Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g25550 |
| malus_domestica | MD05G1093400.v1.1 MD10G1100300.v1.1 |
| prunus_persica | Prupe.8G138100_v2.0.a1 |
| pyrus_communis | pycom05g09250 pycom10g08630 |
| rosa_chinensis | RchiOBHm_Chr2g0123701 |
| rosa_laevigata | RLG00000018770 |
| rosa_multiflora | Rmu_sc0004915.1_g000001 Rmu_sc0006911.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00120410 |
| rosa_rugosa | Rorug02G0247400 |
| rosa_samantha | Rh2AG306400 Rh2BG314800 Rh2CG292800 Rh2DG330100 |
| rosa_wichuraiana | Rw2G024580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1119 |
| AatII | GACGTC | 1 cut(s) | 1447 |
| Acc16I | TGCGCA | 1 cut(s) | 681 |
| Acc36I | ACCTGC | 2 cut(s) | 700, 1119 |
| Acc65I | GGTACC | 1 cut(s) | 1388 |
| AccB1I | GGYRCC | 2 cut(s) | 248, 1388 |
| AccBSI | CCGCTC | 1 cut(s) | 327 |
| AccII | CGCG | 1 cut(s) | 832 |
| AciI | CCGC | 4 cut(s) | 325, 742, 1695, 1762 |
| AclWI | GGATC | 5 cut(s) | 217, 427, 539, 1043, 1817 |
| AcsI | RAATTY | 4 cut(s) | 23, 736, 1188, 1835 |
| AcyI | GRCGYC | 2 cut(s) | 249, 1444 |
| AfaI | GTAC | 1 cut(s) | 1390 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 554, 638, 1039, 1227, 1385, 1543 |
| AflIII | ACRYGT | 2 cut(s) | 795, 1212 |
| AgsI | TTSAA | 6 cut(s) | 73, 358, 418, 1291, 1456, 1673 |
| AjnI | CCWGG | 3 cut(s) | 189, 564, 1795 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1827, 1859 |
| AluBI | AGCT | 5 cut(s) | 127, 1123, 1550, 1646, 1884 |
| AluI | AGCT | 5 cut(s) | 127, 1123, 1550, 1646, 1884 |
| Alw21I | GWGCWC | 2 cut(s) | 1105, 1606 |
| Alw26I | GTCTC | 2 cut(s) | 284, 1753 |
| AlwI | GGATC | 5 cut(s) | 217, 427, 539, 1043, 1817 |
| Ama87I | CYCGRG | 3 cut(s) | 746, 1527, 1553 |
| AoxI | GGCC | 6 cut(s) | 388, 562, 702, 743, 1335, 1534 |
| ApeKI | GCWGC | 3 cut(s) | 651, 964, 1416 |
| ApoI | RAATTY | 4 cut(s) | 23, 736, 1188, 1835 |
| AseI | ATTAAT | 1 cut(s) | 1818 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 107 |
| Asp718I | GGTACC | 1 cut(s) | 1388 |
| AspLEI | GCGC | 2 cut(s) | 251, 682 |
| AspS9I | GGNCC | 4 cut(s) | 194, 388, 744, 1336 |
| AsuC2I | CCSGG | 1 cut(s) | 532 |
| AsuHPI | GGTGA | 6 cut(s) | 448, 1093, 1249, 1476, 1754, 1912 |
| AvaI | CYCGRG | 3 cut(s) | 746, 1527, 1553 |
| AvaII | GGWCC | 1 cut(s) | 194 |
| AxyI | CCTNAGG | 1 cut(s) | 1340 |
| BanI | GGYRCC | 2 cut(s) | 248, 1388 |
| BanII | GRGCYC | 1 cut(s) | 605 |
| Bbv12I | GWGCWC | 2 cut(s) | 1105, 1606 |
| BbvCI | CCTCAGC | 2 cut(s) | 368, 696 |
| BbvI | GCAGC | 3 cut(s) | 638, 951, 1428 |
