MD05G1093400.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014644
Physical Location & Seq
Forward (+)
19801158 .. 19803050
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1093400.v1.1.491

Sequence Viewer

Length: 1893 bp
ATGCTTCTTCCACACTTGAAGCAATTTCCATTTCCTCAAAAGCTCGGAACTTGCTTCTGCTCATCATCTCACTCTGCTCTTCATCTTCTCCACACACTCTCACCCAATCCCTCCGCCGACTTAGCTGCTTCCCTACAGGGCCGTATTTCACACCCTCGTCTCCTTCAAATCCACGCTCATGTCTTTCAGCTCGGCGCTCACCAGGACAACCTGATCGCCACTCGCCTCATCGGCCATTACCCGTCTCACCTCGCTCTCCGAGTCTTTCGTCAGCTCCGAAAACCCAACATTTTCTCTTTCAATGCAATCATCAGGGTCTTGGCTGAAGAGGGTCTCTTCTCCCATGCATTTTCACTCTTCAAATGCTTAAAACAGATCTCTCTTTTGCCTAATGATTTCACCTTCTCGTTCCTTCTCAAGGCCTCTTTTCGCACCCAAAACCCTCGTTATGTCAAACAGATTCAAACCCATGCTACGAAAATGGGGTTTCTTTGCAATGCATTTGTTTGCAATAGCCTGCTTGCCGTGTATGCTCGCGGACTTAAAGATTTGGCTTCTGCACGTCTGGTGTTTGATGAAATGCCTGAGACGGGTGATGTTTACTGTTGGACATCGTTGATTGCGGGTTATGCTCAGTCAGGCCAGAGTGAGGAAGTGTTGCGGCTTTTCTTAATGATGGTTAATGAAAATTTGCGGCCGGAAGATGATACAATGGTTAGCGTCTTGTCAGCGTGTTCGAATCTTGAGATGGTTGCAGTTGAGAAATGGGTTGAGATCCTGTCCGACGTTATCGATAATGTTGACACTAAGAATTCTGGTTGCGACTCTGTCAACACTGTCCTTGTATATCTGTATGGGAAATGGGGAAAGGTTAAGAAAAGTAGGGAAAGATTTGATGAAATTGGTGATAATGGAAAGCAAAGCGTGCTTGCTTGGAATGCCATGATAGGTGCATATGTTCAGAATGGTTGTCCTCTGGAGTCTCTGAGTCTTTTCCGCTTAATGGTAGAAAATCCCAGTTATAGGCCTAACCATGTTACAATGGTTAACGTGCTTTCAGCTTGCGCGCAAATTGGCGATTTAGACCTTGGTTCATGGGTTCACCAATACCTGAACTCTAAAGGAAGCAAGGGTGTAATTCGGTCAAACAGAATTCTAGCCACAGCATTGATCGACATGTATTCAAAATGCGGGAGTTTGCAGAGGGCAAAAGAAGTTTTTGATCAGATGCTCACAAAAGATATTGTTTCATTCAATGCCATGATCATGGGTCTTGCGGTTAACAGTGAAGGAGAGGAGGCTTTGAGGCTATTCCCTAAAATCCAAGAGTTTGGTTTGCAACCCAATGCGGGTACATTCCTCGGTGCCTTATGTGCATGCAGCCACTCTGGTTTATCGGAGAAAGGACGTCAAATATTTAAAGATATGACCTCCAGATTTTCTGTTTATCCGAAATTAGAACATTATGCTTGCTACATTGATCTCCTGGCAAGAGTAGGCCTAGTTGAAGAAGCTTTGGATGTTGTAAATTCCATGCCCTTTGAGCCTAATAGTTTTGTGTGGGGTGCTCTGCTCGGCGGCTGCCTACTCCACTCTAGAGTAGATTTGGCTCAATATGTTTCCAATAGACTGGCTCAAGTGGATCCTGAGAATTCTGGAGGCTTTGTGATGCTAGCTAATACATTGGCATCTGATCATCGATGGGGAGATGTCTCTGGGTTGCGGCGGTTTATGAGGGAGAAGGGGGTGGCCAAGCAGCCCGGCTGTAGTTGGATCAGCATCAATGGTGTTGTGCAAGAATTTGTTGTCGGGTGCCCTTCGCATCCTCAAGTTGAGATCATATATAATACTCTAGATGGATTGGTGAAGCAAATGAAGATAGCAAGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

631

Amino Acids

70.07

Weight (kDa)

8.06

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 95 - 141 3.7e-08 PPR repeat family
PPR_2 PF13041 199 - 246 4.3e-07 PPR repeat family
PPR PF01535 202 - 230 3.9e-06 PPR repeat
PPR PF01535 311 - 338 2.6e-06 PPR repeat
PPR_2 PF13041 413 - 460 3.9e-06 PPR repeat family
E_motif PF20431 531 - 592 5.1e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25550
malus_domestica MD05G1093400.v1.1 MD10G1100300.v1.1
prunus_persica Prupe.8G138100_v2.0.a1
pyrus_communis pycom05g09250 pycom10g08630
rosa_chinensis RchiOBHm_Chr2g0123701
rosa_laevigata RLG00000018770
rosa_multiflora Rmu_sc0004915.1_g000001 Rmu_sc0006911.1_g000001
rosa_roxburghii Rroxscaffold_2G00120410
rosa_rugosa Rorug02G0247400
rosa_samantha Rh2AG306400 Rh2BG314800 Rh2CG292800 Rh2DG330100
rosa_wichuraiana Rw2G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1411
AccB1I GGYRCC 2 cut(s) 1364, 1812
AccII CGCG 2 cut(s) 537, 1067
AclWI GGATC 4 cut(s) 769, 1637, 1650, 1781
AcoI YGGCCR 3 cut(s) 232, 695, 1749
AcsI RAATTY 6 cut(s) 688, 811, 1152, 1528, 1651, 1799
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 1408
AfaI GTAC 1 cut(s) 1354
AfiI CCNNNNNNNGG 6 cut(s) 418, 590, 649, 1003, 1023, 1349
AflIII ACRYGT 1 cut(s) 1176
AgsI TTSAA 8 cut(s) 19, 167, 301, 361, 464, 1185, 1255, 1508
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 2 cut(s) 201, 1485
AluBI AGCT 7 cut(s) 43, 125, 190, 274, 1061, 1514, 1676
AluI AGCT 7 cut(s) 43, 125, 190, 274, 1061, 1514, 1676
Alw21I GWGCWC 1 cut(s) 1570
Alw26I GTCTC 6 cut(s) 164, 249, 338, 581, 987, 1717
AlwI GGATC 4 cut(s) 769, 1637, 1650, 1781
AoxI GGCC 8 cut(s) 139, 232, 420, 640, 695, 1025, 1498, 1749
ApeKI GCWGC 4 cut(s) 125, 1380, 1581, 1756
ApoI RAATTY 6 cut(s) 688, 811, 1152, 1528, 1651, 1799
AspLEI GCGC 3 cut(s) 197, 1067, 1069
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 1761
AsuHPI GGTGA 8 cut(s) 93, 191, 239, 391, 605, 917, 1094, 1876
AsuII TTCGAA 1 cut(s) 737
AsuNHI GCTAGC 1 cut(s) 1672
BaeGI GKGCMC 1 cut(s) 1817
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BalI TGGCCA 1 cut(s) 1751
BamHI GGATCC 1 cut(s) 1642
BanI GGYRCC 2 cut(s) 1364, 1812
Bbv12I GWGCWC 1 cut(s) 1570
BbvI GCAGC 4 cut(s) 112, 1392, 1568, 1768
BccI CCATC 4 cut(s) 670, 742, 1695, 1850
BceAI ACGGC 2 cut(s) 126, 509
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 2 cut(s) 203, 1487
BclI TGATCA 3 cut(s) 1222, 1263, 1693
BcnI CCSGG 1 cut(s) 1761
BcoDI GTCTC 6 cut(s) 164, 249, 338, 581, 987, 1717
BfaI CTAG 5 cut(s) 1157, 1502, 1596, 1673, 1853
BfmI CTRYAG 2 cut(s) 134, 1765
BfoI RGCGCY 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 231
BglII AGATCT 1 cut(s) 375
BisI GCNGC 8 cut(s) 126, 662, 695, 1381, 1579, 1582, 1724, 1757
