FvH4_1g26670

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014646
Physical Location & Seq
Reverse (-)
18515807 .. 18519692
3886 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26670.t1

Sequence Viewer

Length: 642 bp
ATGAGTACTACTAGTGAACAATCGACGAGTTCATATTCTCCTTCCCGTACTACTACTTCTTCAATGGAACAGGTTTCAAAAGCAATGGTGAAGGAGAGAGTGCAGCAAAAACCAGAATGGATTGAGGGATTCTTAAGAGCAAAATTCTCTGTTGCCTGTGCAACCCATCCTTATATCGCGAACCCCTTAAATAGGTACTGCATAACCTGTAGAATCCCAGGATGCCAGTTCTGTATCAGTCCTGGCAATCGGCATAGCGACCACGAAACGTTCCAAGTCTACAGGCATTCCAACCGTGATGCAGTTTTACTCAACGAAATGCAAAAACACTTCGACTGTAGTGGTATTCTTCCCTACAAGCGTGACCGATCGCTGGTCATAGCACTGAAGCCTCTCCCGCATTTAGGTGGATTAAGCAAGTTTATGTGCAAGACTTGTGGGAGACGAATAAGTTACCCGTACTCATACTGCTGCCTCTATTGCAAGGTGGAAGTAATGGCGAGCAGAGTCTCATCATCAGCTCCTCCACTTCTTGGCGACCAGAATAGTCCCAACAATAGGGAAAACAAGAAGAGGGTTGCCGAACCGGACAGCTCACTTAACAGAAGAAAGGGAAAAGCTTTCCGAGCTCCATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

214

Amino Acids

24.17

Weight (kDa)

