Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003599

Physical Location & Seq

Genomic Coordinates Reverse (-)

38825066 .. 38832701

Gene Structure 7636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG314900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGGAATACCAGTTTTCGTCTGGAGAGAGGAAGGATCAGGGGTCGTCTTCTGGAGCTGAGGTGGAGGGTTTGTTGCCACTGGATGGTGAAGACGAAAGCTGGAGGGATCAGGGGTCGTCGTCTTCTGCAGCTGGGGTGGAGGGTTTGGTGCCACTGGATGGTGAAGTGAGGAACTCGATTTCGGAGGATATGTTTAACAACATTGCTGAGTTTATGAATTTCGATTCTTATGCTGGATGGTGCAGCAGCCCGGGAACAATGGAGCAGATTGTGGCGGCGTATCCATCGGTGAGTTATGCTCATTTGGATGCCTTGAACTTCACACAACAGAACGGTGGAACGTTGCCTGTGACTGAAGATGGTGGGACTTTTGATGAGGCGGGGAGTTCTTTTGATTGTGGTGACAAGATTGTGTTTCGGCAAACCCAATACAGGGCGCCAACTGATTCCCACCACGCTCATGATGCAGCTGCTAAACCGAAGAATGGTTCTTTTCAACAGAATAATGTCATGGATATGGCAGACTGTGTGATCCCCAGGCCATATGGATGGTCACTTAATGAGAAGATGCTAAAGGCGTTGTCCTTTTTCAAGGAGTCTTTTGGTGGGGGAATTTTGGCACAAGTATGGGTTCCCATGAAGCATGGTGATCACTCCTTCTTAAGCACTTGCGAACAGCCCTATTTGCTTGACCATGTTCTTGCAGGGTATCGGGAAGTGTCGAGGATGTTTACATTCGCTGCAGAAGAAACGCAGGGTACTAGCCTGGGGCTTCCTGGCCGTGTATTTGTCTCCAAAGTTCCAGAGTGGGCATCAAATGTTAGCGATTACAACAAGGACGAGTACCTGAGGGTGGAACATGCAGCTAATCATCAGGTCCGTGGATCAATTGCTTTGCCGGTTTTTGATCTGAACTCTGAGAAGTCATGTTGTGGTGTGTTTGAACTTGTCAGTACAAAAGATAAACTCAACTTTGATGCAGAGATGGAGATGGTTTGTGAGGCCCTCCAGGCTGTGAAGTTGAGGACCACTACGCCTCCCCGACTTCATCCCCAGTGCCTCTCAAAGAACCAAAGGGCTGCTTTAACTGAAATTACTGATGTCTTACGAGCTGTGTGTCATGCACATACATTGCCGTTGGCTCTCACCTGGATTCCTTGTTGCTACTCTGAGGGTGATGCAGAGGAAATTAGAAGAGTACGTGTTCGAGGGGGTATTACAAAATCAAATGAAAAATGCATACTATGCATTGAGGAAACAGCTTGTTATATAAATGATAGAGCGATGCAAGGCTTTGTGCATGCATGTGCAGAACACCATCTTGAGGAAGGAAATGGTATTGCTGGGAAAGCACTTCAATCAAATCATCCCTTCTTCATTCATGATGTGAAGGTGTATGACATATATGACTATCCACTAGTTCATCATGCACGCAGGTATGGCTTGAACGCTGCTGTTGCAATCAGACTAAGGAGCACCTACACTGGTGATGATGACTATATCTTAGAGTTTTTTCTGCCTGTTAATATGAAGGGCAGTTCTGAACAGCAACTTTTGTTAAACAACCTCTCGGGTACCATGCAGAGAATGTGTAAGAGTTTAAGGACAGTGTCAGATGCAGAATTGGCTGGGTTAGAAGGCTCCAACACTGGGTTTCAAAGGGAGGCAGTCTCGAATGCCCCACCAATCCCCAGGAGAGATTCTCAGACAACATCATCAGATAGTGAAATGAAGTTAACTGAGAAGATGCCCTCAAATGTTTATAATAGAAGAGATGGTGGAGTCAAAATAGATTTTCCTTCTGAACAGGCACCACTTGGATCAAGAAGGCAGGTGGAGAAAAAGCGTAGTACAGCAGAGAAAAATGTGAGCTTGAGTGTTCTACAGCAATACTTCTCTGGGAGTCTCAAGGATGCTGCAAAAAGCATTGGAGTCTGCCCCACTACACTAAAAAGGATCTGCAGACAACACGGGATCCCAAGATGGCCATCTCGTAAAATAAATAAGGTGAATCGTTCCTTGAAGAAAATACAAACTGTACTTGATTCTGTTCAGGGGGTGGAAGGAGGATTGAAGTATGACCCAACCACTGGAGGGTTTGTGGCAACAGGGTCTACCATCCAAGAGTTTGATGCACAGAAAAATCTTTTCTTCTCTGAGAAGAACTTGCCTGCTCAGAATATTGTTCCAGTTCCCGAATATCCAGTTTCAGTACCTTCAATGTTTTGTAATGATGGTAAGAGTTTGGATATTATGTTGGAAGAGGATGGCTGTATGAATGAACGTATGTTGGTTCCATCTGCTCATCAGGCCAAGGAAGAGGTAAGTAAACAACACATCCCTGTGGTTGATTGTAGTATGGATTCCAAGCCGATTGCAATTGATTTTGGATCATGCCAGCCGACTGACCATGGCATCCTGCCTCATACTTGTCCGGAAAGTGCTTTTGGGGTCTCATATTTGGTAAAAGAAGTCAACAAATGGGATCAAAGCAAGGGGAGTCCAAAATTAGAGTGTTCTGACTGCCATGTTGTGTCTCAGAGCTCTTCTTCAAGCTTGACGCACTCATCAAATAGTTCTGGTTCAATGATGCATGGTTGTTCATCGAGTTCTCAGAGCTTTGATGAGCGAAACTACCCTAAAGTCAAAGCAAGAAATGATGAGAATGGATCGAAAATCATTGTGAAAGCTACTTATAAAGAAGATACAATTAGGTTCAAGTTTGAGCCTTCAGGTGGATGTCTTAAACTGTACGAAGAAGTTGCAAAGAGGTTGAGGTTGCAAGATGGAACTTTCCAACTCAAGTATCTAGATGATGAACAAGAATGGGTGATGTTAGTCAGTGATGCAGATTTGCAGGAGTGCCTTGAGATACTGGATGACATTGGGACACGTAGTGTTAAGTTTATGGTTCGTGATATACCTTTTGATCTAAGCAGTTCCGGCAGTAGTAATTGTTTTCTGGCCCCGGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

992

Amino Acids

109.68

Weight (kDa)

5.47

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	352 - 535	2.9e-76	NLP protein GAF domain
RWP-RK	PF02042	623 - 669	2.4e-22	RWP-RK domain
PB1	PF00564	894 - 972	2e-18	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT3G59580 AT3G59580 AT3G59580
fragaria_vesca	FvH4_1g24430 FvH4_1g24430 FvH4_1g24430
malus_domestica	MD04G1116200.v1.1 MD12G1131800.v1.1
prunus_persica	Prupe.1G200100_v2.0.a1
pyrus_communis	pycom04g10620 pycom12g12770
rosa_chinensis	RchiOBHm_Chr2g0121311
rosa_laevigata	RLG00000018617
rosa_multiflora	Rmu_sc0000079.1_g000028 Rmu_sc0000315.1_g000101
rosa_roxburghii	Rroxscaffold_2G00122460
rosa_rugosa	Rorug02G0233300 Rorug02G0233400 Rorug02G0233500
rosa_samantha	Rh2AG290100 Rh2BG301000 Rh2CG279700 Rh2DG314900
rosa_wichuraiana	Rw2G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1764, 2697
AarI	CACCTGC	1 cut(s)	1822
Acc36I	ACCTGC	2 cut(s)	1425, 1822
Acc65I	GGTACC	1 cut(s)	1574
AccB1I	GGYRCC	4 cut(s)	148, 436, 1574, 1810
AccB7I	CCANNNNNTGG	3 cut(s)	83, 158, 2090
AccI	GTMKAC	1 cut(s)	2114
AccIII	TCCGGA	1 cut(s)	2434
AciI	CCGC	2 cut(s)	275, 380
AclI	AACGTT	1 cut(s)	341
AcoI	YGGCCR	2 cut(s)	778, 1985
AcsI	RAATTY	2 cut(s)	217, 612
AcuI	CTGAAG	2 cut(s)	375, 2715