| BccI | CCATC | 6 cut(s) | 718, 926, 1033, 1258, 1731, 1891 |
| BceAI | ACGGC | 1 cut(s) | 466 |
| BciT130I | CCWGG | 3 cut(s) | 191, 566, 1797 |
| BclI | TGATCA | 3 cut(s) | 1258, 1299, 1729 |
| BcnI | CCSGG | 1 cut(s) | 532 |
| BcoDI | GTCTC | 2 cut(s) | 284, 1753 |
| BfaI | CTAG | 3 cut(s) | 1193, 1538, 1632 |
| BfmI | CTRYAG | 1 cut(s) | 1801 |
| BfoI | RGCGCY | 1 cut(s) | 252 |
| BfuAI | ACCTGC | 2 cut(s) | 700, 1119 |
| BisI | GCNGC | 4 cut(s) | 652, 743, 965, 1417 |
| BlsI | GCNGC | 4 cut(s) | 653, 744, 966, 1418 |
| Bme1390I | CCNGG | 4 cut(s) | 191, 532, 566, 1797 |
| Bme18I | GGWCC | 1 cut(s) | 194 |
| BmeT110I | CYCGRG | 3 cut(s) | 746, 1527, 1553 |
| BmgT120I | GGNCC | 4 cut(s) | 194, 388, 744, 1336 |
| BmiI | GGNNCC | 3 cut(s) | 195, 250, 1390 |
| BmrFI | CCNGG | 4 cut(s) | 191, 532, 566, 1797 |
| BmrI | ACTGGG | 1 cut(s) | 88 |
| BmsI | GCATC | 3 cut(s) | 742, 1733, 1838 |
| BmuI | ACTGGG | 1 cut(s) | 88 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1469 |
| BpmI | CTGGAG | 2 cut(s) | 173, 203 |
| Bpu10I | CCTNAGC | 2 cut(s) | 368, 696 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 1089 |
| BpuMI | CCSGG | 1 cut(s) | 532 |
| Bsa29I | ATCGAT | 1 cut(s) | 1735 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1852 |
| BsaHI | GRCGYC | 2 cut(s) | 249, 1444 |
| BsaJI | CCNNGG | 5 cut(s) | 190, 582, 747, 968, 1396 |
| BsaWI | WCCGGW | 2 cut(s) | 686, 1032 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 554, 638, 1039, 1227, 1385, 1543 |
| Bse118I | RCCGGY | 2 cut(s) | 671, 1691 |
| Bse1I | ACTGG | 1 cut(s) | 83 |
| Bse21I | CCTNAGG | 1 cut(s) | 1340 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1852 |
| BseBI | CCWGG | 3 cut(s) | 191, 566, 1797 |
| BseCI | ATCGAT | 1 cut(s) | 1735 |
| BseDI | CCNNGG | 5 cut(s) | 190, 582, 747, 968, 1396 |
| BseGI | GGATG | 4 cut(s) | 757, 1853, 1858, 1902 |
| BseJI | GATNNNNATC | 1 cut(s) | 1852 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 554, 638, 1039, 1227, 1385, 1543 |
| BseMII | CTCAG | 6 cut(s) | 382, 687, 1354, 1437, 1482, 1748 |
| BseNI | ACTGG | 1 cut(s) | 83 |
| BseRI | GAGGAG | 7 cut(s) | 156, 176, 206, 291, 356, 713, 1346 |
| BseXI | GCAGC | 3 cut(s) | 638, 951, 1428 |
| BsgI | GTGCAG | 1 cut(s) | 591 |
| Bsh1236I | CGCG | 1 cut(s) | 832 |
| BshFI | GGCC | 6 cut(s) | 390, 564, 704, 745, 1337, 1536 |
| BshNI | GGYRCC | 2 cut(s) | 248, 1388 |
| BshVI | ATCGAT | 1 cut(s) | 1735 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1105, 1606 |
