

Amino Acids

77.48

Weight (kDa)

6.06

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	327 - 510	7.6e-76	NLP protein GAF domain
RWP-RK	PF02042	598 - 644	1.6e-22	RWP-RK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT3G59580 AT3G59580 AT3G59580
fragaria_vesca	FvH4_1g24430 FvH4_1g24430 FvH4_1g24430
malus_domestica	MD04G1116200.v1.1 MD12G1131800.v1.1
prunus_persica	Prupe.1G200100_v2.0.a1
pyrus_communis	pycom04g10620 pycom12g12770
rosa_chinensis	RchiOBHm_Chr2g0121311
rosa_laevigata	RLG00000018617
rosa_multiflora	Rmu_sc0000079.1_g000028 Rmu_sc0000315.1_g000101
rosa_roxburghii	Rroxscaffold_2G00122460
rosa_rugosa	Rorug02G0233300 Rorug02G0233400 Rorug02G0233500
rosa_samantha	Rh2AG290100 Rh2BG301000 Rh2CG279700 Rh2DG314900
rosa_wichuraiana	Rw2G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1689
AarI	CACCTGC	1 cut(s)	1747
Acc36I	ACCTGC	2 cut(s)	1350, 1747
Acc65I	GGTACC	1 cut(s)	1499
AccB1I	GGYRCC	3 cut(s)	73, 1499, 1735
AccB7I	CCANNNNNTGG	2 cut(s)	83, 2015
AccI	GTMKAC	1 cut(s)	2039
AciI	CCGC	3 cut(s)	197, 200, 305
AclWI	GGATC	8 cut(s)	42, 451, 817, 1606, 1753, 1889, 1894, 1907
AcoI	YGGCCR	2 cut(s)	703, 1910
AcsI	RAATTY	2 cut(s)	142, 537
AcuI	CTGAAG	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	7 cut(s)	685, 770, 880, 1125, 1501, 1777, 1965
AfiI	CCNNNNNNNGG	8 cut(s)	83, 357, 358, 410, 778, 1575, 2015, 2019
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	1126
AgsI	TTSAA	9 cut(s)	241, 422, 517, 869, 1283, 1372, 1583, 1948, 1999
AhlI	ACTAGT	1 cut(s)	1342
AjnI	CCWGG	6 cut(s)	461, 690, 700, 933, 1073, 1616
AluBI	AGCT	7 cut(s)	56, 395, 750, 791, 1037, 1187, 1797
AluI	AGCT	7 cut(s)	56, 395, 750, 791, 1037, 1187, 1797
Alw21I	GWGCWC	1 cut(s)	1403
Alw26I	GTCTC	3 cut(s)	721, 1600, 1835
AlwI	GGATC	8 cut(s)	42, 451, 817, 1606, 1753, 1889, 1894, 1907
Ama87I	CYCGRG	2 cut(s)	175, 1495
AoxI	GGCC	5 cut(s)	464, 501, 703, 927, 1910
ApeKI	GCWGC	8 cut(s)	168, 171, 392, 395, 665, 788, 1376, 1841
ApoI	RAATTY	2 cut(s)	142, 537
Asp718I	GGTACC	1 cut(s)	1499
AspS9I	GGNCC	3 cut(s)	802, 928, 951
AsuC2I	CCSGG	2 cut(s)	176, 177
AsuHPI	GGTGA	8 cut(s)	98, 226, 338, 584, 1063, 1112, 1424, 1945
AvaI	CYCGRG	2 cut(s)	175, 1495
AvaII	GGWCC	2 cut(s)	802, 951
AxyI	CCTNAGG	1 cut(s)	773
BalI	TGGCCA	1 cut(s)	1912
BamHI	GGATCC	1 cut(s)	1899
BanI	GGYRCC	3 cut(s)	73, 1499, 1735
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	1403
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	8 cut(s)	180, 183, 382, 404, 652, 800, 1363, 1828
BceAI	ACGGC	2 cut(s)	690, 1045
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	6 cut(s)	463, 692, 702, 935, 1075, 1618
BciVI	GTATCC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	3 cut(s)	721, 1600, 1835
