Rh2BG314800

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
37073682 .. 37075100
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG314800.1

Sequence Viewer

Length: 1419 bp
ATGGGCTTTCTTCGCAACGAGTTCGTCTGTAATGGCCTGCTTGCTGTGTATGCTAAGGGACTCAAGGATCTGGGTTCTGCACGCCAGGTGTTTGATGAAATGCCTCACAAGGGTGTGGTTTGCTGTTGGACGTCTTTAATTGCTGGCTATGCTCAGTCAGGGAAGGCTGAGGAAGCTTTGCGGTTATTCGTGGTGATGGTTAAGGGAGATTTGCGGCCGGAGGATGATACAATGGTCAGTGTTTTATCCGCTTGTTCGAATCTTGACATGTCAAAGATTGAGAAATGGGTTTTGATTCTGTCCCGAGTTTTCGACAATGTGGATTCTAAGAATGTTGGTTCCGACTCCGTTAACACTGTACTGGTATATCTGTATGGGAAATGGGGGAAAATAGAGAAGAGCAGGGAAGCATTTGATGGAATTTCTGACAGTGGGAAGCCAAGTGTGCTGCCTTGGAATGCTATTATCGGTGCATACGTTCAGAATGGTTTTCCTGTGGAGTCTTTAAGTGTTTTCCGCGTAATGGTGGGAGATCCCACTCGTAAACCTAACCATGTTACTATGGTCAGTGTGCTTTCAGCCTGTGCTCAAGTTGGCGATTTAGAGCTTGGTAGATGGGTTCATGAATACTTGAAATCTAAAGGAAATAGAGGTGTGATTGGATCAAACAGAATTCTAGCCACTGCATTGATTGACATGTATTCCAAATGTGGGAGTTTGGAGAAGGCAAAAGAGGTTTTTCATCAGATGGTGTCGAAAGACATTGTTTCATTCAATGCTATGATCATGGGTCTTGCAGTTAACAGTGAAGGAGAGGAAGCCCTGAGGCTATTCTCAAAAATCCAAGATTTTGGTTTACAACCCAATGCTGGTACCTTCCTTGGTGCTTTATGTGCATGCAACCACTCAGGTTTTTCAGAGGAAGGGCATCAAATATTCAAGGATATGACCTCAGGCTTTTCCATTTCACCTAAATTAGAACATTATGCCTGCTATATTGATCTCCTTGCCCGAGTAGGCCTAGTTGAAGAAGCTCTCGAGGTTGTAACTTCCATGCCTTTTGAGCCTAACAGTATTGTGTGGGGTGCTCTGCTTGGAGGTTGCCTGCTCCACTCTAGATTAGACTATGCTGAATATGTTTCCCGTAAACTTGTTCAATCTGACCCCAACAATACCGGGGGTTATGTCATGCTGGCTAATGCATTTGCGTCTGATCATCGATGGGGTGATGTCTCTTCTCTGAGGCGGTTTATGAGGGAAAAGGGAGTGACCAAGCAGCCTGGCTGTAGTTGGATCAGCATTAATGGTGTTGTGCATGAATTTCTCGTTGGATGCTCGTCACATTCTCAAAGTGAAAGTATAAGTAGCATACTAAATGGATTGGTGAAACAAATGAAGATAGCAATTGACATACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

51.68

Weight (kDa)

6.28

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 40 - 86 2.3e-07 PPR repeat family
PPR PF01535 42 - 68 3.8e-06 PPR repeat
PPR PF01535 228 - 255 9.6e-06 PPR repeat
PPR_2 PF13041 253 - 295 4.7e-07 PPR repeat family
E_motif PF20431 371 - 432 1.7e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014644)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
Acc65I GGTACC 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 872
AccII CGCG 1 cut(s) 519
AciI CCGC 5 cut(s) 181, 214, 249, 517, 1246
AclWI GGATC 4 cut(s) 75, 527, 670, 1301
AcoI YGGCCR 1 cut(s) 215
AcsI RAATTY 3 cut(s) 420, 672, 1319
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 2 cut(s) 360, 874
AfiI CCNNNNNNNGG 4 cut(s) 110, 523, 711, 869
AflIII ACRYGT 2 cut(s) 267, 696
AgsI TTSAA 5 cut(s) 634, 775, 940, 1028, 1157
AjnI CCWGG 2 cut(s) 84, 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 1311, 1343