AcyI	GRCGYC	1 cut(s)	437
AdeI	CACNNNGTG	1 cut(s)	2897
AfaI	GTAC	9 cut(s)	760, 845, 955, 1200, 1576, 1852, 2040, 2214, 2753
AflII	CTTAAG	1 cut(s)	661
AflIII	ACRYGT	2 cut(s)	1201, 2891
AhlI	ACTAGT	1 cut(s)	1417
AjnI	CCWGG	6 cut(s)	536, 765, 775, 1008, 1148, 1691
AjuI	GAANNNNNNNTTGG	2 cut(s)	2430, 2462
Alw21I	GWGCWC	2 cut(s)	1478, 2546
Alw26I	GTCTC	5 cut(s)	796, 1675, 1910, 2458, 2541
Ama87I	CYCGRG	3 cut(s)	250, 1570, 2968
Aor13HI	TCCGGA	1 cut(s)	2434
AoxI	GGCC	6 cut(s)	539, 778, 1002, 1985, 2310, 2964
ApoI	RAATTY	2 cut(s)	217, 612
Asp718I	GGTACC	1 cut(s)	1574
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	4 cut(s)	877, 1003, 1026, 2965
AsuC2I	CCSGG	4 cut(s)	251, 252, 2969, 2970
AvaI	CYCGRG	3 cut(s)	250, 1570, 2968
AvaII	GGWCC	2 cut(s)	877, 1026
AxyI	CCTNAGG	1 cut(s)	848
BaeI	ACNNNNGTAYC	2 cut(s)	2789, 2822
BalI	TGGCCA	1 cut(s)	1987
BamHI	GGATCC	1 cut(s)	1974
BanI	GGYRCC	4 cut(s)	148, 436, 1574, 1810
BanII	GRGCYC	1 cut(s)	2546
BbsI	GAAGAC	3 cut(s)	39, 96, 114
Bbv12I	GWGCWC	2 cut(s)	1478, 2546
BbvCI	CCTCAGC	1 cut(s)	57
BceAI	ACGGC	2 cut(s)	765, 1120
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 2744, 2778
BciT130I	CCWGG	6 cut(s)	538, 767, 777, 1010, 1150, 1693
BciVI	GTATCC	1 cut(s)	291
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	4 cut(s)	251, 252, 2969, 2970
BcoDI	GTCTC	5 cut(s)	796, 1675, 1910, 2458, 2541
BcuI	ACTAGT	1 cut(s)	1417
BfaI	CTAG	3 cut(s)	762, 1418, 2810
BfmI	CTRYAG	4 cut(s)	126, 741, 1883, 1960
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	661
BfuAI	ACCTGC	2 cut(s)	1425, 1822
BfuI	GTATCC	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	1010
Bme18I	GGWCC	2 cut(s)	877, 1026
BmeT110I	CYCGRG	3 cut(s)	250, 1570, 2968
BmgT120I	GGNCC	4 cut(s)	877, 1003, 1026, 2965
BmiI	GGNNCC	9 cut(s)	150, 438, 633, 1576, 1642, 1812, 1976, 2295, 2967
BmrI	ACTGGG	2 cut(s)	1048, 1659
BmuI	ACTGGG	2 cut(s)	1048, 1659
BpiI	GAAGAC	3 cut(s)	39, 96, 114
BplI	GAGNNNNNCTC	6 cut(s)	283, 315, 1655, 1687, 1687, 1719
BpmI	CTGGAG	5 cut(s)	42, 72, 121, 992, 2112
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	5 cut(s)	1343, 1892, 1894, 2786, 2888
BpuMI	CCSGG	4 cut(s)	251, 252, 2969, 2970
BsaAI	YACGTR	2 cut(s)	1202, 2894
BsaBI	GATNNNNATC	1 cut(s)	1987
BsaHI	GRCGYC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	2458
