RchiOBHm_Chr2g0123701

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014644
Physical Location & Seq
Forward (+)
36971983 .. 36976738
4756 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49597

Sequence Viewer

Length: 1923 bp
ATGAAACGACGTTTGCTCATAAATGTCCCAAATATAATCAATGGCTTTTCAAACTTTGGGGCATCCCCCTCCATATACCAAAATAGCATGAACTTGTTTCTCTCATCTCAAAAGCTCAAGTCATCTCACATCTCTGCCGACTTAGCTGCTCTGCTACAAGGTCGTATCTCACACTCTCATCTCCTTCAAATCCATGCCCGAATCTTTGTTCTTGGTGCTCACCACGACGACTTGATAGCCACTCGTCTCATTGGCCACTACCCATCTCACATTGCTCTCCGTGTCTTTCATGGCCTCCGAAAACCCAATGTGTTCCCTTTCAACGCCATCATCAGGGTCTTCGCCGAACAGGGTCTCTTCTCCAGTGCCTTCTCCCTCTTCAAAACCCTGAAACAGAGCTCCCTTTCGCCCAATGACTTCACCTTCTCTTTCCTCCTCAAGTCGTGTAGCTTTCGCTGCGGGGATTCTGTTTATGTCAAGCAAATTCACACCCATGTTGTGAGGATGGGCTTTCTTCGCAACGAGTTCGTCTGTAATGGCCTGCTTGCTGTGTATGCTAAGGGACTCAAGGATCTGGGTTCTGCACGCCAGGTGTTTGATGAAATGCCTCACAAGGGTGTGGTTTGCTGTTGGACGTCTTTAATTGCTGGCTATGCTCAGTCAGGGAAGGCTGAGGAAGCTTTGCGGTTATTCGTGGTGATGGTTAAGGGAGATTTGCGGCCGGAGGATGATACAATGGTCAGTGTTTTATCCGCTTGTTCGAATCTTGACATGTCAAAGATTGAGAAATGGGTTTTGATTCTGTCCCGAGTTTTCGACAATGTGGATTCTAAGAATGTTGGTTCCGACTCCGTTAACACTGTACTGGTATATCTGTATGGGAAATGGGGGAAAATAGAGAAGAGCAGGGAAGCATTTGATGGAATTTCTGACAGTGGGAAGCCAAGTGTGCTGCCTTGGAATGCTATTATCGGTGCATACGTTCAGAATGGTTTTCCTGTGGAGTCTTTAAGTGTTTTCCGCGTAATGGTGGGAGATCCCACTCGTAAACCTAACCATGTTACTATGGTCAGTGTGCTTTCAGCCTGTGCTCAAGTTGGCGATTTAGAGCTTGGTAGATGGGTTCATGAATACTTGAAATCTAAAGGAAATAGAGGTGTGATTGGATCAAACAGAATTCTAGCCACTGCATTGATTGACATGTATTCCAAATGTGGGAGTTTGGAGAAGGCAAAAGAGGTTTTTCATCAGATGGTGTCGAAAGACATTGTTTCATTCAATGCTATGATCATGGGTCTTGCAGTTAACAGTGAAGGAGAGGAAGCCCTGAGGCTATTCTCAAAAATCCAAGATTTTGGTTTACAACCCAATGCTGGTACCTTCCTTGGTGCTTTATGTGCATGCAACCACTCAGGTTTTTCAGAGGAAGGGCATCAAATATTCAAGGATATGACCTCAGGCTTTTCCATTTCACCTAAATTAGAACATTATGCCTGCTATATTGATCTCCTTGCCCGAGTAGGCCTAGTTGAAGAAGCTCTCGAGGTTGTAACTTCCATGCCTTTTGAGCCTAACAGTATTGTGTGGGGTGCTCTGCTTGGAGGTTGCCTGCTCCACTCTAGATTAGACTATGCTGAATATGTTTCCCGTAAACTTGTTCAATCTGACCCCAACAATACCGGGGGTTATGTCATGCTGGCTAATGCATTTGCGTCTGATCATCGATGGGGTGATGTCTCTTCTCTGAGGCGGTTTATGAGGGAAAAGGGAGTGACCAAGCAGCCTGGCTGTAGTTGGATCAGCATTAATGGTGTTGTGCATGAATTTCTCGTTGGATGCTCGTCACATTCTCAAAGTGAAAGTATAAGTAGCATACTAAATGGATTGGTGAAACAAATGAAGATAGCAATTGACATACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

640

Amino Acids

70.57

Weight (kDa)

8.7

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 102 - 149 7.1e-10 PPR repeat family
PPR_2 PF13041 208 - 254 3.4e-07 PPR repeat family
PPR PF01535 210 - 236 5.6e-06 PPR repeat
PPR_2 PF13041 421 - 463 7e-07 PPR repeat family
E_motif PF20431 539 - 600 2.6e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25550
