Rmu_sc0006911.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006911.1
OG0014644
Physical Location & Seq
Forward (+)
24 .. 881
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006911.1_g000001.1.cds

Sequence Viewer

Length: 858 bp
atggtcagtgtgctttcagcctgtgctcaagttggcgatttagagcttggtaggtgggttcatgaatacttgaaatctaaaggaaatagaggtgtgattggatcaaacagaattctagccactgcattgattgacatgtattccaaatgtgggagtttggagaaggcaaaagaggtttttcatcagatggtgtcgaaagacattgtttcattcaatgctatgatcatgggtcttgcagttaacagtgaaggagaggaagccctgaggctattctcaaaaatccaagattttggtttacaacccaatgctggtaccttccttggtgctttatgtgcatgcaaccactcaggtttttcagaggaagggcatcaaatattcaaggatatgacctcaggcttttccatttcacctaaattagaacattatgcctgctatattgatctccttgcccgagtaggcctagttgaagaagctctcgaggttgtaacttccatgccttttgagcctaacagtattgtgtggggtgctctgcttggaggttgcctgctccactctagattagactatgctgaatatgtttcccgtaaacttgttcaatctgaccccaacaataccgggggttatgtcatgctggctaatgcatttgcgtctgatcatcgatggggtgatgtctcttctctgaggcggtttatgagggaaaagggagtgaccaagcagcctggctgtagttggatcagcattaatggtgttgtgcatgaatttcttgttggatgctcatcacattctcaaagtgaaagtataagtagcatactaaatggattggtgaaacaaatgaagatagcaattgacatactatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

285

Amino Acids

31.15

Weight (kDa)