BsaJI	CCNNGG	9 cut(s)	250, 536, 766, 880, 1691, 2313, 2410, 2967, 2968
BsaWI	WCCGGW	1 cut(s)	2434
Bse118I	RCCGGY	1 cut(s)	898
Bse21I	CCTNAGG	1 cut(s)	848
Bse3DI	GCAATG	2 cut(s)	201, 1130
Bse8I	GATNNNNATC	1 cut(s)	1987
BseAI	TCCGGA	1 cut(s)	2434
BseBI	CCWGG	6 cut(s)	538, 767, 777, 1010, 1150, 1693
BseDI	CCNNGG	9 cut(s)	250, 536, 766, 880, 1691, 2313, 2410, 2967, 2968
BseJI	GATNNNNATC	1 cut(s)	1987
BseMI	GCAATG	2 cut(s)	201, 1130
BseYI	CCCAGC	3 cut(s)	131, 1343, 1628
BsgI	GTGCAG	2 cut(s)	262, 1329
BshFI	GGCC	6 cut(s)	541, 780, 1004, 1987, 2312, 2966
BshNI	GGYRCC	4 cut(s)	148, 436, 1574, 1810
BsiHKAI	GWGCWC	2 cut(s)	1478, 2546
BsiHKCI	CYCGRG	3 cut(s)	250, 1570, 2968
BsiSI	CCGG	5 cut(s)	251, 899, 2435, 2943, 2969
BslFI	GGGAC	2 cut(s)	379, 2902
BsmAI	GTCTC	5 cut(s)	796, 1675, 1910, 2458, 2541
BsmFI	GGGAC	2 cut(s)	379, 2902
BsmI	GAATGC	1 cut(s)	1681
BsnI	GGCC	6 cut(s)	541, 780, 1004, 1987, 2312, 2966
Bso31I	GGTCTC	1 cut(s)	2458
BsoBI	CYCGRG	3 cut(s)	250, 1570, 2968
Bsp1286I	GDGCHC	2 cut(s)	1478, 2546
Bsp13I	TCCGGA	1 cut(s)	2434
Bsp19I	CCATGG	1 cut(s)	2410
BspACI	CCGC	2 cut(s)	275, 380
BspANI	GGCC	6 cut(s)	541, 780, 1004, 1987, 2312, 2966
BspEI	TCCGGA	1 cut(s)	2434
BspHI	TCATGA	2 cut(s)	460, 1381
BspLI	GGNNCC	9 cut(s)	150, 438, 633, 1576, 1642, 1812, 1976, 2295, 2967
BspMAI	CTGCAG	3 cut(s)	130, 745, 1964
BspMI	ACCTGC	2 cut(s)	1425, 1822
BspQI	GCTCTTC	1 cut(s)	2551
BspT107I	GGYRCC	4 cut(s)	148, 436, 1574, 1810
BspTI	CTTAAG	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	2458
BsrDI	GCAATG	2 cut(s)	201, 1130
BsrFI	RCCGGY	1 cut(s)	898
BssAI	RCCGGY	1 cut(s)	898
BssECI	CCNNGG	9 cut(s)	250, 536, 766, 880, 1691, 2313, 2410, 2967, 2968
BssNI	GRCGYC	1 cut(s)	437
BssT1I	CCWWGG	2 cut(s)	2313, 2410
Bst2UI	CCWGG	6 cut(s)	538, 767, 777, 1010, 1150, 1693
Bst4CI	ACNGT	5 cut(s)	335, 527, 1609, 2038, 2751
Bst6I	CTCTTC	5 cut(s)	1189, 1765, 2256, 2313, 2551
BstACI	GRCGYC	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	661
BstAPI	GCANNNNNTGC	1 cut(s)	1245
BstBAI	YACGTR	2 cut(s)	1202, 2894
BstC8I	GCNNGC	4 cut(s)	1302, 1432, 2172, 2399
BstDSI	CCRYGG	2 cut(s)	880, 2410
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstMAI	GTCTC	5 cut(s)	796, 1675, 1910, 2458, 2541
BstNI	CCWGG	6 cut(s)	538, 767, 777, 1010, 1150, 1693
BstNSI	RCATGY	3 cut(s)	863, 1304, 1308