malus_domestica MD05G1093400.v1.1 MD10G1100300.v1.1
prunus_persica Prupe.8G138100_v2.0.a1
pyrus_communis pycom05g09250 pycom10g08630
rosa_chinensis RchiOBHm_Chr2g0123701
rosa_laevigata RLG00000018770
rosa_multiflora Rmu_sc0004915.1_g000001 Rmu_sc0006911.1_g000001
rosa_roxburghii Rroxscaffold_2G00120410
rosa_rugosa Rorug02G0247400
rosa_samantha Rh2AG306400 Rh2BG314800 Rh2CG292800 Rh2DG330100
rosa_wichuraiana Rw2G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 638
Acc65I GGTACC 1 cut(s) 1376
AccB1I GGYRCC 1 cut(s) 1376
AccII CGCG 1 cut(s) 1023
AciI CCGC 6 cut(s) 459, 685, 718, 753, 1021, 1750
AclWI GGATC 4 cut(s) 579, 1031, 1174, 1805
AcoI YGGCCR 2 cut(s) 253, 719
AcsI RAATTY 4 cut(s) 483, 924, 1176, 1823
AcyI GRCGYC 1 cut(s) 635
AfaI GTAC 2 cut(s) 864, 1378
AfiI CCNNNNNNNGG 5 cut(s) 333, 614, 1027, 1215, 1373
AflIII ACRYGT 2 cut(s) 771, 1200
AgsI TTSAA 9 cut(s) 51, 188, 322, 382, 1138, 1279, 1444, 1532, 1661
AjnI CCWGG 2 cut(s) 588, 1783
AjuI GAANNNNNNNTTGG 2 cut(s) 1815, 1847
AleI CACNNNNGTG 1 cut(s) 615
AluBI AGCT 7 cut(s) 115, 146, 399, 450, 680, 1111, 1538
AluI AGCT 7 cut(s) 115, 146, 399, 450, 680, 1111, 1538
Alw21I GWGCWC 4 cut(s) 220, 401, 1093, 1594
Alw26I GTCTC 3 cut(s) 251, 359, 1741
AlwI GGATC 4 cut(s) 579, 1031, 1174, 1805
Ama87I CYCGRG 3 cut(s) 807, 1515, 1541
AoxI GGCC 5 cut(s) 253, 292, 538, 719, 1522
ApeKI GCWGC 4 cut(s) 146, 456, 952, 1780
ApoI RAATTY 4 cut(s) 483, 924, 1176, 1823
AseI ATTAAT 1 cut(s) 1806
Asp718I GGTACC 1 cut(s) 1376
AsuC2I CCSGG 1 cut(s) 1681
AsuHPI GGTGA 6 cut(s) 212, 412, 709, 1464, 1742, 1900
AsuII TTCGAA 1 cut(s) 761
AvaI CYCGRG 3 cut(s) 807, 1515, 1541
AxyI CCTNAGG 2 cut(s) 1328, 1456
BaeI ACNNNNGTAYC 2 cut(s) 723, 756
BalI TGGCCA 1 cut(s) 255
BanI GGYRCC 1 cut(s) 1376
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 4 cut(s) 220, 401, 1093, 1594
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 4 cut(s) 133, 443, 939, 1792
BccI CCATC 8 cut(s) 271, 335, 499, 694, 914, 1113, 1246, 1719
BcgI CGANNNNNNTGC 4 cut(s) 128, 162, 508, 542
BciT130I CCWGG 2 cut(s) 590, 1785
BclI TGATCA 2 cut(s) 1287, 1717
BcnI CCSGG 1 cut(s) 1681
BcoDI GTCTC 3 cut(s) 251, 359, 1741
BfaI CTAG 3 cut(s) 1181, 1526, 1620
BfmI CTRYAG 1 cut(s) 1789
BisI GCNGC 5 cut(s) 147, 457, 719, 953, 1781
BlsI GCNGC 5 cut(s) 148, 458, 720, 954, 1782
Bme1390I CCNGG 3 cut(s) 590, 1681, 1785
BmeT110I CYCGRG 3 cut(s) 807, 1515, 1541
BmiI GGNNCC 2 cut(s) 844, 1378
BmrFI CCNGG 3 cut(s) 590, 1681, 1785
BmsI GCATC 3 cut(s) 71, 1441, 1826
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 346
Bpu10I CCTNAGC 2 cut(s) 558, 672