BlsI GCNGC 8 cut(s) 127, 663, 696, 1382, 1580, 1583, 1725, 1758
Bme1390I CCNGG 3 cut(s) 203, 1487, 1761
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 3 cut(s) 1366, 1644, 1814
BmrFI CCNGG 3 cut(s) 203, 1487, 1761
BmrI ACTGGG 1 cut(s) 1011
BmsI GCATC 5 cut(s) 1218, 1659, 1697, 1788, 1831
BmtI GCTAGC 1 cut(s) 1676
BmuI ACTGGG 1 cut(s) 1011
BpmI CTGGAG 3 cut(s) 998, 1417, 1677
Bpu14I TTCGAA 1 cut(s) 737
BpuEI CTTGAG 4 cut(s) 401, 764, 1620, 1812
BpuMI CCSGG 1 cut(s) 1761
Bsa29I ATCGAT 2 cut(s) 792, 1699
BsaBI GATNNNNATC 1 cut(s) 1778
BsaHI GRCGYC 1 cut(s) 1408
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 1087, 1360
BsaXI ACNNNNNCTCC 2 cut(s) 1650, 1680
Bsc4I CCNNNNNNNGG 6 cut(s) 418, 590, 649, 1003, 1023, 1349
Bse1I ACTGG 2 cut(s) 1017, 1635
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 1 cut(s) 1778
BseBI CCWGG 2 cut(s) 203, 1487
BseCI ATCGAT 2 cut(s) 792, 1699
BseDI CCNNGG 2 cut(s) 1087, 1360
BseGI GGATG 2 cut(s) 1525, 1822
BseJI GATNNNNATC 1 cut(s) 1778
BseLI CCNNNNNNNGG 6 cut(s) 418, 590, 649, 1003, 1023, 1349
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 4 cut(s) 576, 647, 977, 1638
BseNI ACTGG 2 cut(s) 1017, 1635
BsePI GCGCGC 1 cut(s) 1065
BseRI GAGGAG 1 cut(s) 1310
BseSI GKGCMC 1 cut(s) 1817
BseX3I CGGCCG 1 cut(s) 695
BseXI GCAGC 4 cut(s) 112, 1392, 1568, 1768
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 2 cut(s) 537, 1067
Bsh1285I CGRYCG 1 cut(s) 698
BshFI GGCC 8 cut(s) 141, 234, 422, 642, 697, 1027, 1500, 1751
BshNI GGYRCC 2 cut(s) 1364, 1812
BshVI ATCGAT 2 cut(s) 792, 1699
BsiEI CGRYCG 1 cut(s) 698
BsiHKAI GWGCWC 1 cut(s) 1570
BsiSI CCGG 2 cut(s) 698, 1761
BslI CCNNNNNNNGG 6 cut(s) 418, 590, 649, 1003, 1023, 1349
BsmAI GTCTC 6 cut(s) 164, 249, 338, 581, 987, 1717
BsmBI CGTCTC 3 cut(s) 164, 249, 581
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 8 cut(s) 141, 234, 422, 642, 697, 1027, 1500, 1751
Bso31I GGTCTC 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 1570, 1817
BspANI GGCC 8 cut(s) 141, 234, 422, 642, 697, 1027, 1500, 1751
BspCNI CTCAG 4 cut(s) 577, 646, 978, 1639
BspDI ATCGAT 2 cut(s) 792, 1699
BspFNI CGCG 2 cut(s) 537, 1067
BspLI GGNNCC 3 cut(s) 1366, 1644, 1814
BspOI GCTAGC 1 cut(s) 1676
BspPI GGATC 4 cut(s) 769, 1637, 1650, 1781
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 737
BspT107I GGYRCC 2 cut(s) 1364, 1812
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 2 cut(s) 1017, 1635
BssECI CCNNGG 2 cut(s) 1087, 1360