| BsiHKCI | CYCGRG | 3 cut(s) | 746, 1527, 1553 |
| BsiSI | CCGG | 5 cut(s) | 531, 672, 687, 1033, 1692 |
| BslFI | GGGAC | 1 cut(s) | 394 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 554, 638, 1039, 1227, 1385, 1543 |
| BsmAI | GTCTC | 2 cut(s) | 284, 1753 |
| BsmBI | CGTCTC | 1 cut(s) | 284 |
| BsmFI | GGGAC | 1 cut(s) | 394 |
| BsmI | GAATGC | 2 cut(s) | 979, 1246 |
| BsnI | GGCC | 6 cut(s) | 390, 564, 704, 745, 1337, 1536 |
| BsoBI | CYCGRG | 3 cut(s) | 746, 1527, 1553 |
| Bsp1286I | GDGCHC | 3 cut(s) | 605, 1105, 1606 |
| Bsp143I | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| Bsp68I | TCGCGA | 1 cut(s) | 832 |
| BspACI | CCGC | 4 cut(s) | 325, 742, 1695, 1762 |
| BspANI | GGCC | 6 cut(s) | 390, 564, 704, 745, 1337, 1536 |
| BspCNI | CTCAG | 6 cut(s) | 381, 688, 1353, 1436, 1481, 1749 |
| BspDI | ATCGAT | 1 cut(s) | 1735 |
| BspFNI | CGCG | 1 cut(s) | 832 |
| BspHI | TCATGA | 2 cut(s) | 1138, 1302 |
| BspLI | GGNNCC | 3 cut(s) | 195, 250, 1390 |
| BspMI | ACCTGC | 2 cut(s) | 700, 1119 |
| BspPI | GGATC | 5 cut(s) | 217, 427, 539, 1043, 1817 |
| BspQI | GCTCTTC | 1 cut(s) | 908 |
| BspT107I | GGYRCC | 2 cut(s) | 248, 1388 |
| BsrBI | CCGCTC | 1 cut(s) | 327 |
| BsrFI | RCCGGY | 2 cut(s) | 671, 1691 |
| BsrI | ACTGG | 1 cut(s) | 83 |
| BssAI | RCCGGY | 2 cut(s) | 671, 1691 |
| BssECI | CCNNGG | 5 cut(s) | 190, 582, 747, 968, 1396 |
| BssMI | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| BssNI | GRCGYC | 2 cut(s) | 249, 1444 |
| BssT1I | CCWWGG | 3 cut(s) | 582, 968, 1396 |
| Bst2UI | CCWGG | 3 cut(s) | 191, 566, 1797 |
| Bst4CI | ACNGT | 5 cut(s) | 39, 47, 874, 1322, 1874 |
| Bst6I | CTCTTC | 7 cut(s) | 157, 174, 353, 398, 419, 908, 1756 |
| BstACI | GRCGYC | 2 cut(s) | 249, 1444 |
| BstC8I | GCNNGC | 5 cut(s) | 673, 1414, 1507, 1534, 1710 |
| BstDEI | CTNAG | 9 cut(s) | 175, 368, 696, 867, 1340, 1423, 1468, 1642, 1757 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| BstF5I | GGATG | 4 cut(s) | 757, 1853, 1858, 1902 |
| BstFNI | CGCG | 1 cut(s) | 832 |
| BstH2I | RGCGCY | 1 cut(s) | 252 |
| BstHHI | GCGC | 2 cut(s) | 251, 682 |
| BstKTI | GATC | 9 cut(s) | 225, 435, 547, 1051, 1261, 1302, 1519, 1732, 1812 |
| BstMAI | GTCTC | 2 cut(s) | 284, 1753 |
| BstMBI | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 95, 578, 677, 701, 961, 1409, 1579 |
| BstNI | CCWGG | 3 cut(s) | 191, 566, 1797 |
| BstNSI | RCATGY | 3 cut(s) | 799, 1216, 1416 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1469 |
| BstSCI | CCNGG | 4 cut(s) | 189, 530, 564, 1795 |