BstSFI	CTRYAG	4 cut(s)	126, 741, 1883, 1960
BstV2I	GAAGAC	3 cut(s)	39, 96, 114
BstX2I	RGATCY	3 cut(s)	1956, 1974, 2972
BstXI	CCANNNNNNTGG	1 cut(s)	549
BstYI	RGATCY	3 cut(s)	1956, 1974, 2972
Bsu36I	CCTNAGG	1 cut(s)	848
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	6 cut(s)	541, 780, 1004, 1987, 2312, 2966
BtgI	CCRYGG	2 cut(s)	880, 2410
BtgZI	GCGATG	1 cut(s)	1298
BtsIMutI	CAGTG	8 cut(s)	77, 152, 1061, 1482, 1614, 1647, 2088, 2848
BveI	ACCTGC	2 cut(s)	1425, 1822
Cac8I	GCNNGC	4 cut(s)	1302, 1432, 2172, 2399
CciI	TCATGA	2 cut(s)	460, 1381
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	898
Cfr13I	GGNCC	4 cut(s)	877, 1003, 1026, 2965
Cfr9I	CCCGGG	2 cut(s)	250, 2968
CseI	GACGC	1 cut(s)	2569
Csp6I	GTAC	9 cut(s)	759, 844, 954, 1199, 1575, 1851, 2039, 2213, 2752
CviQI	GTAC	9 cut(s)	759, 844, 954, 1199, 1575, 1851, 2039, 2213, 2752
DinI	GGCGCC	1 cut(s)	438
DraIII	CACNNNGTG	1 cut(s)	2897
EaeI	YGGCCR	2 cut(s)	778, 1985
Eam1104I	CTCTTC	5 cut(s)	1189, 1765, 2256, 2313, 2551
EarI	CTCTTC	5 cut(s)	1189, 1765, 2256, 2313, 2551
Ecl136II	GAGCTC	1 cut(s)	2544
Eco130I	CCWWGG	2 cut(s)	2313, 2410
Eco24I	GRGCYC	1 cut(s)	2546
Eco31I	GGTCTC	1 cut(s)	2458
Eco47I	GGWCC	2 cut(s)	877, 1026
Eco53kI	GAGCTC	1 cut(s)	2544
Eco57I	CTGAAG	2 cut(s)	375, 2715
Eco81I	CCTNAGG	1 cut(s)	848
Eco88I	CYCGRG	3 cut(s)	250, 1570, 2968
EcoICRI	GAGCTC	1 cut(s)	2544
EcoO109I	RGGNCCY	1 cut(s)	1003
EcoRII	CCWGG	6 cut(s)	536, 765, 775, 1008, 1148, 1691
EcoT14I	CCWWGG	2 cut(s)	2313, 2410
EcoT22I	ATGCAT	4 cut(s)	1241, 1250, 1306, 2595
EcoT38I	GRGCYC	1 cut(s)	2546
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
ErhI	CCWWGG	2 cut(s)	2313, 2410
FalI	AAGNNNNNCTT	2 cut(s)	1066, 1098
FaqI	GGGAC	2 cut(s)	379, 2902
FauI	CCCGC	1 cut(s)	373
FauNDI	CATATG	1 cut(s)	544
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	2114
FriOI	GRGCYC	1 cut(s)	2546
FspBI	CTAG	3 cut(s)	762, 1418, 2810
GlaI	GCGC	1 cut(s)	438
GsaI	CCCAGC	3 cut(s)	135, 1347, 1632
GsuI	CTGGAG	5 cut(s)	42, 72, 121, 992, 2112
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	6 cut(s)	541, 780, 1004, 1987, 2312, 2966
HapII	CCGG	5 cut(s)	251, 899, 2435, 2943, 2969
HgaI	GACGC	1 cut(s)	2569
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	2 cut(s)	1737, 2476
HindII	GTYRAC	2 cut(s)	1737, 2476
HindIII	AAGCTT	1 cut(s)	2554