BssHII GCGCGC 1 cut(s) 1065
BssNI GRCGYC 1 cut(s) 1408
BssT1I CCWWGG 1 cut(s) 1087
Bst2UI CCWGG 2 cut(s) 203, 1487
Bst4CI ACNGT 3 cut(s) 605, 838, 1286
Bst6I CTCTTC 4 cut(s) 84, 321, 341, 362
BstACI GRCGYC 1 cut(s) 1408
BstAPI GCANNNNNTGC 1 cut(s) 925
BstBI TTCGAA 1 cut(s) 737
BstDEI CTNAG 6 cut(s) 121, 585, 633, 807, 986, 1647
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 1525, 1822
BstFNI CGCG 2 cut(s) 537, 1067
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 3 cut(s) 197, 1067, 1069
BstMAI GTCTC 6 cut(s) 164, 249, 338, 581, 987, 1717
BstMCI CGRYCG 1 cut(s) 698
BstMWI GCNNNNNNNGC 8 cut(s) 122, 231, 530, 629, 925, 938, 1373, 1543
BstNI CCWGG 2 cut(s) 203, 1487
BstNSI RCATGY 2 cut(s) 1180, 1380
BstSCI CCNGG 3 cut(s) 201, 1485, 1759
BstSFI CTRYAG 2 cut(s) 134, 1765
BstSLI GKGCMC 1 cut(s) 1817
BstUI CGCG 2 cut(s) 537, 1067
BstV1I GCAGC 4 cut(s) 112, 1392, 1568, 1768
BstX2I RGATCY 3 cut(s) 375, 774, 1642
BstXI CCANNNNNNTGG 3 cut(s) 1267, 1331, 1630
BstYI RGATCY 3 cut(s) 375, 774, 1642
BstZI CGGCCG 1 cut(s) 695
Bsu15I ATCGAT 2 cut(s) 792, 1699
BsuRI GGCC 8 cut(s) 141, 234, 422, 642, 697, 1027, 1500, 1751
BsuTUI ATCGAT 2 cut(s) 792, 1699
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 1525, 1822
BtsIMutI CAGTG 2 cut(s) 834, 1291
CfoI GCGC 3 cut(s) 197, 1067, 1069
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 2 cut(s) 792, 1699
CseI GACGC 1 cut(s) 709
Csp6I GTAC 1 cut(s) 1353
CviQI GTAC 1 cut(s) 1353
DdeI CTNAG 6 cut(s) 121, 585, 633, 807, 986, 1647
DraI TTTAAA 1 cut(s) 1420
EaeI YGGCCR 3 cut(s) 232, 695, 1749
EagI CGGCCG 1 cut(s) 695
Eam1104I CTCTTC 4 cut(s) 84, 321, 341, 362
EarI CTCTTC 4 cut(s) 84, 321, 341, 362
EciI GGCGGA 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 1087
Eco147I AGGCCT 3 cut(s) 422, 1027, 1500
Eco31I GGTCTC 1 cut(s) 338
Eco52I CGGCCG 1 cut(s) 695
Eco57I CTGAAG 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoRI GAATTC 3 cut(s) 811, 1152, 1651
EcoRII CCWGG 2 cut(s) 201, 1485
EcoT14I CCWWGG 1 cut(s) 1087
EcoT22I ATGCAT 2 cut(s) 349, 502
ErhI CCWWGG 1 cut(s) 1087
Esp3I CGTCTC 3 cut(s) 164, 249, 581
FauI CCCGC 3 cut(s) 616, 1184, 1342
FauNDI CATATG 1 cut(s) 955
FbaI TGATCA 3 cut(s) 1222, 1263, 1693
Fnu4HI GCNGC 8 cut(s) 126, 662, 695, 1381, 1579, 1582, 1724, 1757
FokI GGATG 2 cut(s) 1532, 1809
Fsp4HI GCNGC 8 cut(s) 126, 662, 695, 1381, 1579, 1582, 1724, 1757
FspBI CTAG 5 cut(s) 1157, 1502, 1596, 1673, 1853
GlaI GCGC 3 cut(s) 196, 1066, 1068