| BstSFI | CTRYAG | 1 cut(s) | 1801 |
| BstUI | CGCG | 1 cut(s) | 832 |
| BstV1I | GCAGC | 3 cut(s) | 638, 951, 1428 |
| BstX2I | RGATCY | 3 cut(s) | 222, 432, 1048 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1367 |
| BstYI | RGATCY | 3 cut(s) | 222, 432, 1048 |
| Bsu15I | ATCGAT | 1 cut(s) | 1735 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1340 |
| BsuRI | GGCC | 6 cut(s) | 390, 564, 704, 745, 1337, 1536 |
| BsuTUI | ATCGAT | 1 cut(s) | 1735 |
| BtgZI | GCGATG | 1 cut(s) | 253 |
| BtsCI | GGATG | 4 cut(s) | 757, 1853, 1858, 1902 |
| BtsI | GCAGTG | 1 cut(s) | 1197 |
| BtsIMutI | CAGTG | 3 cut(s) | 772, 1197, 1327 |
| BtuMI | TCGCGA | 1 cut(s) | 832 |
| BveI | ACCTGC | 2 cut(s) | 700, 1119 |
| Cac8I | GCNNGC | 5 cut(s) | 673, 1414, 1507, 1534, 1710 |
| CciI | TCATGA | 2 cut(s) | 1138, 1302 |
| CfoI | GCGC | 2 cut(s) | 251, 682 |
| Cfr10I | RCCGGY | 2 cut(s) | 671, 1691 |
| Cfr13I | GGNCC | 4 cut(s) | 194, 388, 744, 1336 |
| ClaI | ATCGAT | 1 cut(s) | 1735 |
| Csp6I | GTAC | 1 cut(s) | 1389 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 463, 498 |
| CviQI | GTAC | 1 cut(s) | 1389 |
| DdeI | CTNAG | 9 cut(s) | 175, 368, 696, 867, 1340, 1423, 1468, 1642, 1757 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 9 cut(s) | 224, 434, 546, 1050, 1260, 1301, 1518, 1731, 1811 |
| DpnII | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| Eam1104I | CTCTTC | 7 cut(s) | 157, 174, 353, 398, 419, 908, 1756 |
| EarI | CTCTTC | 7 cut(s) | 157, 174, 353, 398, 419, 908, 1756 |
| Eco130I | CCWWGG | 3 cut(s) | 582, 968, 1396 |
| Eco147I | AGGCCT | 2 cut(s) | 704, 1536 |
| Eco24I | GRGCYC | 1 cut(s) | 605 |
| Eco47I | GGWCC | 1 cut(s) | 194 |
| Eco81I | CCTNAGG | 1 cut(s) | 1340 |
| Eco88I | CYCGRG | 3 cut(s) | 746, 1527, 1553 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| EcoO109I | RGGNCCY | 3 cut(s) | 194, 388, 1336 |
| EcoRI | GAATTC | 1 cut(s) | 1188 |
| EcoRII | CCWGG | 3 cut(s) | 189, 564, 1795 |
| EcoT14I | CCWWGG | 3 cut(s) | 582, 968, 1396 |
| EcoT22I | ATGCAT | 1 cut(s) | 1720 |
| EcoT38I | GRGCYC | 1 cut(s) | 605 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| ErhI | CCWWGG | 3 cut(s) | 582, 968, 1396 |
| Esp3I | CGTCTC | 1 cut(s) | 284 |
| FaqI | GGGAC | 1 cut(s) | 394 |
| FauNDI | CATATG | 1 cut(s) | 1908 |
| FbaI | TGATCA | 3 cut(s) | 1258, 1299, 1729 |
| Fnu4HI | GCNGC | 4 cut(s) | 652, 743, 965, 1417 |
| FokI | GGATG | 4 cut(s) | 764, 1845, 1860, 1909 |
| FriOI | GRGCYC | 1 cut(s) | 605 |
| Fsp4HI | GCNGC | 4 cut(s) | 652, 743, 965, 1417 |