BcuI	ACTAGT	1 cut(s)	1342
BfaI	CTAG	2 cut(s)	687, 1343
BfmI	CTRYAG	3 cut(s)	666, 1808, 1885
BfrI	CTTAAG	1 cut(s)	586
BfuAI	ACCTGC	2 cut(s)	1350, 1747
BfuI	GTATCC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	935
Bme1390I	CCNGG	8 cut(s)	176, 177, 463, 692, 702, 935, 1075, 1618
Bme18I	GGWCC	2 cut(s)	802, 951
BmeT110I	CYCGRG	2 cut(s)	175, 1495
BmgT120I	GGNCC	3 cut(s)	802, 928, 951
BmiI	GGNNCC	6 cut(s)	75, 558, 1501, 1567, 1737, 1901
BmrFI	CCNGG	8 cut(s)	176, 177, 463, 692, 702, 935, 1075, 1618
BmrI	ACTGGG	2 cut(s)	973, 1584
BmuI	ACTGGG	2 cut(s)	973, 1584
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	6 cut(s)	208, 240, 1580, 1612, 1612, 1644
BpmI	CTGGAG	4 cut(s)	42, 72, 917, 2037
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	3 cut(s)	1268, 1817, 1819
BpuMI	CCSGG	2 cut(s)	176, 177
BsaAI	YACGTR	1 cut(s)	1127
BsaBI	GATNNNNATC	1 cut(s)	1912
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	5 cut(s)	175, 461, 691, 805, 1616
BsaXI	ACNNNNNCTCC	8 cut(s)	45, 75, 101, 131, 946, 976, 2010, 2040
Bsc4I	CCNNNNNNNGG	8 cut(s)	83, 357, 358, 410, 778, 1575, 2015, 2019
Bse118I	RCCGGY	1 cut(s)	823
Bse1I	ACTGG	6 cut(s)	10, 84, 979, 1414, 1579, 2020
Bse21I	CCTNAGG	1 cut(s)	773
Bse3DI	GCAATG	3 cut(s)	126, 266, 1055
Bse8I	GATNNNNATC	1 cut(s)	1912
BseBI	CCWGG	6 cut(s)	463, 692, 702, 935, 1075, 1618
BseDI	CCNNGG	5 cut(s)	175, 461, 691, 805, 1616
BseGI	GGATG	8 cut(s)	88, 167, 238, 479, 973, 1291, 1843, 2043
BseJI	GATNNNNATC	1 cut(s)	1912
BseLI	CCNNNNNNNGG	8 cut(s)	83, 357, 358, 410, 778, 1575, 2015, 2019
BseMI	GCAATG	3 cut(s)	126, 266, 1055
BseMII	CTCAG	8 cut(s)	48, 123, 764, 834, 1086, 1643, 1656, 2073
BseNI	ACTGG	6 cut(s)	10, 84, 979, 1414, 1579, 2020
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	8 cut(s)	180, 183, 382, 404, 652, 800, 1363, 1828
BseYI	CCCAGC	2 cut(s)	1268, 1553
BsgI	GTGCAG	2 cut(s)	187, 1254
BshFI	GGCC	5 cut(s)	466, 503, 705, 929, 1912
BshNI	GGYRCC	3 cut(s)	73, 1499, 1735
BsiHKAI	GWGCWC	1 cut(s)	1403
BsiHKCI	CYCGRG	2 cut(s)	175, 1495
BsiSI	CCGG	2 cut(s)	176, 824
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	8 cut(s)	83, 357, 358, 410, 778, 1575, 2015, 2019
BsmAI	GTCTC	3 cut(s)	721, 1600, 1835
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	2 cut(s)	1378, 1606
BsnI	GGCC	5 cut(s)	466, 503, 705, 929, 1912
BsoBI	CYCGRG	2 cut(s)	175, 1495
Bsp1286I	GDGCHC	1 cut(s)	1403
Bsp143I	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
BspACI	CCGC	3 cut(s)	197, 200, 305
BspANI	GGCC	5 cut(s)	466, 503, 705, 929, 1912
BspCNI	CTCAG	8 cut(s)	49, 124, 765, 835, 1087, 1642, 1657, 2074
BspHI	TCATGA	2 cut(s)	385, 1306
BspLI	GGNNCC	6 cut(s)	75, 558, 1501, 1567, 1737, 1901