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 3 cut(s) 176, 607, 1034
AluI AGCT 3 cut(s) 176, 607, 1034
Alw21I GWGCWC 2 cut(s) 589, 1090
Alw26I GTCTC 1 cut(s) 1237
AlwI GGATC 4 cut(s) 75, 527, 670, 1301
Ama87I CYCGRG 3 cut(s) 303, 1011, 1037
AoxI GGCC 3 cut(s) 34, 215, 1018
ApeKI GCWGC 2 cut(s) 448, 1276
ApoI RAATTY 3 cut(s) 420, 672, 1319
AseI ATTAAT 1 cut(s) 1302
Asp718I GGTACC 1 cut(s) 872
AsuC2I CCSGG 1 cut(s) 1177
AsuHPI GGTGA 4 cut(s) 205, 960, 1238, 1396
AsuII TTCGAA 1 cut(s) 257
AvaI CYCGRG 3 cut(s) 303, 1011, 1037
AxyI CCTNAGG 2 cut(s) 824, 952
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BanI GGYRCC 1 cut(s) 872
Bbv12I GWGCWC 2 cut(s) 589, 1090
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 435, 1288
BccI CCATC 5 cut(s) 190, 410, 609, 742, 1215
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 2 cut(s) 86, 1281
BclI TGATCA 2 cut(s) 783, 1213
BcnI CCSGG 1 cut(s) 1177
BcoDI GTCTC 1 cut(s) 1237
BfaI CTAG 3 cut(s) 677, 1022, 1116
BfmI CTRYAG 1 cut(s) 1285
BisI GCNGC 3 cut(s) 215, 449, 1277
BlsI GCNGC 3 cut(s) 216, 450, 1278
Bme1390I CCNGG 3 cut(s) 86, 1177, 1281
BmeT110I CYCGRG 3 cut(s) 303, 1011, 1037
BmiI GGNNCC 2 cut(s) 340, 874
BmrFI CCNGG 3 cut(s) 86, 1177, 1281
BmsI GCATC 2 cut(s) 937, 1322
Bpu10I CCTNAGC 2 cut(s) 54, 168
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 47, 573
BpuMI CCSGG 1 cut(s) 1177
Bsa29I ATCGAT 1 cut(s) 1219
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 452, 880, 1176
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 523, 711, 869
Bse1I ACTGG 1 cut(s) 366
Bse21I CCTNAGG 2 cut(s) 824, 952
BseBI CCWGG 2 cut(s) 86, 1281
BseCI ATCGAT 1 cut(s) 1219
BseDI CCNNGG 3 cut(s) 452, 880, 1176
BseGI GGATG 2 cut(s) 229, 1337
BseLI CCNNNNNNNGG 4 cut(s) 110, 523, 711, 869
BseMII CTCAG 6 cut(s) 159, 167, 815, 921, 966, 1232
BseNI ACTGG 1 cut(s) 366
BseX3I CGGCCG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 435, 1288
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 519
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 3 cut(s) 36, 217, 1020
BshNI GGYRCC 1 cut(s) 872
BshVI ATCGAT 1 cut(s) 1219
BsiEI CGRYCG 1 cut(s) 218
BsiHKAI GWGCWC 2 cut(s) 589, 1090
BsiHKCI CYCGRG 3 cut(s) 303, 1011, 1037
BsiSI CCGG 2 cut(s) 218, 1176
BslFI GGGAC 2 cut(s) 72, 286
BslI CCNNNNNNNGG 4 cut(s) 110, 523, 711, 869
BsmAI GTCTC 1 cut(s) 1237
BsmFI GGGAC 2 cut(s) 72, 286
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 3 cut(s) 36, 217, 1020
BsoBI CYCGRG 3 cut(s) 303, 1011, 1037
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 589, 1090
Bsp143I GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
BspACI CCGC 5 cut(s) 181, 214, 249, 517, 1246