| FspBI | CTAG | 3 cut(s) | 1193, 1538, 1632 |
| FspI | TGCGCA | 1 cut(s) | 681 |
| GlaI | GCGC | 2 cut(s) | 250, 681 |
| GluI | GCNGC | 4 cut(s) | 652, 743, 965, 1417 |
| GsuI | CTGGAG | 2 cut(s) | 173, 203 |
| HaeII | RGCGCY | 1 cut(s) | 252 |
| HaeIII | GGCC | 6 cut(s) | 390, 564, 704, 745, 1337, 1536 |
| HapII | CCGG | 5 cut(s) | 531, 672, 687, 1033, 1692 |
| HhaI | GCGC | 2 cut(s) | 251, 682 |
| Hin1I | GRCGYC | 2 cut(s) | 249, 1444 |
| Hin6I | GCGC | 2 cut(s) | 249, 680 |
| HinP1I | GCGC | 2 cut(s) | 249, 680 |
| HincII | GTYRAC | 1 cut(s) | 1318 |
| HindII | GTYRAC | 1 cut(s) | 1318 |
| HinfI | GANTC | 7 cut(s) | 84, 318, 488, 787, 823, 860, 1306 |
| HpaI | GTTAAC | 1 cut(s) | 1318 |
| HpaII | CCGG | 5 cut(s) | 531, 672, 687, 1033, 1692 |
| HphI | GGTGA | 6 cut(s) | 448, 1093, 1249, 1476, 1754, 1912 |
| Hpy166II | GTNNAC | 2 cut(s) | 1318, 1373 |
| Hpy188III | TCNNGA | 8 cut(s) | 220, 791, 831, 1013, 1139, 1303, 1553, 1632 |
| Hpy8I | GTNNAC | 2 cut(s) | 1318, 1373 |
| Hpy99I | CGWCG | 1 cut(s) | 557 |
| HpyCH4III | ACNGT | 5 cut(s) | 39, 47, 874, 1322, 1874 |
| HpyCH4IV | ACGT | 1 cut(s) | 1444 |
| HpyCH4V | TGCA | 8 cut(s) | 608, 709, 1244, 1412, 1416, 1718, 1724, 1831 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 95, 578, 677, 701, 961, 1409, 1579 |
| HpyF3I | CTNAG | 9 cut(s) | 175, 368, 696, 867, 1340, 1423, 1468, 1642, 1757 |
| HpySE526I | ACGT | 1 cut(s) | 1444 |
| Hsp92I | GRCGYC | 2 cut(s) | 249, 1444 |
| HspAI | GCGC | 2 cut(s) | 249, 680 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| KpnI | GGTACC | 1 cut(s) | 1392 |
| KroI | GCCGGC | 1 cut(s) | 671 |
| KroNI | GCCGGC | 1 cut(s) | 673 |
| Ksp22I | TGATCA | 3 cut(s) | 1258, 1299, 1729 |
| KspAI | GTTAAC | 1 cut(s) | 1318 |
| Kzo9I | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| LguI | GCTCTTC | 1 cut(s) | 908 |
| LmnI | GCTCC | 1 cut(s) | 332 |
| Lsp1109I | GCAGC | 3 cut(s) | 638, 951, 1428 |
| LweI | GCATC | 3 cut(s) | 742, 1733, 1838 |
| MaeI | CTAG | 3 cut(s) | 1193, 1538, 1632 |
| MaeII | ACGT | 1 cut(s) | 1444 |
| MaeIII | GTNAC | 4 cut(s) | 689, 1072, 1783, 1868 |
| MalI | GATC | 9 cut(s) | 224, 434, 546, 1050, 1260, 1301, 1518, 1731, 1811 |
| MbiI | CCGCTC | 1 cut(s) | 327 |
| MboI | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| MboII | GAAGA | 9 cut(s) | 144, 161, 229, 340, 385, 406, 925, 1743, 1924 |
| MfeI | CAATTG | 1 cut(s) | 1920 |
| MflI | RGATCY | 3 cut(s) | 222, 432, 1048 |
| MhlI | GDGCHC | 3 cut(s) | 605, 1105, 1606 |
