Rmu_sc0004915.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004915.1
OG0014644
Physical Location & Seq
Reverse (-)
2 .. 1036
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004915.1_g000001.1.cds

Sequence Viewer

Length: 1035 bp
atgaacttgtttctctcatctcaaaagctcaagtcatctcacatctctgccgacttagctgctctgctacaaggtcgtatctcacactctcatctccttcaaatccatgcccaaatctttgttcttggtgctcaccacgacgatttgatagccactcgtctcatcggccactacccatctcacattgctctccgtgtctttcatggcctccgaaaacccaatgtgttccctttcaacgccatcatcagggtcttcgccgaacagggtctcttctcctgtgccttctccctcttcaaaaccctgaaacagagctccctttcgcccaatgacttcaccttctctttcctcctcaagtcgtgtagctttcgctgcggggattctgtttatgtcaagcaaattcacacccatgttgtgaagatgggctttcttcgcaacgagttcgtctgtaatggcctgcttgctgtgtatgctaagggactcaaggatttgggttctgcacgccaggtgtttgatgaaatgcctcacaagggtgtggtttgctgttggacgtctttaattgcgggctatgctcagtcagggaaggctgaggaagctttgcggttattcgtggtgatggttaagggagttttgcggccggaggatgatacaatggtcagtgttttatcagcttgttcgaatcttgacatgtcaaagattgagaaatgggttttgattctgtcccgagttttcgacaatgtggattctaagaatgttggttccgactccgttaacactgtactggtatatctgtatgggaaatgggggaaaatagagaagagcagggaagcattcgatggaatttctgacagtgggaagcaaagtgtgctgccttggaatgctattatcggtgcatacgttcagaatggttttcctgtggagtctttaattgttttccgcgtaatggtgggagatccccctcgtaaacctaaccatgttactatggtcagtgtgctttcagcctgtgctcaagttggcgatttagagcttggtaggtgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

345

Amino Acids

38.22

Weight (kDa)