Bpu14I TTCGAA 1 cut(s) 761
BpuEI CTTGAG 4 cut(s) 101, 422, 551, 1077
BpuMI CCSGG 1 cut(s) 1681
Bsa29I ATCGAT 1 cut(s) 1723
BsaHI GRCGYC 1 cut(s) 635
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 956, 1384, 1680
Bsc4I CCNNNNNNNGG 5 cut(s) 333, 614, 1027, 1215, 1373
Bse1I ACTGG 2 cut(s) 363, 870
Bse21I CCTNAGG 2 cut(s) 1328, 1456
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 590, 1785
BseCI ATCGAT 1 cut(s) 1723
BseDI CCNNGG 3 cut(s) 956, 1384, 1680
BseGI GGATG 4 cut(s) 62, 510, 733, 1841
BseLI CCNNNNNNNGG 5 cut(s) 333, 614, 1027, 1215, 1373
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 6 cut(s) 663, 671, 1319, 1425, 1470, 1736
BseNI ACTGG 2 cut(s) 363, 870
BseRI GAGGAG 1 cut(s) 425
BseX3I CGGCCG 1 cut(s) 719
BseXI GCAGC 4 cut(s) 133, 443, 939, 1792
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 1023
Bsh1285I CGRYCG 1 cut(s) 722
BshFI GGCC 5 cut(s) 255, 294, 540, 721, 1524
BshNI GGYRCC 1 cut(s) 1376
BshVI ATCGAT 1 cut(s) 1723
BsiEI CGRYCG 1 cut(s) 722
BsiHKAI GWGCWC 4 cut(s) 220, 401, 1093, 1594
BsiHKCI CYCGRG 3 cut(s) 807, 1515, 1541
BsiSI CCGG 2 cut(s) 722, 1680
BslFI GGGAC 3 cut(s) 11, 576, 790
BslI CCNNNNNNNGG 5 cut(s) 333, 614, 1027, 1215, 1373
BsmAI GTCTC 3 cut(s) 251, 359, 1741
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 3 cut(s) 11, 576, 790
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 5 cut(s) 255, 294, 540, 721, 1524
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 3 cut(s) 807, 1515, 1541
Bsp119I TTCGAA 1 cut(s) 761
Bsp1286I GDGCHC 4 cut(s) 220, 401, 1093, 1594
Bsp143I GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
BspACI CCGC 6 cut(s) 459, 685, 718, 753, 1021, 1750
BspANI GGCC 5 cut(s) 255, 294, 540, 721, 1524
BspCNI CTCAG 6 cut(s) 664, 670, 1320, 1424, 1469, 1737
BspDI ATCGAT 1 cut(s) 1723
BspFNI CGCG 1 cut(s) 1023
BspHI TCATGA 1 cut(s) 1126
BspLI GGNNCC 2 cut(s) 844, 1378
BspPI GGATC 4 cut(s) 579, 1031, 1174, 1805
BspQI GCTCTTC 1 cut(s) 896
BspT104I TTCGAA 1 cut(s) 761
BspT107I GGYRCC 1 cut(s) 1376
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 2 cut(s) 363, 870
BssECI CCNNGG 3 cut(s) 956, 1384, 1680
BssMI GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
BssNI GRCGYC 1 cut(s) 635
BssT1I CCWWGG 2 cut(s) 956, 1384
Bst2UI CCWGG 2 cut(s) 590, 1785
Bst4CI ACNGT 4 cut(s) 862, 935, 1310, 1577
Bst6I CTCTTC 4 cut(s) 362, 383, 896, 1744
BstACI GRCGYC 1 cut(s) 635
BstBI TTCGAA 1 cut(s) 761
BstC8I GCNNGC 8 cut(s) 542, 546, 586, 649, 1402, 1495, 1610, 1698
BstDEI CTNAG 9 cut(s) 142, 558, 657, 672, 831, 1328, 1411, 1456, 1745
BstF5I GGATG 4 cut(s) 62, 510, 733, 1841