BspANI GGCC 3 cut(s) 36, 217, 1020
BspCNI CTCAG 6 cut(s) 160, 166, 816, 920, 965, 1233
BspDI ATCGAT 1 cut(s) 1219
BspFNI CGCG 1 cut(s) 519
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 340, 874
BspPI GGATC 4 cut(s) 75, 527, 670, 1301
BspQI GCTCTTC 1 cut(s) 392
BspT104I TTCGAA 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 872
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 452, 880, 1176
BssMI GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 452, 880
Bst2UI CCWGG 2 cut(s) 86, 1281
Bst4CI ACNGT 4 cut(s) 358, 431, 806, 1073
Bst6I CTCTTC 2 cut(s) 392, 1240
BstACI GRCGYC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 8 cut(s) 38, 42, 82, 145, 898, 991, 1106, 1194
BstDEI CTNAG 8 cut(s) 54, 153, 168, 327, 824, 907, 952, 1241
BstF5I GGATG 2 cut(s) 229, 1337
BstFNI CGCG 1 cut(s) 519
BstKTI GATC 7 cut(s) 70, 535, 665, 786, 1003, 1216, 1296
BstMAI GTCTC 1 cut(s) 1237
BstMBI GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 7 cut(s) 12, 50, 149, 173, 445, 893, 1063
BstNI CCWGG 2 cut(s) 86, 1281
BstNSI RCATGY 3 cut(s) 271, 700, 900
BstSCI CCNGG 3 cut(s) 84, 1175, 1279
BstSFI CTRYAG 1 cut(s) 1285
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 435, 1288
BstX2I RGATCY 2 cut(s) 67, 532
BstXI CCANNNNNNTGG 1 cut(s) 851
BstYI RGATCY 2 cut(s) 67, 532
BstZI CGGCCG 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 1219
Bsu36I CCTNAGG 2 cut(s) 824, 952
BsuRI GGCC 3 cut(s) 36, 217, 1020
BsuTUI ATCGAT 1 cut(s) 1219
BtsCI GGATG 2 cut(s) 229, 1337
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 6 cut(s) 244, 354, 436, 574, 681, 811
Cac8I GCNNGC 8 cut(s) 38, 42, 82, 145, 898, 991, 1106, 1194
CciI TCATGA 1 cut(s) 622
ClaI ATCGAT 1 cut(s) 1219
CseI GACGC 1 cut(s) 1197
Csp6I GTAC 2 cut(s) 359, 873
CviAII CATG 9 cut(s) 268, 554, 623, 697, 787, 897, 1054, 1189, 1316
CviQI GTAC 2 cut(s) 359, 873
DdeI CTNAG 8 cut(s) 54, 153, 168, 327, 824, 907, 952, 1241
DpnI GATC 7 cut(s) 69, 534, 664, 785, 1002, 1215, 1295
DpnII GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
EaeI YGGCCR 1 cut(s) 215
EagI CGGCCG 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 392, 1240
EarI CTCTTC 2 cut(s) 392, 1240
EclXI CGGCCG 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 452, 880
Eco147I AGGCCT 1 cut(s) 1020
Eco52I CGGCCG 1 cut(s) 215
Eco81I CCTNAGG 2 cut(s) 824, 952
Eco88I CYCGRG 3 cut(s) 303, 1011, 1037
EcoRI GAATTC 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 84, 1279
EcoT14I CCWWGG 2 cut(s) 452, 880
EcoT22I ATGCAT 1 cut(s) 1204
ErhI CCWWGG 2 cut(s) 452, 880
FaeI CATG 9 cut(s) 271, 557, 626, 700, 790, 900, 1057, 1192, 1319