| MluCI | AATT | 7 cut(s) | 23, 57, 736, 1188, 1490, 1835, 1920 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 3 cut(s) | 796, 854, 1315 |
| MmeI | TCCRAC | 3 cut(s) | 837, 1787, 1825 |
| Mph1103I | ATGCAT | 1 cut(s) | 1720 |
| MroNI | GCCGGC | 1 cut(s) | 671 |
| MroXI | GAANNNNTTC | 1 cut(s) | 107 |
| MseI | TTAA | 5 cut(s) | 56, 729, 1176, 1317, 1818 |
| MslI | CAYNNNNRTG | 1 cut(s) | 516 |
| MspI | CCGG | 5 cut(s) | 531, 672, 687, 1033, 1692 |
| MspR9I | CCNGG | 4 cut(s) | 191, 532, 566, 1797 |
| MunI | CAATTG | 1 cut(s) | 1920 |
| Mva1269I | GAATGC | 2 cut(s) | 979, 1246 |
| MvaI | CCWGG | 3 cut(s) | 191, 566, 1797 |
| MvnI | CGCG | 1 cut(s) | 832 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 95, 578, 677, 701, 961, 1409, 1579 |
| NaeI | GCCGGC | 1 cut(s) | 673 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NciI | CCSGG | 1 cut(s) | 532 |
| NdeI | CATATG | 1 cut(s) | 1908 |
| NdeII | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| NgoMIV | GCCGGC | 1 cut(s) | 671 |
| NlaIV | GGNNCC | 3 cut(s) | 195, 250, 1390 |
| NmuCI | GTSAC | 2 cut(s) | 1783, 1868 |
| NruI | TCGCGA | 1 cut(s) | 832 |
| NsbI | TGCGCA | 1 cut(s) | 681 |
| NsiI | ATGCAT | 1 cut(s) | 1720 |
| NspI | RCATGY | 3 cut(s) | 799, 1216, 1416 |
| PaeI | GCATGC | 1 cut(s) | 1416 |
| PaeR7I | CTCGAG | 1 cut(s) | 1553 |
| PagI | TCATGA | 2 cut(s) | 1138, 1302 |
| PaqCI | CACCTGC | 1 cut(s) | 1119 |
| PceI | AGGCCT | 2 cut(s) | 704, 1536 |
| PciI | ACATGT | 2 cut(s) | 795, 1212 |
| PciSI | GCTCTTC | 1 cut(s) | 908 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 782 |
| PctI | GAATGC | 2 cut(s) | 979, 1246 |
| PdiI | GCCGGC | 1 cut(s) | 673 |
| PdmI | GAANNNNTTC | 1 cut(s) | 107 |
| PfeI | GAWTC | 4 cut(s) | 84, 318, 488, 823 |
| PkrI | GCNGC | 4 cut(s) | 653, 744, 966, 1418 |
| PleI | GAGTC | 3 cut(s) | 795, 854, 1314 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PpsI | GAGTC | 3 cut(s) | 795, 854, 1314 |
| PpuMI | RGGWCCY | 1 cut(s) | 194 |
| PscI | ACATGT | 2 cut(s) | 795, 1212 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1469 |
| PshBI | ATTAAT | 1 cut(s) | 1818 |
| Psp5II | RGGWCCY | 1 cut(s) | 194 |
| Psp6I | CCWGG | 3 cut(s) | 189, 564, 1795 |
| PspGI | CCWGG | 3 cut(s) | 189, 564, 1795 |
| PspN4I | GGNNCC | 3 cut(s) | 195, 250, 1390 |
| PspPI | GGNCC | 4 cut(s) | 194, 388, 744, 1336 |
| PspPPI | RGGWCCY | 1 cut(s) | 194 |
| PsuI | RGATCY | 3 cut(s) | 222, 432, 1048 |
| RruI | TCGCGA | 1 cut(s) | 832 |
| RsaI | GTAC | 1 cut(s) | 1390 |
| RsaNI | GTAC | 1 cut(s) | 1389 |
