MD10G1100300.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014644
Physical Location & Seq
Reverse (-)
16243783 .. 16244873
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1100300.v1.1.491

Sequence Viewer

Length: 735 bp
ATGCCTCTGAAGCGTAGTGTTTACTGTTGGACATCGTTAATTGCTGGTTATGCTCATTCAGGTCAGAGTGAGGAAGTTTTGCAGCTTATCTTAATGATGGTTAATGAAAATTTGCGGCTGGAAGATGATACAATGGTCAGCGTCTTGTCAGCGTGTTCAAATCTTGAGATGGTTGCACTTGAGAAATGGATTGAGATCCTATCAGATATTGTCGATACTAAGAATTTTGGTTGTGACTCTGTCGACACTGTCCTTTTATATTTGTACGGGAAATGGGGAAAGGTTGAGAAGAGTAGGGAAATATTTGATGAAATTGGTGATAATGGAAAGCAAAGCGTGCTTGCTTGGAATGCCATGATAGGCTTTGAGGCTATTCTCGGTGCCTTATGTGCATGGGGTCACTCTGGTTTATCGGAGGAAGGACGTCAAATATTTAGTGGTATAACCTTAAGGTTTTCTGTTTATCCGAAATTAGAACATTATGCTTGCTACATTGATATCCTTGCAAGGGTAGGCCTACTCGAAGAAGCTTTAGAGGTTGTAAAATCCATGCCCCTTGAGCCTAATAATTTTGTGTGGGGTGCTTTGCTCGGTGGTTGCCTGCTCCACTCTAGAGTTGACGTGGCTCAATATGTTTCCAATAGACTGGCTCAAGTGGATACTGAGAATTCCAGAGGCTTTGTGATGCTAGCTAATACATTGGCATTCGATCATCGATGGGGCGATGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

245

Amino Acids

27.31

Weight (kDa)