BspMAI	CTGCAG	2 cut(s)	670, 1889
BspMI	ACCTGC	2 cut(s)	1350, 1747
BspPI	GGATC	8 cut(s)	42, 451, 817, 1606, 1753, 1889, 1894, 1907
BspT107I	GGYRCC	3 cut(s)	73, 1499, 1735
BspTI	CTTAAG	1 cut(s)	586
BsrDI	GCAATG	3 cut(s)	126, 266, 1055
BsrFI	RCCGGY	1 cut(s)	823
BsrI	ACTGG	6 cut(s)	10, 84, 979, 1414, 1579, 2020
BssAI	RCCGGY	1 cut(s)	823
BssECI	CCNNGG	5 cut(s)	175, 461, 691, 805, 1616
BssMI	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
BssNI	GRCGYC	1 cut(s)	362
Bst2UI	CCWGG	6 cut(s)	463, 692, 702, 935, 1075, 1618
Bst4CI	ACNGT	4 cut(s)	260, 452, 1534, 1963
Bst6I	CTCTTC	2 cut(s)	1114, 1690
BstACI	GRCGYC	1 cut(s)	362
BstAFI	CTTAAG	1 cut(s)	586
BstAPI	GCANNNNNTGC	1 cut(s)	1170
BstBAI	YACGTR	1 cut(s)	1127
BstC8I	GCNNGC	3 cut(s)	1227, 1357, 2097
BstDSI	CCRYGG	1 cut(s)	805
BstF5I	GGATG	8 cut(s)	88, 167, 238, 479, 973, 1291, 1843, 2043
BstKTI	GATC	9 cut(s)	37, 459, 577, 812, 835, 1614, 1748, 1884, 1902
BstMAI	GTCTC	3 cut(s)	721, 1600, 1835
BstMBI	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
BstMWI	GCNNNNNNNGC	6 cut(s)	610, 935, 1170, 1274, 1382, 1550
BstNI	CCWGG	6 cut(s)	463, 692, 702, 935, 1075, 1618
BstNSI	RCATGY	3 cut(s)	788, 1229, 1233
BstSCI	CCNGG	8 cut(s)	174, 175, 461, 690, 700, 933, 1073, 1616
BstSFI	CTRYAG	3 cut(s)	666, 1808, 1885
BstV1I	GCAGC	8 cut(s)	180, 183, 382, 404, 652, 800, 1363, 1828
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	1881, 1899
BstXI	CCANNNNNNTGG	1 cut(s)	474
BstYI	RGATCY	2 cut(s)	1881, 1899
Bsu36I	CCTNAGG	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	5 cut(s)	466, 503, 705, 929, 1912
BtgI	CCRYGG	1 cut(s)	805
BtgZI	GCGATG	1 cut(s)	1223
BtsCI	GGATG	8 cut(s)	88, 167, 238, 479, 973, 1291, 1843, 2043
BtsIMutI	CAGTG	6 cut(s)	77, 986, 1407, 1539, 1572, 2013
BveI	ACCTGC	2 cut(s)	1350, 1747
Cac8I	GCNNGC	3 cut(s)	1227, 1357, 2097
CciI	TCATGA	2 cut(s)	385, 1306
Cfr10I	RCCGGY	1 cut(s)	823
Cfr13I	GGNCC	3 cut(s)	802, 928, 951
Cfr9I	CCCGGG	1 cut(s)	175
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	7 cut(s)	684, 769, 879, 1124, 1500, 1776, 1964
CviQI	GTAC	7 cut(s)	684, 769, 879, 1124, 1500, 1776, 1964
DpnI	GATC	9 cut(s)	36, 458, 576, 811, 834, 1613, 1747, 1883, 1901
DpnII	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
EaeI	YGGCCR	2 cut(s)	703, 1910
Eam1104I	CTCTTC	2 cut(s)	1114, 1690
EarI	CTCTTC	2 cut(s)	1114, 1690
Eco147I	AGGCCT	1 cut(s)	503
Eco47I	GGWCC	2 cut(s)	802, 951
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	773
Eco88I	CYCGRG	2 cut(s)	175, 1495
EcoO109I	RGGNCCY	1 cut(s)	928
EcoRII	CCWGG	6 cut(s)	461, 690, 700, 933, 1073, 1616
EcoT22I	ATGCAT	3 cut(s)	1166, 1175, 1231
FalI	AAGNNNNNCTT	2 cut(s)	991, 1023
FaqI	GGGAC	1 cut(s)	304