| RseI | CAYNNNNRTG | 1 cut(s) | 516 |
| SapI | GCTCTTC | 1 cut(s) | 908 |
| SaqAI | TTAA | 5 cut(s) | 56, 729, 1176, 1317, 1818 |
| SatI | GCNGC | 4 cut(s) | 652, 743, 965, 1417 |
| Sau3AI | GATC | 9 cut(s) | 222, 432, 544, 1048, 1258, 1299, 1516, 1729, 1809 |
| Sau96I | GGNCC | 4 cut(s) | 194, 388, 744, 1336 |
| SchI | GAGTC | 3 cut(s) | 796, 854, 1315 |
| ScrFI | CCNGG | 4 cut(s) | 191, 532, 566, 1797 |
| SduI | GDGCHC | 3 cut(s) | 605, 1105, 1606 |
| SfaNI | GCATC | 3 cut(s) | 742, 1733, 1838 |
| SfcI | CTRYAG | 1 cut(s) | 1801 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| Sfr274I | CTCGAG | 1 cut(s) | 1553 |
| SinI | GGWCC | 1 cut(s) | 194 |
| SlaI | CTCGAG | 1 cut(s) | 1553 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 516 |
| SmlI | CTYRAG | 3 cut(s) | 128, 1104, 1553 |
| SmoI | CTYRAG | 3 cut(s) | 128, 1104, 1553 |
| SphI | GCATGC | 1 cut(s) | 1416 |
| Sse9I | AATT | 7 cut(s) | 23, 57, 736, 1188, 1490, 1835, 1920 |
| SseBI | AGGCCT | 2 cut(s) | 704, 1536 |
| SsiI | CCGC | 4 cut(s) | 325, 742, 1695, 1762 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| SspI | AATATT | 1 cut(s) | 1452 |
| SspMI | CTAG | 3 cut(s) | 1193, 1538, 1632 |
| StuI | AGGCCT | 2 cut(s) | 704, 1536 |
| StyD4I | CCNGG | 4 cut(s) | 189, 530, 564, 1795 |
| StyI | CCWWGG | 3 cut(s) | 582, 968, 1396 |
| TaaI | ACNGT | 5 cut(s) | 39, 47, 874, 1322, 1874 |
| TaiI | ACGT | 1 cut(s) | 1447 |
| TaqI | TCGA | 5 cut(s) | 785, 1057, 1271, 1554, 1735 |
| TasI | AATT | 7 cut(s) | 23, 57, 736, 1188, 1490, 1835, 1920 |
| TauI | GCSGC | 1 cut(s) | 745 |
| TfiI | GAWTC | 4 cut(s) | 84, 318, 488, 823 |
| Tru1I | TTAA | 5 cut(s) | 56, 729, 1176, 1317, 1818 |
| Tru9I | TTAA | 5 cut(s) | 56, 729, 1176, 1317, 1818 |
| TscAI | CASTG | 3 cut(s) | 772, 1204, 1327 |
| TseFI | GTSAC | 2 cut(s) | 1783, 1868 |
| TseI | GCWGC | 3 cut(s) | 651, 964, 1416 |
| Tsp45I | GTSAC | 2 cut(s) | 1783, 1868 |
| TspDTI | ATGAA | 7 cut(s) | 116, 485, 639, 1127, 1155, 1848, 1925 |
| TspGWI | ACGGA | 1 cut(s) | 625 |
| TspRI | CASTG | 3 cut(s) | 772, 1204, 1327 |
| VpaK11BI | GGWCC | 1 cut(s) | 194 |
| VspI | ATTAAT | 1 cut(s) | 1818 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| XapI | RAATTY | 4 cut(s) | 23, 736, 1188, 1835 |
| XbaI | TCTAGA | 1 cut(s) | 1631 |
| XceI | RCATGY | 3 cut(s) | 799, 1216, 1416 |
| XhoI | CTCGAG | 1 cut(s) | 1553 |
| XmnI | GAANNNNTTC | 1 cut(s) | 107 |
| XspI | CTAG | 3 cut(s) | 1193, 1538, 1632 |
| ZraI | GACGTC | 1 cut(s) | 1445 |
| Zsp2I | ATGCAT | 1 cut(s) | 1720 |