FaqI GGGAC 2 cut(s) 72, 286
FatI CATG 9 cut(s) 267, 553, 622, 696, 786, 896, 1053, 1188, 1315
FbaI TGATCA 2 cut(s) 783, 1213
Fnu4HI GCNGC 3 cut(s) 215, 449, 1277
FokI GGATG 2 cut(s) 236, 1344
Fsp4HI GCNGC 3 cut(s) 215, 449, 1277
FspBI CTAG 3 cut(s) 677, 1022, 1116
GluI GCNGC 3 cut(s) 215, 449, 1277
HaeIII GGCC 3 cut(s) 36, 217, 1020
HapII CCGG 2 cut(s) 218, 1176
HgaI GACGC 1 cut(s) 1197
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 9 cut(s) 271, 557, 626, 700, 790, 900, 1057, 1192, 1319
HincII GTYRAC 2 cut(s) 352, 802
HindII GTYRAC 2 cut(s) 352, 802
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 6 cut(s) 60, 259, 295, 323, 344, 500
HpaI GTTAAC 2 cut(s) 352, 802
HpaII CCGG 2 cut(s) 218, 1176
HphI GGTGA 4 cut(s) 205, 960, 1238, 1396
Hpy166II GTNNAC 5 cut(s) 352, 545, 802, 857, 1148
Hpy188I TCNGA 8 cut(s) 343, 427, 483, 747, 919, 1162, 1213, 1242
Hpy188III TCNNGA 5 cut(s) 263, 303, 623, 1037, 1116
Hpy8I GTNNAC 5 cut(s) 352, 545, 802, 857, 1148
HpyAV CCTTC 5 cut(s) 157, 718, 803, 886, 917
HpyCH4III ACNGT 4 cut(s) 358, 431, 806, 1073
HpyCH4IV ACGT 2 cut(s) 131, 477
HpyCH4V TGCA 8 cut(s) 80, 473, 686, 797, 896, 900, 1202, 1315
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 50, 149, 173, 445, 893, 1063
HpyF3I CTNAG 8 cut(s) 54, 153, 168, 327, 824, 907, 952, 1241
HpySE526I ACGT 2 cut(s) 131, 477
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 9 cut(s) 271, 557, 626, 700, 790, 900, 1057, 1192, 1319
KpnI GGTACC 1 cut(s) 876
Ksp22I TGATCA 2 cut(s) 783, 1213
KspAI GTTAAC 2 cut(s) 352, 802
Kzo9I GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 1 cut(s) 1113
Lsp1109I GCAGC 2 cut(s) 435, 1288
LweI GCATC 2 cut(s) 937, 1322
MaeI CTAG 3 cut(s) 677, 1022, 1116
MaeII ACGT 2 cut(s) 131, 477
MaeIII GTNAC 4 cut(s) 556, 1045, 1267, 1338
MalI GATC 7 cut(s) 69, 534, 664, 785, 1002, 1215, 1295
MboI GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
MboII GAAGA 4 cut(s) 409, 1040, 1227, 1408
MfeI CAATTG 1 cut(s) 1404
MflI RGATCY 2 cut(s) 67, 532
MhlI GDGCHC 2 cut(s) 589, 1090
MluCI AATT 6 cut(s) 138, 420, 672, 974, 1319, 1404
MlyI GAGTC 3 cut(s) 54, 338, 509
MmeI TCCRAC 4 cut(s) 107, 366, 1271, 1309
Mph1103I ATGCAT 1 cut(s) 1204
MseI TTAA 6 cut(s) 137, 201, 351, 506, 801, 1302
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 2 cut(s) 218, 1176
MspR9I CCNGG 3 cut(s) 86, 1177, 1281
MunI CAATTG 1 cut(s) 1404
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 86, 1281
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 7 cut(s) 12, 50, 149, 173, 445, 893, 1063
NciI CCSGG 1 cut(s) 1177
NdeII GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