4.77

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25550
malus_domestica MD05G1093400.v1.1 MD10G1100300.v1.1
prunus_persica Prupe.8G138100_v2.0.a1
pyrus_communis pycom05g09250 pycom10g08630
rosa_chinensis RchiOBHm_Chr2g0123701
rosa_laevigata RLG00000018770
rosa_multiflora Rmu_sc0004915.1_g000001 Rmu_sc0006911.1_g000001
rosa_roxburghii Rroxscaffold_2G00120410
rosa_rugosa Rorug02G0247400
rosa_samantha Rh2AG306400 Rh2BG314800 Rh2CG292800 Rh2DG330100
rosa_wichuraiana Rw2G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 190
AcsI RAATTY 3 cut(s) 109, 223, 667
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 424
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 508
AflII CTTAAG 1 cut(s) 448
AgsI TTSAA 1 cut(s) 159
AjiI CACGTC 1 cut(s) 622
AluBI AGCT 3 cut(s) 85, 530, 692
AluI AGCT 3 cut(s) 85, 530, 692
AlwI GGATC 1 cut(s) 190
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 3 cut(s) 109, 223, 667
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 688
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BanI GGYRCC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 91, 163, 711
BciVI GTATCC 1 cut(s) 652
BfaI CTAG 2 cut(s) 612, 689
BfrI CTTAAG 1 cut(s) 448
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 2 cut(s) 83, 116
BlsI GCNGC 2 cut(s) 84, 117
BmgBI CACGTC 1 cut(s) 622
BmiI GGNNCC 1 cut(s) 382
BmsI GCATC 1 cut(s) 675
BmtI GCTAGC 1 cut(s) 692
BpuEI CTTGAG 4 cut(s) 185, 200, 578, 636
Bsa29I ATCGAT 1 cut(s) 715
BsaBI GATNNNNATC 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse1I ACTGG 1 cut(s) 651
Bse8I GATNNNNATC 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 715
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 1 cut(s) 651
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 516
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 715
BslI CCNNNNNNNGG 1 cut(s) 508
BsmI GAATGC 2 cut(s) 355, 704
BsnI GGCC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 195, 709
BspACI CCGC 1 cut(s) 115
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 1 cut(s) 655
BspDI ATCGAT 1 cut(s) 715
BspLI GGNNCC 1 cut(s) 382
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 380
BspTI CTTAAG 1 cut(s) 448
BsrI ACTGG 1 cut(s) 651
BssMI GATC 2 cut(s) 195, 709
BssNI GRCGYC 1 cut(s) 424
Bst4CI ACNGT 2 cut(s) 26, 250
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 424
BstAFI CTTAAG 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 337
BstC8I GCNNGC 5 cut(s) 338, 342, 487, 602, 690
BstDEI CTNAG 2 cut(s) 219, 663
BstKTI GATC 2 cut(s) 198, 712
BstMBI GATC 2 cut(s) 195, 709
BstMWI GCNNNNNNNGC 6 cut(s) 10, 50, 337, 350, 389, 559
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 646
BstYI RGATCY 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 715
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 1 cut(s) 516
BsuTUI ATCGAT 1 cut(s) 715
BtrI CACGTC 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 5 cut(s) 338, 342, 487, 602, 690
ClaI ATCGAT 1 cut(s) 715
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 355, 393, 550
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 219, 663
DpnI GATC 2 cut(s) 197, 711
DpnII GATC 2 cut(s) 195, 709
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 516
Eco32I GATATC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 667
EcoRV GATATC 1 cut(s) 499
FaeI CATG 3 cut(s) 358, 396, 553
FaiI YATR 9 cut(s) 51, 259, 356, 388, 394, 443, 483, 551, 633
FatI CATG 3 cut(s) 354, 392, 549
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 83, 116
Fsp4HI GCNGC 2 cut(s) 83, 116
FspBI CTAG 2 cut(s) 612, 689
GluI GCNGC 2 cut(s) 83, 116
HaeIII GGCC 1 cut(s) 516
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 424
Hin1II CATG 3 cut(s) 358, 396, 553
HincII GTYRAC 2 cut(s) 244, 619
HindII GTYRAC 2 cut(s) 244, 619
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 3 cut(s) 22, 244, 619
Hpy188I TCNGA 5 cut(s) 9, 66, 205, 415, 468
Hpy188III TCNNGA 3 cut(s) 164, 612, 672
Hpy8I GTNNAC 3 cut(s) 22, 244, 619
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 2 cut(s) 26, 250
HpyCH4IV ACGT 2 cut(s) 424, 621
HpyCH4V TGCA 4 cut(s) 82, 176, 392, 506
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 50, 337, 350, 389, 559
HpyF3I CTNAG 2 cut(s) 219, 663
HpySE526I ACGT 2 cut(s) 424, 621
Hsp92I GRCGYC 1 cut(s) 424
Hsp92II CATG 3 cut(s) 358, 396, 553
Kzo9I GATC 2 cut(s) 195, 709
LmnI GCTCC 1 cut(s) 609
LpnPI CCDG 7 cut(s) 30, 45, 104, 390, 614, 632, 685
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 675
MaeI CTAG 2 cut(s) 612, 689
MaeII ACGT 2 cut(s) 424, 621
MaeIII GTNAC 2 cut(s) 233, 398
MalI GATC 2 cut(s) 197, 711
MboI GATC 2 cut(s) 195, 709
MboII GAAGA 3 cut(s) 134, 301, 536
MflI RGATCY 1 cut(s) 195
MluCI AATT 7 cut(s) 39, 109, 223, 312, 470, 568, 667
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 6 cut(s) 15, 64, 361, 409, 529, 668
MseI TTAA 4 cut(s) 38, 92, 102, 449
MspCI CTTAAG 1 cut(s) 448
Mva1269I GAATGC 2 cut(s) 355, 704
MwoI GCNNNNNNNGC 6 cut(s) 10, 50, 337, 350, 389, 559
NdeII GATC 2 cut(s) 195, 709
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 3 cut(s) 358, 396, 553
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 233, 398
PceI AGGCCT 1 cut(s) 516
PctI GAATGC 2 cut(s) 355, 704
PflFI GACNNNGTC 2 cut(s) 239, 248
PkrI GCNGC 2 cut(s) 84, 117
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 195
PsyI GACNNNGTC 2 cut(s) 239, 248
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 4 cut(s) 38, 92, 102, 449
SatI GCNGC 2 cut(s) 83, 116
Sau3AI GATC 2 cut(s) 195, 709
SchI GAGTC 1 cut(s) 230
SfaNI GCATC 1 cut(s) 675
SmlI CTYRAG 5 cut(s) 164, 179, 448, 557, 651
SmoI CTYRAG 5 cut(s) 164, 179, 448, 557, 651
Sse9I AATT 7 cut(s) 39, 109, 223, 312, 470, 568, 667
SseBI AGGCCT 1 cut(s) 516
SsiI CCGC 1 cut(s) 115
SspI AATATT 2 cut(s) 303, 432
SspMI CTAG 2 cut(s) 612, 689
StuI AGGCCT 1 cut(s) 516
TaaI ACNGT 2 cut(s) 26, 250
TaiI ACGT 2 cut(s) 427, 624
TaqI TCGA 5 cut(s) 213, 243, 522, 708, 715
TasI AATT 7 cut(s) 39, 109, 223, 312, 470, 568, 667
TauI GCSGC 1 cut(s) 118
Tru1I TTAA 4 cut(s) 38, 92, 102, 449
Tru9I TTAA 4 cut(s) 38, 92, 102, 449
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 2 cut(s) 233, 398
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 2 cut(s) 233, 398
TspDTI ATGAA 2 cut(s) 120, 324
TspRI CASTG 1 cut(s) 253
Tth111I GACNNNGTC 2 cut(s) 239, 248
Vha464I CTTAAG 1 cut(s) 448
XapI RAATTY 3 cut(s) 109, 223, 667
XbaI TCTAGA 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 2 cut(s) 612, 689
ZraI GACGTC 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.