BstFNI CGCG 1 cut(s) 1023
BstKTI GATC 7 cut(s) 574, 1039, 1169, 1290, 1507, 1720, 1800
BstMAI GTCTC 3 cut(s) 251, 359, 1741
BstMBI GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
BstMCI CGRYCG 1 cut(s) 722
BstMWI GCNNNNNNNGC 9 cut(s) 143, 456, 516, 554, 653, 677, 949, 1397, 1567
BstNI CCWGG 2 cut(s) 590, 1785
BstNSI RCATGY 3 cut(s) 775, 1204, 1404
BstSCI CCNGG 3 cut(s) 588, 1679, 1783
BstSFI CTRYAG 1 cut(s) 1789
BstUI CGCG 1 cut(s) 1023
BstV1I GCAGC 4 cut(s) 133, 443, 939, 1792
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 2 cut(s) 571, 1036
BstXI CCANNNNNNTGG 1 cut(s) 1355
BstYI RGATCY 2 cut(s) 571, 1036
BstZI CGGCCG 1 cut(s) 719
Bsu15I ATCGAT 1 cut(s) 1723
Bsu36I CCTNAGG 2 cut(s) 1328, 1456
BsuRI GGCC 5 cut(s) 255, 294, 540, 721, 1524
BsuTUI ATCGAT 1 cut(s) 1723
BtsCI GGATG 4 cut(s) 62, 510, 733, 1841
BtsI GCAGTG 1 cut(s) 1185
BtsIMutI CAGTG 7 cut(s) 370, 748, 858, 940, 1078, 1185, 1315
Cac8I GCNNGC 8 cut(s) 542, 546, 586, 649, 1402, 1495, 1610, 1698
CciI TCATGA 1 cut(s) 1126
ClaI ATCGAT 1 cut(s) 1723
CseI GACGC 1 cut(s) 1701
Csp6I GTAC 2 cut(s) 863, 1377
CviQI GTAC 2 cut(s) 863, 1377
DdeI CTNAG 9 cut(s) 142, 558, 657, 672, 831, 1328, 1411, 1456, 1745
DpnI GATC 7 cut(s) 573, 1038, 1168, 1289, 1506, 1719, 1799
DpnII GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
EaeI YGGCCR 2 cut(s) 253, 719
EagI CGGCCG 1 cut(s) 719
Eam1104I CTCTTC 4 cut(s) 362, 383, 896, 1744
EarI CTCTTC 4 cut(s) 362, 383, 896, 1744
Ecl136II GAGCTC 1 cut(s) 399
EclXI CGGCCG 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 956, 1384
Eco147I AGGCCT 1 cut(s) 1524
Eco24I GRGCYC 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 359
Eco52I CGGCCG 1 cut(s) 719
Eco53kI GAGCTC 1 cut(s) 399
Eco81I CCTNAGG 2 cut(s) 1328, 1456
Eco88I CYCGRG 3 cut(s) 807, 1515, 1541
EcoICRI GAGCTC 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 1176
EcoRII CCWGG 2 cut(s) 588, 1783
EcoT14I CCWWGG 2 cut(s) 956, 1384
EcoT22I ATGCAT 1 cut(s) 1708
EcoT38I GRGCYC 1 cut(s) 401
ErhI CCWWGG 2 cut(s) 956, 1384
Esp3I CGTCTC 1 cut(s) 251
FaqI GGGAC 3 cut(s) 11, 576, 790
FauI CCCGC 1 cut(s) 452
FbaI TGATCA 2 cut(s) 1287, 1717
Fnu4HI GCNGC 5 cut(s) 147, 457, 719, 953, 1781
FokI GGATG 4 cut(s) 49, 517, 740, 1848
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 5 cut(s) 147, 457, 719, 953, 1781
FspBI CTAG 3 cut(s) 1181, 1526, 1620
GluI GCNGC 5 cut(s) 147, 457, 719, 953, 1781
GsuI CTGGAG 1 cut(s) 346
HaeIII GGCC 5 cut(s) 255, 294, 540, 721, 1524
HapII CCGG 2 cut(s) 722, 1680
HgaI GACGC 1 cut(s) 1701
Hin1I GRCGYC 1 cut(s) 635
HincII GTYRAC 2 cut(s) 856, 1306