9.05

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25550
malus_domestica MD05G1093400.v1.1 MD10G1100300.v1.1
prunus_persica Prupe.8G138100_v2.0.a1
pyrus_communis pycom05g09250 pycom10g08630
rosa_chinensis RchiOBHm_Chr2g0123701
rosa_laevigata RLG00000018770
rosa_multiflora Rmu_sc0004915.1_g000001 Rmu_sc0006911.1_g000001
rosa_roxburghii Rroxscaffold_2G00120410
rosa_rugosa Rorug02G0247400
rosa_samantha Rh2AG306400 Rh2BG314800 Rh2CG292800 Rh2DG330100
rosa_wichuraiana Rw2G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 551
AccII CGCG 1 cut(s) 936
AciI CCGC 5 cut(s) 372, 560, 598, 631, 934
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 2 cut(s) 166, 632
AcsI RAATTY 2 cut(s) 396, 837
AcyI GRCGYC 1 cut(s) 548
AfaI GTAC 1 cut(s) 777
AfiI CCNNNNNNNGG 3 cut(s) 246, 527, 940
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 3 cut(s) 101, 235, 295
AjnI CCWGG 1 cut(s) 501
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AleI CACNNNNGTG 1 cut(s) 528
AluBI AGCT 7 cut(s) 28, 59, 312, 363, 593, 668, 1024
AluI AGCT 7 cut(s) 28, 59, 312, 363, 593, 668, 1024
Alw21I GWGCWC 3 cut(s) 133, 314, 1006
Alw26I GTCTC 2 cut(s) 164, 272
AlwI GGATC 1 cut(s) 944
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 4 cut(s) 166, 205, 451, 632
ApeKI GCWGC 3 cut(s) 59, 369, 865
ApoI RAATTY 2 cut(s) 396, 837
AsuHPI GGTGA 3 cut(s) 125, 325, 622
AsuII TTCGAA 1 cut(s) 674
AvaI CYCGRG 1 cut(s) 720
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BanII GRGCYC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 3 cut(s) 133, 314, 1006
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 3 cut(s) 46, 356, 852
BccI CCATC 5 cut(s) 184, 248, 412, 607, 827
BcgI CGANNNNNNTGC 4 cut(s) 41, 75, 421, 455
BciT130I CCWGG 1 cut(s) 503
BcoDI GTCTC 2 cut(s) 164, 272
BisI GCNGC 4 cut(s) 60, 370, 632, 866
BlsI GCNGC 4 cut(s) 61, 371, 633, 867
Bme1390I CCNGG 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 720
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 1 cut(s) 503
BpiI GAAGAC 1 cut(s) 244
Bpu10I CCTNAGC 2 cut(s) 471, 585
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 4 cut(s) 14, 335, 464, 990
BsaHI GRCGYC 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 869
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 527, 940
Bse1I ACTGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 869
BseGI GGATG 1 cut(s) 646
BseLI CCNNNNNNNGG 3 cut(s) 246, 527, 940
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 576, 584
BseNI ACTGG 1 cut(s) 783
BseRI GAGGAG 1 cut(s) 338
BseX3I CGGCCG 1 cut(s) 632
BseXI GCAGC 3 cut(s) 46, 356, 852
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 936
Bsh1285I CGRYCG 1 cut(s) 635
BshFI GGCC 4 cut(s) 168, 207, 453, 634
BsiEI CGRYCG 1 cut(s) 635
BsiHKAI GWGCWC 3 cut(s) 133, 314, 1006
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 2 cut(s) 489, 703
BslI CCNNNNNNNGG 3 cut(s) 246, 527, 940
BsmAI GTCTC 2 cut(s) 164, 272
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 489, 703
BsmI GAATGC 2 cut(s) 827, 880
BsnI GGCC 4 cut(s) 168, 207, 453, 634
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 720
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 3 cut(s) 133, 314, 1006
Bsp143I GATC 1 cut(s) 949
BspACI CCGC 5 cut(s) 372, 560, 598, 631, 934
BspANI GGCC 4 cut(s) 168, 207, 453, 634
BspCNI CTCAG 2 cut(s) 577, 583
BspFNI CGCG 1 cut(s) 936
BspLI GGNNCC 1 cut(s) 757
BspPI GGATC 1 cut(s) 944
BspQI GCTCTTC 1 cut(s) 809
BspT104I TTCGAA 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 783
BssECI CCNNGG 1 cut(s) 869
BssMI GATC 1 cut(s) 949
BssNI GRCGYC 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 869
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 2 cut(s) 775, 848
Bst6I CTCTTC 3 cut(s) 275, 296, 809
BstACI GRCGYC 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 862
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 4 cut(s) 455, 459, 499, 562
BstDEI CTNAG 5 cut(s) 55, 471, 570, 585, 744
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 1 cut(s) 936
BstKTI GATC 1 cut(s) 952
BstMAI GTCTC 2 cut(s) 164, 272
BstMBI GATC 1 cut(s) 949
BstMCI CGRYCG 1 cut(s) 635
BstMWI GCNNNNNNNGC 7 cut(s) 56, 369, 429, 467, 566, 590, 862
BstNI CCWGG 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 501
BstUI CGCG 1 cut(s) 936
BstV1I GCAGC 3 cut(s) 46, 356, 852
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BstZI CGGCCG 1 cut(s) 632
BsuRI GGCC 4 cut(s) 168, 207, 453, 634
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 4 cut(s) 661, 771, 853, 991
Cac8I GCNNGC 4 cut(s) 455, 459, 499, 562
