Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003599

Physical Location & Seq

Genomic Coordinates Forward (+)

23277997 .. 23280561

Gene Structure 2565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0233300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGAACACAAAAGGTACTGAGAGGGAGATAGGGACTCTGTCACTAACTGGAAATTGTCGGTTGCCTGCTGCTGCTGATGCTTCTTTTATTGTATTTCTGCAAGGAAGAGAACATTTGACGAAGCTAACTTCACCCGGTACCTTTAACAGCACCAGGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCACTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGATATTGGTGCAGACAACGGTTTGGTTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGCCTGATGACAAGTATGAGTTCTCAGAGACTGCCCGGATCCAGAGTTTGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGCGTAAGATGACAGATGAGCAGGCAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGTCGGTGAATGTCTATGTGGGAATGCGCTTCGGGACTCAACAAATACATGTAACCCTTTATATGACTGCAATTGCTTCCCAGTCCACTTTGGTACAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

208

Amino Acids

22.36

Weight (kDa)

5.74

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	132 - 183	1.4e-09	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT3G59580 AT3G59580 AT3G59580
fragaria_vesca	FvH4_1g24430 FvH4_1g24430 FvH4_1g24430
malus_domestica	MD04G1116200.v1.1 MD12G1131800.v1.1
prunus_persica	Prupe.1G200100_v2.0.a1
pyrus_communis	pycom04g10620 pycom12g12770
rosa_chinensis	RchiOBHm_Chr2g0121311
rosa_laevigata	RLG00000018617
rosa_multiflora	Rmu_sc0000079.1_g000028 Rmu_sc0000315.1_g000101
rosa_roxburghii	Rroxscaffold_2G00122460
rosa_rugosa	Rorug02G0233300 Rorug02G0233400 Rorug02G0233500
rosa_samantha	Rh2AG290100 Rh2BG301000 Rh2CG279700 Rh2DG314900
rosa_wichuraiana	Rw2G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	140, 206
AccB1I	GGYRCC	2 cut(s)	140, 206
AccB7I	CCANNNNNTGG	2 cut(s)	376, 617
AclWI	GGATC	2 cut(s)	361, 374
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	5 cut(s)	19, 142, 208, 226, 585
AfiI	CCNNNNNNNGG	2 cut(s)	376, 617
AflIII	ACRYGT	2 cut(s)	489, 538
AgsI	TTSAA	1 cut(s)	231
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	361, 374
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	3 cut(s)	71, 74, 328
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp718I	GGTACC	2 cut(s)	140, 206
AspLEI	GCGC	1 cut(s)	519
AsuC2I	CCSGG	2 cut(s)	138, 364
AsuHPI	GGTGA	3 cut(s)	126, 417, 508
BamHI	GGATCC	1 cut(s)	366
BanI	GGYRCC	2 cut(s)	140, 206
BbvI	GCAGC	3 cut(s)	58, 61, 340
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	157
BciVI	GTATCC	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	138, 364
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	411, 623
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	3 cut(s)	72, 75, 329
BlsI	GCNGC	3 cut(s)	73, 76, 330
Bme1390I	CCNGG	3 cut(s)	138, 157, 364
BmiI	GGNNCC	3 cut(s)	142, 208, 368
BmrFI	CCNGG	3 cut(s)	138, 157, 364
BmrI	ACTGGG	1 cut(s)	565
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	565
BpuMI	CCSGG	2 cut(s)	138, 364
BsaJI	CCNNGG	2 cut(s)	156, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 617
Bse1I	ACTGG	3 cut(s)	55, 169, 571
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	2 cut(s)	156, 202
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	376, 617
BseMII	CTCAG	3 cut(s)	12, 230, 366
BseNI	ACTGG	3 cut(s)	55, 169, 571
BseXI	GCAGC	3 cut(s)	58, 61, 340
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	621
BshNI	GGYRCC	2 cut(s)	140, 206
BsiSI	CCGG	2 cut(s)	138, 364
BslFI	GGGAC	2 cut(s)	49, 538
BslI	CCNNNNNNNGG	2 cut(s)	376, 617
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	49, 538
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	621
Bsp143I	GATC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	3 cut(s)	13, 229, 365
BspLI	GGNNCC	3 cut(s)	142, 208, 368
BspPI	GGATC	2 cut(s)	361, 374
BspT107I	GGYRCC	2 cut(s)	140, 206
BsrI	ACTGG	3 cut(s)	55, 169, 571
BssECI	CCNNGG	2 cut(s)	156, 202