GluI GCNGC 8 cut(s) 126, 662, 695, 1381, 1579, 1582, 1724, 1757
GsuI CTGGAG 3 cut(s) 998, 1417, 1677
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 8 cut(s) 141, 234, 422, 642, 697, 1027, 1500, 1751
HapII CCGG 2 cut(s) 698, 1761
HgaI GACGC 1 cut(s) 709
HhaI GCGC 3 cut(s) 197, 1067, 1069
Hin1I GRCGYC 1 cut(s) 1408
Hin6I GCGC 3 cut(s) 195, 1065, 1067
HinP1I GCGC 3 cut(s) 195, 1065, 1067
HincII GTYRAC 4 cut(s) 802, 832, 1048, 1282
HindII GTYRAC 4 cut(s) 802, 832, 1048, 1282
HindIII AAGCTT 1 cut(s) 1512
HinfI GANTC 6 cut(s) 261, 460, 739, 824, 980, 988
HpaI GTTAAC 2 cut(s) 1048, 1282
HpaII CCGG 2 cut(s) 698, 1761
HphI GGTGA 8 cut(s) 93, 191, 239, 391, 605, 917, 1094, 1876
Hpy166II GTNNAC 6 cut(s) 601, 802, 832, 1048, 1102, 1282
Hpy188III TCNNGA 7 cut(s) 743, 977, 1434, 1596, 1646, 1656, 1853
Hpy8I GTNNAC 6 cut(s) 601, 802, 832, 1048, 1102, 1282
Hpy99I CGWCG 1 cut(s) 788
HpyAV CCTTC 6 cut(s) 173, 412, 422, 1283, 1735, 1827
HpyCH4III ACNGT 3 cut(s) 605, 838, 1286
HpyCH4IV ACGT 4 cut(s) 562, 786, 1050, 1408
HpyF10VI GCNNNNNNNGC 8 cut(s) 122, 231, 530, 629, 925, 938, 1373, 1543
HpyF3I CTNAG 6 cut(s) 121, 585, 633, 807, 986, 1647
HpySE526I ACGT 4 cut(s) 562, 786, 1050, 1408
Hsp92I GRCGYC 1 cut(s) 1408
HspAI GCGC 3 cut(s) 195, 1065, 1067
Ksp22I TGATCA 3 cut(s) 1222, 1263, 1693
KspAI GTTAAC 2 cut(s) 1048, 1282
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 4 cut(s) 112, 1392, 1568, 1768
LweI GCATC 5 cut(s) 1218, 1659, 1697, 1788, 1831
MaeI CTAG 5 cut(s) 1157, 1502, 1596, 1673, 1853
MaeII ACGT 4 cut(s) 562, 786, 1050, 1408
MaeIII GTNAC 1 cut(s) 1036
MboII GAAGA 8 cut(s) 71, 77, 328, 338, 349, 713, 1520, 1888
MflI RGATCY 3 cut(s) 375, 774, 1642
MhlI GDGCHC 2 cut(s) 1570, 1817
MlsI TGGCCA 1 cut(s) 1751
MluNI TGGCCA 1 cut(s) 1751
MlyI GAGTC 4 cut(s) 270, 818, 989, 997
MmeI TCCRAC 3 cut(s) 587, 807, 1751
Mox20I TGGCCA 1 cut(s) 1751
Mph1103I ATGCAT 2 cut(s) 349, 502
MscI TGGCCA 1 cut(s) 1751
MseI TTAA 9 cut(s) 368, 543, 671, 681, 873, 1001, 1047, 1281, 1419
MslI CAYNNNNRTG 2 cut(s) 177, 1265
Msp20I TGGCCA 1 cut(s) 1751
MspI CCGG 2 cut(s) 698, 1761
MspR9I CCNGG 3 cut(s) 203, 1487, 1761
Mva1269I GAATGC 1 cut(s) 943
MvaI CCWGG 2 cut(s) 203, 1487
MvnI CGCG 2 cut(s) 537, 1067
MwoI GCNNNNNNNGC 8 cut(s) 122, 231, 530, 629, 925, 938, 1373, 1543
NciI CCSGG 1 cut(s) 1761
NdeI CATATG 1 cut(s) 955
NheI GCTAGC 1 cut(s) 1672
NlaIV GGNNCC 3 cut(s) 1366, 1644, 1814
NmeAIII GCCGAG 2 cut(s) 171, 1554
NsiI ATGCAT 2 cut(s) 349, 502