HpaI	GTTAAC	1 cut(s)	1737
HpaII	CCGG	5 cut(s)	251, 899, 2435, 2943, 2969
Hpy166II	GTNNAC	5 cut(s)	732, 1737, 2115, 2330, 2476
Hpy8I	GTNNAC	5 cut(s)	732, 1737, 2115, 2330, 2476
Hpy99I	CGWCG	1 cut(s)	121
HpyCH4III	ACNGT	5 cut(s)	335, 527, 1609, 2038, 2751
HpyCH4IV	ACGT	4 cut(s)	341, 1201, 2284, 2893
HpySE526I	ACGT	4 cut(s)	341, 1201, 2284, 2893
Hsp92I	GRCGYC	1 cut(s)	437
HspAI	GCGC	1 cut(s)	437
KasI	GGCGCC	1 cut(s)	436
Kpn2I	TCCGGA	1 cut(s)	2434
KpnI	GGTACC	1 cut(s)	1578
Ksp22I	TGATCA	1 cut(s)	649
KspAI	GTTAAC	1 cut(s)	1737
LguI	GCTCTTC	1 cut(s)	2551
LmnI	GCTCC	4 cut(s)	53, 262, 1473, 1646
MaeI	CTAG	3 cut(s)	762, 1418, 2810
MaeII	ACGT	4 cut(s)	341, 1201, 2284, 2893
MaeIII	GTNAC	3 cut(s)	349, 401, 552
MfeI	CAATTG	2 cut(s)	888, 2379
MflI	RGATCY	3 cut(s)	1956, 1974, 2972
MhlI	GDGCHC	2 cut(s)	1478, 2546
MlsI	TGGCCA	1 cut(s)	1987
MluNI	TGGCCA	1 cut(s)	1987
Mly113I	GGCGCC	1 cut(s)	437
MlyI	GAGTC	5 cut(s)	605, 1791, 1912, 1941, 2509
MmeI	TCCRAC	3 cut(s)	1668, 2238, 2821
Mox20I	TGGCCA	1 cut(s)	1987
Mph1103I	ATGCAT	4 cut(s)	1241, 1250, 1306, 2595
MroI	TCCGGA	1 cut(s)	2434
MscI	TGGCCA	1 cut(s)	1987
MslI	CAYNNNNRTG	7 cut(s)	306, 459, 515, 547, 625, 1305, 2342
Msp20I	TGGCCA	1 cut(s)	1987
MspA1I	CMGCKG	2 cut(s)	131, 470
MspCI	CTTAAG	1 cut(s)	661
MspI	CCGG	5 cut(s)	251, 899, 2435, 2943, 2969
MunI	CAATTG	2 cut(s)	888, 2379
Mva1269I	GAATGC	1 cut(s)	1681
MvaI	CCWGG	6 cut(s)	538, 767, 777, 1010, 1150, 1693
NarI	GGCGCC	1 cut(s)	437
NciI	CCSGG	4 cut(s)	251, 252, 2969, 2970
NcoI	CCATGG	1 cut(s)	2410
NdeI	CATATG	1 cut(s)	544
NlaIV	GGNNCC	9 cut(s)	150, 438, 633, 1576, 1642, 1812, 1976, 2295, 2967
NmuCI	GTSAC	3 cut(s)	349, 401, 552
NsiI	ATGCAT	4 cut(s)	1241, 1250, 1306, 2595
NspI	RCATGY	3 cut(s)	863, 1304, 1308
PaeI	GCATGC	1 cut(s)	1304
PagI	TCATGA	2 cut(s)	460, 1381
PaqCI	CACCTGC	1 cut(s)	1822
PciSI	GCTCTTC	1 cut(s)	2551
PctI	GAATGC	1 cut(s)	1681
PfeI	GAWTC	7 cut(s)	224, 446, 1153, 1700, 2011, 2045, 2363
PflFI	GACNNNGTC	1 cut(s)	1609
PflMI	CCANNNNNTGG	3 cut(s)	83, 158, 2090
PleI	GAGTC	5 cut(s)	604, 1790, 1911, 1940, 2508
PluTI	GGCGCC	1 cut(s)	440
PpsI	GAGTC	5 cut(s)	604, 1790, 1911, 1940, 2508
Ppu21I	YACGTR	2 cut(s)	1202, 2894
PsiI	TTATAA	2 cut(s)	1764, 2697
Psp124BI	GAGCTC	1 cut(s)	2546
Psp1406I	AACGTT	1 cut(s)	341
Psp6I	CCWGG	6 cut(s)	536, 765, 775, 1008, 1148, 1691