9.57

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 95 - 163 4.2e-12 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 533
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 179
AciI CCGC 1 cut(s) 398
AclI AACGTT 1 cut(s) 269
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 4 cut(s) 7, 49, 197, 461
AfiI CCNNNNNNNGG 5 cut(s) 192, 373, 404, 533, 558
AflII CTTAAG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 63, 78
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 217, 241
AluBI AGCT 4 cut(s) 521, 594, 620, 629
AluI AGCT 4 cut(s) 521, 594, 620, 629
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 2 cut(s) 436, 514
ApeKI GCWGC 2 cut(s) 103, 471
ApoI RAATTY 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 631
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 115, 458
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 219, 243
BcoDI GTCTC 2 cut(s) 436, 514
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 3 cut(s) 208, 280, 337
BfrI CTTAAG 1 cut(s) 133
BisI GCNGC 2 cut(s) 104, 472
BlsI GCNGC 2 cut(s) 105, 473
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 219, 243
BmrFI CCNGG 2 cut(s) 219, 243
BmsI GCATC 2 cut(s) 212, 289
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 586
Bsc4I CCNNNNNNNGG 5 cut(s) 192, 373, 404, 533, 558
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 2 cut(s) 219, 243
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 166, 227
BseLI CCNNNNNNNGG 5 cut(s) 192, 373, 404, 533, 558
BseMI GCAATG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 2 cut(s) 115, 458
BsgI GTGCAG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 371
BsiEI CGRYCG 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 587
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 5 cut(s) 192, 373, 404, 533, 558
BsmAI GTCTC 2 cut(s) 436, 514
BsmBI CGTCTC 1 cut(s) 436
BsmFI GGGAC 1 cut(s) 534
BsmI GAATGC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 1 cut(s) 368
Bsp68I TCGCGA 1 cut(s) 179
BspACI CCGC 1 cut(s) 398
BspFNI CGCG 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 219, 243
Bst4CI ACNGT 2 cut(s) 296, 338
Bst6I CTCTTC 1 cut(s) 566
BstAFI CTTAAG 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 166, 227
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 2 cut(s) 436, 514
BstMBI GATC 1 cut(s) 368
BstMCI CGRYCG 1 cut(s) 371
BstMWI GCNNNNNNNGC 3 cut(s) 397, 480, 626
BstNI CCWGG 2 cut(s) 219, 243
BstSCI CCNGG 2 cut(s) 217, 241
BstSFI CTRYAG 3 cut(s) 208, 280, 337
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 115, 458
BtsCI GGATG 2 cut(s) 166, 227
BtsIMutI CAGTG 1 cut(s) 383
BtuMI TCGCGA 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 502
Csp6I GTAC 4 cut(s) 6, 48, 196, 460
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviJI RGCY 5 cut(s) 391, 521, 594, 620, 629
CviKI_1 RGCY 5 cut(s) 391, 521, 594, 620, 629
CviQI GTAC 4 cut(s) 6, 48, 196, 460
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Ecl136II GAGCTC 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 631
Eco53kI GAGCTC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 217, 241
EcoT38I GRGCYC 1 cut(s) 631
Esp3I CGTCTC 1 cut(s) 436
FaiI YATR 7 cut(s) 34, 174, 203, 255, 380, 425, 466
FaqI GGGAC 1 cut(s) 534
FauI CCCGC 1 cut(s) 405
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 104, 472
FokI GGATG 2 cut(s) 153, 234
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 2 cut(s) 104, 472
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 104, 472
HapII CCGG 1 cut(s) 587
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 3 cut(s) 129, 213, 507
HpaII CCGG 1 cut(s) 587
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 17, 280
Hpy188I TCNGA 2 cut(s) 626, 641
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 2 cut(s) 17, 280
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 51, 85
HpyCH4III ACNGT 2 cut(s) 296, 338
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 7 cut(s) 103, 161, 201, 302, 322, 429, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 397, 480, 626
HpySE526I ACGT 1 cut(s) 269
Kzo9I GATC 1 cut(s) 368
LmnI GCTCC 2 cut(s) 526, 634
Lsp1109I GCAGC 2 cut(s) 115, 458
LweI GCATC 2 cut(s) 212, 289
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 362, 452
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 4 cut(s) 51, 341, 583, 618
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 516
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 5 cut(s) 118, 402, 485, 534, 567
MseI TTAA 4 cut(s) 134, 188, 413, 600
MslI CAYNNNNRTG 1 cut(s) 405
MspCI CTTAAG 1 cut(s) 133
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 2 cut(s) 219, 243
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 2 cut(s) 219, 243
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 397, 480, 626
NdeII GATC 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 362
NruI TCGCGA 1 cut(s) 179
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 129, 213
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 2 cut(s) 105, 473
Ple19I CGATCG 1 cut(s) 371
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 631
Psp1406I AACGTT 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 217, 241
PspGI CCWGG 2 cut(s) 217, 241
PvuI CGATCG 1 cut(s) 371
RruI TCGCGA 1 cut(s) 179
RsaI GTAC 4 cut(s) 7, 49, 197, 461
RsaNI GTAC 4 cut(s) 6, 48, 196, 460
RseI CAYNNNNRTG 1 cut(s) 405
SacI GAGCTC 1 cut(s) 631
SaqAI TTAA 4 cut(s) 134, 188, 413, 600
SatI GCNGC 2 cut(s) 104, 472
Sau3AI GATC 1 cut(s) 368
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 2 cut(s) 219, 243
SduI GDGCHC 1 cut(s) 631
SfaNI GCATC 2 cut(s) 212, 289
SfcI CTRYAG 3 cut(s) 208, 280, 337
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 398
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 631
StyD4I CCNGG 2 cut(s) 217, 241
TaaI ACNGT 2 cut(s) 296, 338
TaiI ACGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 23, 333
TaqII GACCGA 1 cut(s) 381
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 129, 213
Tru1I TTAA 4 cut(s) 134, 188, 413, 600
Tru9I TTAA 4 cut(s) 134, 188, 413, 600
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 2 cut(s) 103, 471
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 390
Van91I CCANNNNNTGG 1 cut(s) 533
Vha464I CTTAAG 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 190
XapI RAATTY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.