NspI RCATGY 2 cut(s) 1180, 1380
NspV TTCGAA 1 cut(s) 737
PaeI GCATGC 1 cut(s) 1380
PauI GCGCGC 1 cut(s) 1065
PceI AGGCCT 3 cut(s) 422, 1027, 1500
PciI ACATGT 1 cut(s) 1176
PciSI GCTCTTC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PctI GAATGC 1 cut(s) 943
PfeI GAWTC 2 cut(s) 460, 739
PflFI GACNNNGTC 1 cut(s) 827
PkrI GCNGC 8 cut(s) 127, 663, 696, 1382, 1580, 1583, 1725, 1758
PleI GAGTC 4 cut(s) 269, 818, 988, 996
PpsI GAGTC 4 cut(s) 269, 818, 988, 996
PscI ACATGT 1 cut(s) 1176
Psp6I CCWGG 2 cut(s) 201, 1485
PspGI CCWGG 2 cut(s) 201, 1485
PspN4I GGNNCC 3 cut(s) 1366, 1644, 1814
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 3 cut(s) 375, 774, 1642
PsyI GACNNNGTC 1 cut(s) 827
PteI GCGCGC 1 cut(s) 1065
RsaI GTAC 1 cut(s) 1354
RsaNI GTAC 1 cut(s) 1353
RseI CAYNNNNRTG 2 cut(s) 177, 1265
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 9 cut(s) 368, 543, 671, 681, 873, 1001, 1047, 1281, 1419
SatI GCNGC 8 cut(s) 126, 662, 695, 1381, 1579, 1582, 1724, 1757
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 4 cut(s) 270, 818, 989, 997
ScrFI CCNGG 3 cut(s) 203, 1487, 1761
SduI GDGCHC 2 cut(s) 1570, 1817
SfaNI GCATC 5 cut(s) 1218, 1659, 1697, 1788, 1831
SfcI CTRYAG 2 cut(s) 134, 1765
SfuI TTCGAA 1 cut(s) 737
SmiMI CAYNNNNRTG 2 cut(s) 177, 1265
SmlI CTYRAG 4 cut(s) 416, 743, 1635, 1827
SmoI CTYRAG 4 cut(s) 416, 743, 1635, 1827
SphI GCATGC 1 cut(s) 1380
SseBI AGGCCT 3 cut(s) 422, 1027, 1500
SspI AATATT 1 cut(s) 1416
SspMI CTAG 5 cut(s) 1157, 1502, 1596, 1673, 1853
StuI AGGCCT 3 cut(s) 422, 1027, 1500
StyD4I CCNGG 3 cut(s) 201, 1485, 1759
StyI CCWWGG 1 cut(s) 1087
TaaI ACNGT 3 cut(s) 605, 838, 1286
TaiI ACGT 4 cut(s) 565, 789, 1053, 1411
TaqI TCGA 4 cut(s) 737, 792, 1173, 1699
TaqII GACCGA 1 cut(s) 1131
TauI GCSGC 4 cut(s) 664, 697, 1581, 1726
TfiI GAWTC 2 cut(s) 460, 739
Tru1I TTAA 9 cut(s) 368, 543, 671, 681, 873, 1001, 1047, 1281, 1419
Tru9I TTAA 9 cut(s) 368, 543, 671, 681, 873, 1001, 1047, 1281, 1419
TscAI CASTG 2 cut(s) 841, 1291
TseI GCWGC 4 cut(s) 125, 1380, 1581, 1756
TspDTI ATGAA 7 cut(s) 71, 591, 699, 912, 1083, 1239, 1889
TspRI CASTG 2 cut(s) 841, 1291
Tth111I GACNNNGTC 1 cut(s) 827
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 6 cut(s) 688, 811, 1152, 1528, 1651, 1799
XbaI TCTAGA 2 cut(s) 1595, 1852
XceI RCATGY 2 cut(s) 1180, 1380
XspI CTAG 5 cut(s) 1157, 1502, 1596, 1673, 1853
ZraI GACGTC 1 cut(s) 1409
Zsp2I ATGCAT 2 cut(s) 349, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.