PspFI	CCCAGC	3 cut(s)	131, 1343, 1628
PspGI	CCWGG	6 cut(s)	536, 765, 775, 1008, 1148, 1691
PspN4I	GGNNCC	9 cut(s)	150, 438, 633, 1576, 1642, 1812, 1976, 2295, 2967
PspPI	GGNCC	4 cut(s)	877, 1003, 1026, 2965
PstI	CTGCAG	3 cut(s)	130, 745, 1964
PsuI	RGATCY	3 cut(s)	1956, 1974, 2972
PsyI	GACNNNGTC	1 cut(s)	1609
PvuII	CAGCTG	2 cut(s)	131, 470
RsaI	GTAC	9 cut(s)	760, 845, 955, 1200, 1576, 1852, 2040, 2214, 2753
RsaNI	GTAC	9 cut(s)	759, 844, 954, 1199, 1575, 1851, 2039, 2213, 2752
RseI	CAYNNNNRTG	7 cut(s)	306, 459, 515, 547, 625, 1305, 2342
SacI	GAGCTC	1 cut(s)	2546
SapI	GCTCTTC	1 cut(s)	2551
Sau96I	GGNCC	4 cut(s)	877, 1003, 1026, 2965
SchI	GAGTC	5 cut(s)	605, 1791, 1912, 1941, 2509
SduI	GDGCHC	2 cut(s)	1478, 2546
SfcI	CTRYAG	4 cut(s)	126, 741, 1883, 1960
SfoI	GGCGCC	1 cut(s)	438
SinI	GGWCC	2 cut(s)	877, 1026
SmaI	CCCGGG	2 cut(s)	252, 2970
SmiMI	CAYNNNNRTG	7 cut(s)	306, 459, 515, 547, 625, 1305, 2342
SmlI	CTYRAG	6 cut(s)	661, 1322, 1873, 1907, 2801, 2867
SmoI	CTYRAG	6 cut(s)	661, 1322, 1873, 1907, 2801, 2867
SpeI	ACTAGT	1 cut(s)	1417
SphI	GCATGC	1 cut(s)	1304
SsiI	CCGC	2 cut(s)	275, 380
SspDI	GGCGCC	1 cut(s)	436
SspI	AATATT	1 cut(s)	2182
SspMI	CTAG	3 cut(s)	762, 1418, 2810
SstI	GAGCTC	1 cut(s)	2546
StyI	CCWWGG	2 cut(s)	2313, 2410
TaaI	ACNGT	5 cut(s)	335, 527, 1609, 2038, 2751
TaiI	ACGT	4 cut(s)	344, 1204, 2287, 2896
TaqI	TCGA	7 cut(s)	176, 222, 722, 1207, 1673, 2606, 2672
TatI	WGTACW	3 cut(s)	953, 1850, 2038
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	7 cut(s)	224, 446, 1153, 1700, 2011, 2045, 2363
TscAI	CASTG	8 cut(s)	84, 159, 1061, 1489, 1614, 1654, 2095, 2848
TseFI	GTSAC	3 cut(s)	349, 401, 552
Tsp45I	GTSAC	3 cut(s)	349, 401, 552
TspGWI	ACGGA	1 cut(s)	869
TspMI	CCCGGG	2 cut(s)	250, 2968
TspRI	CASTG	8 cut(s)	84, 159, 1061, 1489, 1614, 1654, 2095, 2848
Tth111I	GACNNNGTC	1 cut(s)	1609
Van91I	CCANNNNNTGG	3 cut(s)	83, 158, 2090
Vha464I	CTTAAG	1 cut(s)	661
VpaK11BI	GGWCC	2 cut(s)	877, 1026
XapI	RAATTY	2 cut(s)	217, 612
XbaI	TCTAGA	1 cut(s)	2809
XceI	RCATGY	3 cut(s)	863, 1304, 1308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmaI	CCCGGG	2 cut(s)	250, 2968
XmiI	GTMKAC	1 cut(s)	2114
XspI	CTAG	3 cut(s)	762, 1418, 2810
Zsp2I	ATGCAT	4 cut(s)	1241, 1250, 1306, 2595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.