6.14

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25550
malus_domestica MD05G1093400.v1.1 MD10G1100300.v1.1
prunus_persica Prupe.8G138100_v2.0.a1
pyrus_communis pycom05g09250 pycom10g08630
rosa_chinensis RchiOBHm_Chr2g0123701
rosa_laevigata RLG00000018770
rosa_multiflora Rmu_sc0004915.1_g000001 Rmu_sc0006911.1_g000001
rosa_roxburghii Rroxscaffold_2G00120410
rosa_rugosa Rorug02G0247400
rosa_samantha Rh2AG306400 Rh2BG314800 Rh2CG292800 Rh2DG330100
rosa_wichuraiana Rw2G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AciI CCGC 1 cut(s) 685
AclWI GGATC 2 cut(s) 109, 740
AcsI RAATTY 2 cut(s) 111, 758
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 150, 308
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 5 cut(s) 73, 214, 379, 467, 596
AjnI CCWGG 1 cut(s) 718
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AluBI AGCT 2 cut(s) 46, 473
AluI AGCT 2 cut(s) 46, 473
Alw21I GWGCWC 2 cut(s) 28, 529
Alw26I GTCTC 1 cut(s) 676
AlwI GGATC 2 cut(s) 109, 740
Ama87I CYCGRG 2 cut(s) 450, 476
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 2 cut(s) 111, 758
AseI ATTAAT 1 cut(s) 741
Asp718I GGTACC 1 cut(s) 311
AsuC2I CCSGG 1 cut(s) 616
AsuHPI GGTGA 3 cut(s) 399, 677, 835
AvaI CYCGRG 2 cut(s) 450, 476
AxyI CCTNAGG 2 cut(s) 263, 391
BanI GGYRCC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 28, 529
BbvI GCAGC 1 cut(s) 727
BccI CCATC 2 cut(s) 181, 654
BciT130I CCWGG 1 cut(s) 720
BclI TGATCA 2 cut(s) 222, 652
BcnI CCSGG 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 3 cut(s) 116, 461, 555
BfmI CTRYAG 1 cut(s) 724
BisI GCNGC 1 cut(s) 716
BlsI GCNGC 1 cut(s) 717
Bme1390I CCNGG 2 cut(s) 616, 720
BmeT110I CYCGRG 2 cut(s) 450, 476
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 616, 720
BmsI GCATC 2 cut(s) 376, 761
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 616
Bsa29I ATCGAT 1 cut(s) 658
BsaBI GATNNNNATC 1 cut(s) 775
BsaJI CCNNGG 2 cut(s) 319, 615
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 308
Bse21I CCTNAGG 2 cut(s) 263, 391
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 1 cut(s) 720
BseCI ATCGAT 1 cut(s) 658
BseDI CCNNGG 2 cut(s) 319, 615
BseGI GGATG 1 cut(s) 776
BseJI GATNNNNATC 1 cut(s) 775
BseLI CCNNNNNNNGG 2 cut(s) 150, 308
BseMII CTCAG 4 cut(s) 254, 360, 405, 671
BseXI GCAGC 1 cut(s) 727
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 658
BsiHKAI GWGCWC 2 cut(s) 28, 529
BsiHKCI CYCGRG 2 cut(s) 450, 476
BsiSI CCGG 1 cut(s) 615
BslI CCNNNNNNNGG 2 cut(s) 150, 308
BsmAI GTCTC 1 cut(s) 676
BsnI GGCC 1 cut(s) 459
BsoBI CYCGRG 2 cut(s) 450, 476
Bsp1286I GDGCHC 2 cut(s) 28, 529
Bsp143I GATC 5 cut(s) 101, 222, 439, 652, 732
BspACI CCGC 1 cut(s) 685
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 4 cut(s) 255, 359, 404, 672
BspDI ATCGAT 1 cut(s) 658
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 2 cut(s) 109, 740
BspT107I GGYRCC 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 319, 615
BssMI GATC 5 cut(s) 101, 222, 439, 652, 732
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 2 cut(s) 245, 512
Bst6I CTCTTC 1 cut(s) 679
BstC8I GCNNGC 4 cut(s) 337, 430, 545, 633
BstDEI CTNAG 4 cut(s) 263, 346, 391, 680
BstF5I GGATG 1 cut(s) 776
BstKTI GATC 5 cut(s) 104, 225, 442, 655, 735
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 5 cut(s) 101, 222, 439, 652, 732
BstMWI GCNNNNNNNGC 2 cut(s) 332, 502
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 2 cut(s) 139, 339
BstSCI CCNGG 2 cut(s) 614, 718
BstSFI CTRYAG 1 cut(s) 724
BstV1I GCAGC 1 cut(s) 727
BstXI CCANNNNNNTGG 1 cut(s) 290
Bsu15I ATCGAT 1 cut(s) 658
Bsu36I CCTNAGG 2 cut(s) 263, 391
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 658
BtsCI GGATG 1 cut(s) 776
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 13, 120, 250
Cac8I GCNNGC 4 cut(s) 337, 430, 545, 633
CciI TCATGA 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 658
CseI GACGC 1 cut(s) 636