Csp6I GTAC 1 cut(s) 776
CviAII CATG 5 cut(s) 107, 203, 407, 685, 971
CviQI GTAC 1 cut(s) 776
DdeI CTNAG 5 cut(s) 55, 471, 570, 585, 744
DpnI GATC 1 cut(s) 951
DpnII GATC 1 cut(s) 949
EaeI YGGCCR 2 cut(s) 166, 632
EagI CGGCCG 1 cut(s) 632
Eam1104I CTCTTC 3 cut(s) 275, 296, 809
EarI CTCTTC 3 cut(s) 275, 296, 809
Ecl136II GAGCTC 1 cut(s) 312
EclXI CGGCCG 1 cut(s) 632
Eco130I CCWWGG 1 cut(s) 869
Eco24I GRGCYC 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 272
Eco52I CGGCCG 1 cut(s) 632
Eco53kI GAGCTC 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 869
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 869
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 5 cut(s) 110, 206, 410, 688, 974
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 2 cut(s) 489, 703
FatI CATG 5 cut(s) 106, 202, 406, 684, 970
FauI CCCGC 2 cut(s) 365, 553
Fnu4HI GCNGC 4 cut(s) 60, 370, 632, 866
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 60, 370, 632, 866
GluI GCNGC 4 cut(s) 60, 370, 632, 866
HaeIII GGCC 4 cut(s) 168, 207, 453, 634
HapII CCGG 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 548
Hin1II CATG 5 cut(s) 110, 206, 410, 688, 974
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 7 cut(s) 377, 477, 676, 712, 740, 761, 917
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 1 cut(s) 635
HphI GGTGA 3 cut(s) 125, 325, 622
Hpy166II GTNNAC 2 cut(s) 769, 962
Hpy188I TCNGA 4 cut(s) 212, 760, 844, 900
Hpy188III TCNNGA 2 cut(s) 680, 720
Hpy8I GTNNAC 2 cut(s) 769, 962
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 107, 292, 346, 574
HpyCH4III ACNGT 2 cut(s) 775, 848
HpyCH4IV ACGT 2 cut(s) 548, 894
HpyCH4V TGCA 2 cut(s) 497, 890
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 369, 429, 467, 566, 590, 862
HpyF3I CTNAG 5 cut(s) 55, 471, 570, 585, 744
HpySE526I ACGT 2 cut(s) 548, 894
Hsp92I GRCGYC 1 cut(s) 548
Hsp92II CATG 5 cut(s) 110, 206, 410, 688, 974
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 1 cut(s) 949
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 3 cut(s) 46, 356, 852
MaeII ACGT 2 cut(s) 548, 894
MaeIII GTNAC 1 cut(s) 973
MalI GATC 1 cut(s) 951
MboI GATC 1 cut(s) 949
MboII GAAGA 6 cut(s) 244, 262, 283, 419, 427, 826
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 3 cut(s) 133, 314, 1006
MluCI AATT 4 cut(s) 396, 555, 837, 924
MlyI GAGTC 3 cut(s) 471, 755, 926
MmeI TCCRAC 2 cut(s) 524, 783
MnlI CCTC 8 cut(s) 218, 299, 356, 359, 531, 580, 631, 966
MseI TTAA 4 cut(s) 554, 618, 768, 923
MslI CAYNNNNRTG 2 cut(s) 405, 528
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 1 cut(s) 503
Mva1269I GAATGC 2 cut(s) 827, 880
MvaI CCWGG 1 cut(s) 503
MvnI CGCG 1 cut(s) 936
MwoI GCNNNNNNNGC 7 cut(s) 56, 369, 429, 467, 566, 590, 862
NdeII GATC 1 cut(s) 949
NlaIII CATG 5 cut(s) 110, 206, 410, 688, 974
NlaIV GGNNCC 1 cut(s) 757
NspI RCATGY 1 cut(s) 688
NspV TTCGAA 1 cut(s) 674
OliI CACNNNNGTG 1 cut(s) 528
PciI ACATGT 1 cut(s) 684
PciSI GCTCTTC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 1 cut(s) 891
PctI GAATGC 2 cut(s) 827, 880
PfeI GAWTC 4 cut(s) 377, 676, 712, 740
PkrI GCNGC 4 cut(s) 61, 371, 633, 867
PleI GAGTC 3 cut(s) 471, 755, 925
PpsI GAGTC 3 cut(s) 471, 755, 925
PscI ACATGT 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 757
PsuI RGATCY 1 cut(s) 949
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
RseI CAYNNNNRTG 2 cut(s) 405, 528
SacI GAGCTC 1 cut(s) 314
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 4 cut(s) 554, 618, 768, 923
SatI GCNGC 4 cut(s) 60, 370, 632, 866
Sau3AI GATC 1 cut(s) 949
SchI GAGTC 3 cut(s) 471, 755, 926
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 3 cut(s) 133, 314, 1006
SfuI TTCGAA 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 405, 528
SmlI CTYRAG 4 cut(s) 29, 350, 479, 1005
SmoI CTYRAG 4 cut(s) 29, 350, 479, 1005
Sse9I AATT 4 cut(s) 396, 555, 837, 924
SsiI CCGC 5 cut(s) 372, 560, 598, 631, 934
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 869
TaaI ACNGT 2 cut(s) 775, 848
TaiI ACGT 2 cut(s) 551, 897
TaqI TCGA 3 cut(s) 674, 729, 831
TasI AATT 4 cut(s) 396, 555, 837, 924
TatI WGTACW 1 cut(s) 775
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 4 cut(s) 377, 676, 712, 740
Tru1I TTAA 4 cut(s) 554, 618, 768, 923
Tru9I TTAA 4 cut(s) 554, 618, 768, 923
TscAI CASTG 4 cut(s) 661, 778, 853, 991
TseI GCWGC 3 cut(s) 59, 369, 865
TspDTI ATGAA 3 cut(s) 17, 191, 528
TspGWI ACGGA 2 cut(s) 182, 754
TspRI CASTG 4 cut(s) 661, 778, 853, 991
XapI RAATTY 2 cut(s) 396, 837
XceI RCATGY 1 cut(s) 688
ZraI GACGTC 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.