NlaIII CATG 9 cut(s) 271, 557, 626, 700, 790, 900, 1057, 1192, 1319
NlaIV GGNNCC 2 cut(s) 340, 874
NmuCI GTSAC 2 cut(s) 1267, 1338
NsiI ATGCAT 1 cut(s) 1204
NspI RCATGY 3 cut(s) 271, 700, 900
NspV TTCGAA 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 111
PaeI GCATGC 1 cut(s) 900
PaeR7I CTCGAG 1 cut(s) 1037
PagI TCATGA 1 cut(s) 622
PceI AGGCCT 1 cut(s) 1020
PciI ACATGT 2 cut(s) 267, 696
PciSI GCTCTTC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 3 cut(s) 259, 295, 323
PkrI GCNGC 3 cut(s) 216, 450, 1278
PleI GAGTC 3 cut(s) 54, 338, 508
PpsI GAGTC 3 cut(s) 54, 338, 508
PscI ACATGT 2 cut(s) 267, 696
PshBI ATTAAT 1 cut(s) 1302
Psp6I CCWGG 2 cut(s) 84, 1279
PspGI CCWGG 2 cut(s) 84, 1279
PspN4I GGNNCC 2 cut(s) 340, 874
PsuI RGATCY 2 cut(s) 67, 532
RsaI GTAC 2 cut(s) 360, 874
RsaNI GTAC 2 cut(s) 359, 873
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 6 cut(s) 137, 201, 351, 506, 801, 1302
SatI GCNGC 3 cut(s) 215, 449, 1277
Sau3AI GATC 7 cut(s) 67, 532, 662, 783, 1000, 1213, 1293
SchI GAGTC 3 cut(s) 54, 338, 509
ScrFI CCNGG 3 cut(s) 86, 1177, 1281
SduI GDGCHC 2 cut(s) 589, 1090
SfaNI GCATC 2 cut(s) 937, 1322
SfcI CTRYAG 1 cut(s) 1285
Sfr274I CTCGAG 1 cut(s) 1037
SfuI TTCGAA 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 1037
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 3 cut(s) 62, 588, 1037
SmoI CTYRAG 3 cut(s) 62, 588, 1037
SphI GCATGC 1 cut(s) 900
Sse9I AATT 6 cut(s) 138, 420, 672, 974, 1319, 1404
SseBI AGGCCT 1 cut(s) 1020
SsiI CCGC 5 cut(s) 181, 214, 249, 517, 1246
SspI AATATT 1 cut(s) 936
SspMI CTAG 3 cut(s) 677, 1022, 1116
StuI AGGCCT 1 cut(s) 1020
StyD4I CCNGG 3 cut(s) 84, 1175, 1279
StyI CCWWGG 2 cut(s) 452, 880
TaaI ACNGT 4 cut(s) 358, 431, 806, 1073
TaiI ACGT 2 cut(s) 134, 480
TaqI TCGA 5 cut(s) 257, 312, 755, 1038, 1219
TasI AATT 6 cut(s) 138, 420, 672, 974, 1319, 1404
TatI WGTACW 1 cut(s) 358
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 3 cut(s) 259, 295, 323
Tru1I TTAA 6 cut(s) 137, 201, 351, 506, 801, 1302
Tru9I TTAA 6 cut(s) 137, 201, 351, 506, 801, 1302
TscAI CASTG 6 cut(s) 244, 361, 436, 574, 688, 811
TseFI GTSAC 2 cut(s) 1267, 1338
TseI GCWGC 2 cut(s) 448, 1276
Tsp45I GTSAC 2 cut(s) 1267, 1338
TspDTI ATGAA 7 cut(s) 111, 611, 639, 731, 759, 1332, 1409
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 6 cut(s) 244, 361, 436, 574, 688, 811
VspI ATTAAT 1 cut(s) 1302
XapI RAATTY 3 cut(s) 420, 672, 1319
XbaI TCTAGA 1 cut(s) 1115
XceI RCATGY 3 cut(s) 271, 700, 900
XhoI CTCGAG 1 cut(s) 1037
XspI CTAG 3 cut(s) 677, 1022, 1116
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.