HindII GTYRAC 2 cut(s) 856, 1306
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 8 cut(s) 201, 464, 564, 763, 799, 827, 848, 1004
HpaI GTTAAC 2 cut(s) 856, 1306
HpaII CCGG 2 cut(s) 722, 1680
HphI GGTGA 6 cut(s) 212, 412, 709, 1464, 1742, 1900
Hpy166II GTNNAC 5 cut(s) 856, 1049, 1306, 1361, 1652
Hpy188I TCNGA 9 cut(s) 299, 847, 931, 987, 1251, 1423, 1666, 1717, 1746
Hpy188III TCNNGA 5 cut(s) 767, 807, 1127, 1541, 1620
Hpy8I GTNNAC 5 cut(s) 856, 1049, 1306, 1361, 1652
Hpy99I CGWCG 2 cut(s) 12, 230
HpyAV CCTTC 8 cut(s) 194, 379, 433, 661, 1222, 1307, 1390, 1421
HpyCH4III ACNGT 4 cut(s) 862, 935, 1310, 1577
HpyCH4IV ACGT 3 cut(s) 10, 635, 981
HpyCH4V TGCA 8 cut(s) 584, 977, 1190, 1301, 1400, 1404, 1706, 1819
HpyF10VI GCNNNNNNNGC 9 cut(s) 143, 456, 516, 554, 653, 677, 949, 1397, 1567
HpyF3I CTNAG 9 cut(s) 142, 558, 657, 672, 831, 1328, 1411, 1456, 1745
HpySE526I ACGT 3 cut(s) 10, 635, 981
Hsp92I GRCGYC 1 cut(s) 635
KpnI GGTACC 1 cut(s) 1380
Ksp22I TGATCA 2 cut(s) 1287, 1717
KspAI GTTAAC 2 cut(s) 856, 1306
Kzo9I GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
LguI GCTCTTC 1 cut(s) 896
LmnI GCTCC 2 cut(s) 404, 1617
Lsp1109I GCAGC 4 cut(s) 133, 443, 939, 1792
LweI GCATC 3 cut(s) 71, 1441, 1826
MaeI CTAG 3 cut(s) 1181, 1526, 1620
MaeII ACGT 3 cut(s) 10, 635, 981
MaeIII GTNAC 4 cut(s) 1060, 1549, 1771, 1842
MalI GATC 7 cut(s) 573, 1038, 1168, 1289, 1506, 1719, 1799
MboI GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
MboII GAAGA 8 cut(s) 331, 349, 370, 506, 913, 1544, 1731, 1912
MfeI CAATTG 1 cut(s) 1908
MflI RGATCY 2 cut(s) 571, 1036
MhlI GDGCHC 4 cut(s) 220, 401, 1093, 1594
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 7 cut(s) 483, 642, 924, 1176, 1478, 1823, 1908
MluNI TGGCCA 1 cut(s) 255
MlyI GAGTC 3 cut(s) 558, 842, 1013
MmeI TCCRAC 4 cut(s) 611, 870, 1775, 1813
Mox20I TGGCCA 1 cut(s) 255
Mph1103I ATGCAT 1 cut(s) 1708
MscI TGGCCA 1 cut(s) 255
MseI TTAA 6 cut(s) 641, 705, 855, 1010, 1305, 1806
MslI CAYNNNNRTG 2 cut(s) 492, 615
Msp20I TGGCCA 1 cut(s) 255
MspI CCGG 2 cut(s) 722, 1680
MspR9I CCNGG 3 cut(s) 590, 1681, 1785
MunI CAATTG 1 cut(s) 1908
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 2 cut(s) 590, 1785
MvnI CGCG 1 cut(s) 1023
MwoI GCNNNNNNNGC 9 cut(s) 143, 456, 516, 554, 653, 677, 949, 1397, 1567
NciI CCSGG 1 cut(s) 1681
NdeII GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
NlaIV GGNNCC 2 cut(s) 844, 1378
NmuCI GTSAC 2 cut(s) 1771, 1842
NsiI ATGCAT 1 cut(s) 1708
NspI RCATGY 3 cut(s) 775, 1204, 1404
NspV TTCGAA 1 cut(s) 761
OliI CACNNNNGTG 1 cut(s) 615
PaeI GCATGC 1 cut(s) 1404