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	2039
FokI	GGATG	8 cut(s)	95, 174, 245, 486, 960, 1278, 1850, 2030
FspBI	CTAG	2 cut(s)	687, 1343
GsaI	CCCAGC	2 cut(s)	1272, 1557
GsuI	CTGGAG	4 cut(s)	42, 72, 917, 2037
HaeIII	GGCC	5 cut(s)	466, 503, 705, 929, 1912
HapII	CCGG	2 cut(s)	176, 824
HgaI	GACGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	362
HincII	GTYRAC	2 cut(s)	366, 1662
HindII	GTYRAC	2 cut(s)	366, 1662
HpaI	GTTAAC	1 cut(s)	1662
HpaII	CCGG	2 cut(s)	176, 824
HphI	GGTGA	8 cut(s)	98, 226, 338, 584, 1063, 1112, 1424, 1945
Hpy166II	GTNNAC	4 cut(s)	366, 657, 1662, 2040
Hpy8I	GTNNAC	4 cut(s)	366, 657, 1662, 2040
HpyCH4III	ACNGT	4 cut(s)	260, 452, 1534, 1963
HpyCH4IV	ACGT	1 cut(s)	1126
HpyF10VI	GCNNNNNNNGC	6 cut(s)	610, 935, 1170, 1274, 1382, 1550
HpySE526I	ACGT	1 cut(s)	1126
Hsp92I	GRCGYC	1 cut(s)	362
KpnI	GGTACC	1 cut(s)	1503
Ksp22I	TGATCA	1 cut(s)	574
KspAI	GTTAAC	1 cut(s)	1662
Kzo9I	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
LmnI	GCTCC	5 cut(s)	53, 187, 229, 1398, 1571
Lsp1109I	GCAGC	8 cut(s)	180, 183, 382, 404, 652, 800, 1363, 1828
MaeI	CTAG	2 cut(s)	687, 1343
MaeII	ACGT	1 cut(s)	1126
MaeIII	GTNAC	3 cut(s)	274, 326, 477
MalI	GATC	9 cut(s)	36, 458, 576, 811, 834, 1613, 1747, 1883, 1901
MboI	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	2 cut(s)	1881, 1899
MhlI	GDGCHC	1 cut(s)	1403
MlsI	TGGCCA	1 cut(s)	1912
MluCI	AATT	6 cut(s)	142, 537, 813, 1017, 1113, 1547
MluNI	TGGCCA	1 cut(s)	1912
MlyI	GAGTC	4 cut(s)	515, 1716, 1837, 1866
MmeI	TCCRAC	1 cut(s)	1593
Mox20I	TGGCCA	1 cut(s)	1912
Mph1103I	ATGCAT	3 cut(s)	1166, 1175, 1231
MscI	TGGCCA	1 cut(s)	1912
MseI	TTAA	8 cut(s)	120, 483, 587, 1010, 1449, 1484, 1526, 1661
MslI	CAYNNNNRTG	5 cut(s)	384, 440, 472, 550, 1230
Msp20I	TGGCCA	1 cut(s)	1912
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	2 cut(s)	176, 824
MspR9I	CCNGG	8 cut(s)	176, 177, 463, 692, 702, 935, 1075, 1618
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	2 cut(s)	1378, 1606
MvaI	CCWGG	6 cut(s)	463, 692, 702, 935, 1075, 1618
MwoI	GCNNNNNNNGC	6 cut(s)	610, 935, 1170, 1274, 1382, 1550
NciI	CCSGG	2 cut(s)	176, 177
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
NlaIV	GGNNCC	6 cut(s)	75, 558, 1501, 1567, 1737, 1901
NmuCI	GTSAC	3 cut(s)	274, 326, 477
NsiI	ATGCAT	3 cut(s)	1166, 1175, 1231
NspI	RCATGY	3 cut(s)	788, 1229, 1233
PaeI	GCATGC	1 cut(s)	1229
PagI	TCATGA	2 cut(s)	385, 1306
PaqCI	CACCTGC	1 cut(s)	1747
PceI	AGGCCT	1 cut(s)	503
PctI	GAATGC	2 cut(s)	1378, 1606
PfeI	GAWTC	6 cut(s)	149, 371, 1078, 1625, 1936, 1970
PflFI	GACNNNGTC	1 cut(s)	1534
PflMI	CCANNNNNTGG	2 cut(s)	83, 2015
PleI	GAGTC	4 cut(s)	515, 1715, 1836, 1865