Csp6I GTAC 1 cut(s) 312
CviAII CATG 7 cut(s) 62, 136, 226, 336, 493, 628, 755
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 4 cut(s) 263, 346, 391, 680
DpnI GATC 5 cut(s) 103, 224, 441, 654, 734
DpnII GATC 5 cut(s) 101, 222, 439, 652, 732
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 459
Eco81I CCTNAGG 2 cut(s) 263, 391
Eco88I CYCGRG 2 cut(s) 450, 476
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 7 cut(s) 65, 139, 229, 339, 496, 631, 758
FatI CATG 7 cut(s) 61, 135, 225, 335, 492, 627, 754
FbaI TGATCA 2 cut(s) 222, 652
Fnu4HI GCNGC 1 cut(s) 716
FokI GGATG 1 cut(s) 783
Fsp4HI GCNGC 1 cut(s) 716
FspBI CTAG 3 cut(s) 116, 461, 555
GluI GCNGC 1 cut(s) 716
HaeIII GGCC 1 cut(s) 459
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 636
Hin1II CATG 7 cut(s) 65, 139, 229, 339, 496, 631, 758
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 1 cut(s) 615
HphI GGTGA 3 cut(s) 399, 677, 835
Hpy166II GTNNAC 3 cut(s) 241, 296, 587
Hpy188I TCNGA 5 cut(s) 186, 358, 601, 652, 681
Hpy188III TCNNGA 3 cut(s) 62, 476, 555
Hpy8I GTNNAC 3 cut(s) 241, 296, 587
HpyAV CCTTC 4 cut(s) 157, 242, 325, 356
HpyCH4III ACNGT 2 cut(s) 245, 512
HpyCH4V TGCA 6 cut(s) 125, 236, 335, 339, 641, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 502
HpyF3I CTNAG 4 cut(s) 263, 346, 391, 680
Hsp92II CATG 7 cut(s) 65, 139, 229, 339, 496, 631, 758
KpnI GGTACC 1 cut(s) 315
Ksp22I TGATCA 2 cut(s) 222, 652
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 5 cut(s) 101, 222, 439, 652, 732
LmnI GCTCC 1 cut(s) 552
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 2 cut(s) 376, 761
MaeI CTAG 3 cut(s) 116, 461, 555
MaeIII GTNAC 2 cut(s) 484, 706
MalI GATC 5 cut(s) 103, 224, 441, 654, 734
MboI GATC 5 cut(s) 101, 222, 439, 652, 732
MboII GAAGA 3 cut(s) 479, 666, 847
MfeI CAATTG 1 cut(s) 843
MhlI GDGCHC 2 cut(s) 28, 529
MluCI AATT 4 cut(s) 111, 413, 758, 843
MmeI TCCRAC 2 cut(s) 710, 748
Mph1103I ATGCAT 1 cut(s) 643
MseI TTAA 2 cut(s) 240, 741
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 616, 720
MunI CAATTG 1 cut(s) 843
MvaI CCWGG 1 cut(s) 720
MwoI GCNNNNNNNGC 2 cut(s) 332, 502
NciI CCSGG 1 cut(s) 616
NdeII GATC 5 cut(s) 101, 222, 439, 652, 732
NlaIII CATG 7 cut(s) 65, 139, 229, 339, 496, 631, 758
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 706
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 2 cut(s) 139, 339
PaeI GCATGC 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 476
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 459
PciI ACATGT 1 cut(s) 135
PkrI GCNGC 1 cut(s) 717
PscI ACATGT 1 cut(s) 135
PshBI ATTAAT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 1 cut(s) 313
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 240, 741
SatI GCNGC 1 cut(s) 716
Sau3AI GATC 5 cut(s) 101, 222, 439, 652, 732
ScrFI CCNGG 2 cut(s) 616, 720
SduI GDGCHC 2 cut(s) 28, 529
SfaNI GCATC 2 cut(s) 376, 761
SfcI CTRYAG 1 cut(s) 724
Sfr274I CTCGAG 1 cut(s) 476
SlaI CTCGAG 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 27, 476
SmoI CTYRAG 2 cut(s) 27, 476
SphI GCATGC 1 cut(s) 339
Sse9I AATT 4 cut(s) 111, 413, 758, 843
SseBI AGGCCT 1 cut(s) 459
SsiI CCGC 1 cut(s) 685
SspI AATATT 1 cut(s) 375
SspMI CTAG 3 cut(s) 116, 461, 555
StuI AGGCCT 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 614, 718
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 245, 512
TaqI TCGA 3 cut(s) 194, 477, 658
TasI AATT 4 cut(s) 111, 413, 758, 843
Tru1I TTAA 2 cut(s) 240, 741
Tru9I TTAA 2 cut(s) 240, 741
TscAI CASTG 3 cut(s) 13, 127, 250
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 6 cut(s) 50, 78, 170, 198, 771, 848
TspRI CASTG 3 cut(s) 13, 127, 250
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 2 cut(s) 111, 758
XbaI TCTAGA 1 cut(s) 554
XceI RCATGY 2 cut(s) 139, 339
XhoI CTCGAG 1 cut(s) 476
XspI CTAG 3 cut(s) 116, 461, 555
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.