BssMI	GATC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	69, 453
BstDEI	CTNAG	3 cut(s)	21, 216, 352
BstF5I	GGATG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	157
BstNSI	RCATGY	2 cut(s)	493, 542
BstSCI	CCNGG	3 cut(s)	136, 155, 362
BstSFI	CTRYAG	2 cut(s)	411, 623
BstV1I	GCAGC	3 cut(s)	58, 61, 340
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	210, 461
Cac8I	GCNNGC	2 cut(s)	69, 453
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	519
Csp6I	GTAC	5 cut(s)	18, 141, 207, 225, 584
CviAII	CATG	2 cut(s)	490, 539
CviJI	RGCY	5 cut(s)	127, 245, 331, 473, 621
CviKI_1	RGCY	5 cut(s)	127, 245, 331, 473, 621
CviQI	GTAC	5 cut(s)	18, 141, 207, 225, 584
DdeI	CTNAG	3 cut(s)	21, 216, 352
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	493, 542
FaiI	YATR	8 cut(s)	345, 405, 413, 491, 507, 540, 552, 554
FaqI	GGGAC	2 cut(s)	49, 538
FatI	CATG	2 cut(s)	489, 538
Fnu4HI	GCNGC	3 cut(s)	72, 75, 329
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	72, 75, 329
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	72, 75, 329
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	2 cut(s)	138, 364
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	2 cut(s)	493, 542
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	37, 479, 526
HpaII	CCGG	2 cut(s)	138, 364
HphI	GGTGA	3 cut(s)	126, 417, 508
Hpy166II	GTNNAC	2 cut(s)	425, 576
Hpy188I	TCNGA	3 cut(s)	219, 249, 355
Hpy188III	TCNNGA	3 cut(s)	238, 370, 523
Hpy8I	GTNNAC	2 cut(s)	425, 576
HpyAV	CCTTC	3 cut(s)	175, 244, 392
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	103, 263, 461, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	21, 216, 352
Hsp92II	CATG	2 cut(s)	493, 542
HspAI	GCGC	1 cut(s)	517
KpnI	GGTACC	2 cut(s)	144, 210
Kzo9I	GATC	1 cut(s)	366
Lsp1109I	GCAGC	3 cut(s)	58, 61, 340
LweI	GCATC	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	42, 541
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	1 cut(s)	120
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	4 cut(s)	55, 233, 284, 561
MlyI	GAGTC	2 cut(s)	31, 520
MnlI	CCTC	3 cut(s)	18, 178, 410
MseI	TTAA	2 cut(s)	147, 389
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	2 cut(s)	138, 364
MspR9I	CCNGG	3 cut(s)	138, 157, 364
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	2 cut(s)	138, 364
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	2 cut(s)	493, 542
NlaIV	GGNNCC	3 cut(s)	142, 208, 368
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	2 cut(s)	493, 542
PciI	ACATGT	2 cut(s)	489, 538
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	40
PflMI	CCANNNNNTGG	2 cut(s)	376, 617
PkrI	GCNGC	3 cut(s)	73, 76, 330
PleI	GAGTC	2 cut(s)	31, 520
PpsI	GAGTC	2 cut(s)	31, 520
PscI	ACATGT	2 cut(s)	489, 538
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	3 cut(s)	142, 208, 368
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	5 cut(s)	19, 142, 208, 226, 585
RsaNI	GTAC	5 cut(s)	18, 141, 207, 225, 584
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	147, 389
SatI	GCNGC	3 cut(s)	72, 75, 329
Sau3AI	GATC	1 cut(s)	366
SchI	GAGTC	2 cut(s)	31, 520
ScrFI	CCNGG	3 cut(s)	138, 157, 364
SetI	ASST	6 cut(s)	19, 129, 146, 421, 595, 606
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	2 cut(s)	411, 623
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	4 cut(s)	55, 233, 284, 561
StyD4I	CCNGG	3 cut(s)	136, 155, 362
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	272
TasI	AATT	4 cut(s)	55, 233, 284, 561
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	147, 389
Tru9I	TTAA	2 cut(s)	147, 389
TscAI	CASTG	2 cut(s)	217, 468
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	3 cut(s)	71, 74, 328
Tsp45I	GTSAC	1 cut(s)	42
TspRI	CASTG	2 cut(s)	217, 468
Tth111I	GACNNNGTC	1 cut(s)	40
Van91I	CCANNNNNTGG	2 cut(s)	376, 617
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	493, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.