PaeR7I CTCGAG 1 cut(s) 1541
PagI TCATGA 1 cut(s) 1126
PceI AGGCCT 1 cut(s) 1524
PciI ACATGT 2 cut(s) 771, 1200
PciSI GCTCTTC 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 978
PctI GAATGC 1 cut(s) 967
PfeI GAWTC 5 cut(s) 201, 464, 763, 799, 827
PkrI GCNGC 5 cut(s) 148, 458, 720, 954, 1782
PleI GAGTC 3 cut(s) 558, 842, 1012
PpsI GAGTC 3 cut(s) 558, 842, 1012
PscI ACATGT 2 cut(s) 771, 1200
PshBI ATTAAT 1 cut(s) 1806
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 588, 1783
PspGI CCWGG 2 cut(s) 588, 1783
PspN4I GGNNCC 2 cut(s) 844, 1378
PsuI RGATCY 2 cut(s) 571, 1036
RsaI GTAC 2 cut(s) 864, 1378
RsaNI GTAC 2 cut(s) 863, 1377
RseI CAYNNNNRTG 2 cut(s) 492, 615
SacI GAGCTC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 896
SaqAI TTAA 6 cut(s) 641, 705, 855, 1010, 1305, 1806
SatI GCNGC 5 cut(s) 147, 457, 719, 953, 1781
Sau3AI GATC 7 cut(s) 571, 1036, 1166, 1287, 1504, 1717, 1797
SchI GAGTC 3 cut(s) 558, 842, 1013
ScrFI CCNGG 3 cut(s) 590, 1681, 1785
SduI GDGCHC 4 cut(s) 220, 401, 1093, 1594
SfaNI GCATC 3 cut(s) 71, 1441, 1826
SfcI CTRYAG 1 cut(s) 1789
Sfr274I CTCGAG 1 cut(s) 1541
SfuI TTCGAA 1 cut(s) 761
SlaI CTCGAG 1 cut(s) 1541
SmiMI CAYNNNNRTG 2 cut(s) 492, 615
SmlI CTYRAG 5 cut(s) 116, 437, 566, 1092, 1541
SmoI CTYRAG 5 cut(s) 116, 437, 566, 1092, 1541
SphI GCATGC 1 cut(s) 1404
Sse9I AATT 7 cut(s) 483, 642, 924, 1176, 1478, 1823, 1908
SseBI AGGCCT 1 cut(s) 1524
SsiI CCGC 6 cut(s) 459, 685, 718, 753, 1021, 1750
SspI AATATT 1 cut(s) 1440
SspMI CTAG 3 cut(s) 1181, 1526, 1620
SstI GAGCTC 1 cut(s) 401
StuI AGGCCT 1 cut(s) 1524
StyD4I CCNGG 3 cut(s) 588, 1679, 1783
StyI CCWWGG 2 cut(s) 956, 1384
TaaI ACNGT 4 cut(s) 862, 935, 1310, 1577
TaiI ACGT 3 cut(s) 13, 638, 984
TaqI TCGA 5 cut(s) 761, 816, 1259, 1542, 1723
TasI AATT 7 cut(s) 483, 642, 924, 1176, 1478, 1823, 1908
TatI WGTACW 1 cut(s) 862
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 5 cut(s) 201, 464, 763, 799, 827
Tru1I TTAA 6 cut(s) 641, 705, 855, 1010, 1305, 1806
Tru9I TTAA 6 cut(s) 641, 705, 855, 1010, 1305, 1806
TscAI CASTG 7 cut(s) 370, 748, 865, 940, 1078, 1192, 1315
TseFI GTSAC 2 cut(s) 1771, 1842
TseI GCWGC 4 cut(s) 146, 456, 952, 1780
Tsp45I GTSAC 2 cut(s) 1771, 1842
TspGWI ACGGA 2 cut(s) 269, 841
TspRI CASTG 7 cut(s) 370, 748, 865, 940, 1078, 1192, 1315
VspI ATTAAT 1 cut(s) 1806
XapI RAATTY 4 cut(s) 483, 924, 1176, 1823
XbaI TCTAGA 1 cut(s) 1619
XceI RCATGY 3 cut(s) 775, 1204, 1404
XhoI CTCGAG 1 cut(s) 1541
XspI CTAG 3 cut(s) 1181, 1526, 1620
ZraI GACGTC 1 cut(s) 636
Zsp2I ATGCAT 1 cut(s) 1708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.