PpsI	GAGTC	4 cut(s)	515, 1715, 1836, 1865
Ppu21I	YACGTR	1 cut(s)	1127
PsiI	TTATAA	1 cut(s)	1689
Psp6I	CCWGG	6 cut(s)	461, 690, 700, 933, 1073, 1616
PspFI	CCCAGC	2 cut(s)	1268, 1553
PspGI	CCWGG	6 cut(s)	461, 690, 700, 933, 1073, 1616
PspN4I	GGNNCC	6 cut(s)	75, 558, 1501, 1567, 1737, 1901
PspPI	GGNCC	3 cut(s)	802, 928, 951
PstI	CTGCAG	2 cut(s)	670, 1889
PsuI	RGATCY	2 cut(s)	1881, 1899
PsyI	GACNNNGTC	1 cut(s)	1534
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	7 cut(s)	685, 770, 880, 1125, 1501, 1777, 1965
RsaNI	GTAC	7 cut(s)	684, 769, 879, 1124, 1500, 1776, 1964
RseI	CAYNNNNRTG	5 cut(s)	384, 440, 472, 550, 1230
SaqAI	TTAA	8 cut(s)	120, 483, 587, 1010, 1449, 1484, 1526, 1661
Sau3AI	GATC	9 cut(s)	34, 456, 574, 809, 832, 1611, 1745, 1881, 1899
Sau96I	GGNCC	3 cut(s)	802, 928, 951
SchI	GAGTC	4 cut(s)	515, 1716, 1837, 1866
ScrFI	CCNGG	8 cut(s)	176, 177, 463, 692, 702, 935, 1075, 1618
SduI	GDGCHC	1 cut(s)	1403
SfcI	CTRYAG	3 cut(s)	666, 1808, 1885
SinI	GGWCC	2 cut(s)	802, 951
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	5 cut(s)	384, 440, 472, 550, 1230
SmlI	CTYRAG	4 cut(s)	586, 1247, 1798, 1832
SmoI	CTYRAG	4 cut(s)	586, 1247, 1798, 1832
SpeI	ACTAGT	1 cut(s)	1342
SphI	GCATGC	1 cut(s)	1229
Sse9I	AATT	6 cut(s)	142, 537, 813, 1017, 1113, 1547
SseBI	AGGCCT	1 cut(s)	503
SsiI	CCGC	3 cut(s)	197, 200, 305
SspMI	CTAG	2 cut(s)	687, 1343
StuI	AGGCCT	1 cut(s)	503
StyD4I	CCNGG	8 cut(s)	174, 175, 461, 690, 700, 933, 1073, 1616
TaaI	ACNGT	4 cut(s)	260, 452, 1534, 1963
TaiI	ACGT	1 cut(s)	1129
TaqI	TCGA	5 cut(s)	101, 147, 647, 1132, 1598
TasI	AATT	6 cut(s)	142, 537, 813, 1017, 1113, 1547
TatI	WGTACW	3 cut(s)	878, 1775, 1963
TauI	GCSGC	2 cut(s)	200, 203
TfiI	GAWTC	6 cut(s)	149, 371, 1078, 1625, 1936, 1970
Tru1I	TTAA	8 cut(s)	120, 483, 587, 1010, 1449, 1484, 1526, 1661
Tru9I	TTAA	8 cut(s)	120, 483, 587, 1010, 1449, 1484, 1526, 1661
TscAI	CASTG	6 cut(s)	84, 986, 1414, 1539, 1579, 2020
TseFI	GTSAC	3 cut(s)	274, 326, 477
TseI	GCWGC	8 cut(s)	168, 171, 392, 395, 665, 788, 1376, 1841
Tsp45I	GTSAC	3 cut(s)	274, 326, 477
TspDTI	ATGAA	9 cut(s)	155, 578, 962, 1170, 1291, 1295, 1337, 1469, 1670
TspGWI	ACGGA	1 cut(s)	794
TspMI	CCCGGG	1 cut(s)	175
TspRI	CASTG	6 cut(s)	84, 986, 1414, 1539, 1579, 2020
Tth111I	GACNNNGTC	1 cut(s)	1534
Van91I	CCANNNNNTGG	2 cut(s)	83, 2015
Vha464I	CTTAAG	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	802, 951
XapI	RAATTY	2 cut(s)	142, 537
XceI	RCATGY	3 cut(s)	788, 1229, 1233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmaI	CCCGGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	2039
XspI	CTAG	2 cut(s)	687, 1343
Zsp2I	ATGCAT	3 cut(s)	1166, 1175, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.