Rorug03G0253400

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014646
Physical Location & Seq
Reverse (-)
24062734 .. 24063360
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0253400.1

Sequence Viewer

Length: 627 bp
ATGATGGTCATGCCTGAACTCACCTCTTTCTGTATGTTCTTGGATGAAGAACAAGCAACTCGATTGGAAAAAGATTGGAAGTGTGTGGAAGCGTGCTTAAAGAAGCATGGCTTTTCTTGCAAACTGATTGCTGCGGTCGAGTGTTACATGATAGTCTCCAAAACTACAAACGCTGGGGATCCAGGTATCACTGACAAGATTTGGGATTTCCTTAAACTTTTGTCAATTGATGTTGAGCCTTCTAAGGCAATAGAAGTACTGAATGGCCGTCTGCATTTTGACTTCATCCCGACGGGGTATAGATATGGTGGTGGGCTCTGTTCAAAATTTAGGATCACTGAGGAGCAATTTGCTGAAGTGGTGTGGCCACGTATTGAGCGCGGCTTAGAGGAAATTTCAACTCAACTGAAGTGCGAGTACATTATTAGTCCGAACTTTATTACTGTCTTGGGACCTGGAGAACTAGGGGAGTTCAGAAGGTTTGTGGAACAGTGTTTTTGTTTCAGACCTCGTCCGACTTGTGTCATGCGGGCTAGGATAAAAGGCAGGTTCGTGCCACCTTTTGGTCGTGAGGCTCGTGCATTTTTCTTTGGCGAGGATGTGGCAAGCGGCCTAGAGATGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

208

Amino Acids

23.83

Weight (kDa)

5.62

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 537
AccB7I CCANNNNNTGG 1 cut(s) 563
AccII CGCG 1 cut(s) 381
AciI CCGC 4 cut(s) 134, 381, 529, 609
AclWI GGATC 3 cut(s) 173, 186, 341
AcoI YGGCCR 2 cut(s) 265, 365
AcsI RAATTY 2 cut(s) 326, 393
AcuI CTGAAG 2 cut(s) 375, 428
AfaI GTAC 2 cut(s) 258, 419
AfiI CCNNNNNNNGG 2 cut(s) 563, 619
AgsI TTSAA 2 cut(s) 324, 399
AjnI CCWGG 2 cut(s) 181, 454
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 3 cut(s) 173, 186, 341
AoxI GGCC 3 cut(s) 265, 365, 610
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 326, 393
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 367
BamHI GGATCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BauI CACGAG 1 cut(s) 576
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 613
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 2 cut(s) 183, 456
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 3 cut(s) 464, 534, 614
BfuAI ACCTGC 1 cut(s) 537
BisI GCNGC 3 cut(s) 132, 382, 610
BlsI GCNGC 3 cut(s) 133, 383, 611
BmcAI AGTACT 1 cut(s) 258
Bme1390I CCNGG 2 cut(s) 183, 456
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 180, 453
BmrFI CCNGG 2 cut(s) 183, 456
BoxI GACNNNNGTC 1 cut(s) 521
BpmI CTGGAG 1 cut(s) 477
BsaAI YACGTR 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 563, 619
BseBI CCWGG 2 cut(s) 183, 456
BseGI GGATG 3 cut(s) 49, 285, 604
BseLI CCNNNNNNNGG 2 cut(s) 563, 619
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 267, 367, 612
BsiEI CGRYCG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 563, 619
BsmAI GTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 3 cut(s) 267, 367, 612
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 178, 333
BspACI CCGC 4 cut(s) 134, 381, 529, 609
BspANI GGCC 3 cut(s) 267, 367, 612
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 180, 453
BspMI ACCTGC 1 cut(s) 537
BspPI GGATC 3 cut(s) 173, 186, 341
BssMI GATC 2 cut(s) 178, 333
BssSI CACGAG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 2 cut(s) 183, 456
Bst4CI ACNGT 2 cut(s) 445, 492
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 3 cut(s) 94, 531, 607
BstDEI CTNAG 3 cut(s) 243, 339, 385
BstF5I GGATG 3 cut(s) 49, 285, 604
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 2 cut(s) 181, 336
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 178, 333
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 2 cut(s) 183, 456
BstPAI GACNNNNGTC 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 181, 454
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 3 cut(s) 267, 367, 612
BtsCI GGATG 3 cut(s) 49, 285, 604
BtsIMutI CAGTG 3 cut(s) 189, 336, 497
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 3 cut(s) 94, 531, 607
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 257, 418
CviAII CATG 4 cut(s) 10, 107, 148, 526
CviJI RGCY 9 cut(s) 111, 238, 267, 316, 367, 384, 533, 575, 612
CviKI_1 RGCY 9 cut(s) 111, 238, 267, 316, 367, 384, 533, 575, 612
CviQI GTAC 2 cut(s) 257, 418
DdeI CTNAG 3 cut(s) 243, 339, 385
DpnI GATC 2 cut(s) 180, 335
DpnII GATC 2 cut(s) 178, 333
EaeI YGGCCR 2 cut(s) 265, 365
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 375, 428
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 181, 454
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 4 cut(s) 13, 110, 151, 529
FaiI YATR 7 cut(s) 11, 35, 108, 149, 300, 306, 527
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 465
FatI CATG 4 cut(s) 9, 106, 147, 525
FauI CCCGC 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 132, 382, 610
FokI GGATG 3 cut(s) 56, 272, 611
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 3 cut(s) 132, 382, 610
FspBI CTAG 3 cut(s) 464, 534, 614
GlaI GCGC 1 cut(s) 380
GluI GCNGC 3 cut(s) 132, 382, 610
GsaI CCCAGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 3 cut(s) 267, 367, 612
HhaI GCGC 1 cut(s) 381
Hin1II CATG 4 cut(s) 13, 110, 151, 529
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HphI GGTGA 1 cut(s) 13
Hpy188I TCNGA 4 cut(s) 432, 476, 506, 516
Hpy188III TCNNGA 2 cut(s) 289, 569
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 249, 471
HpyCH4III ACNGT 2 cut(s) 445, 492
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 3 cut(s) 120, 274, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 243, 339, 385
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 4 cut(s) 13, 110, 151, 529
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 2 cut(s) 178, 333
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 7 cut(s) 27, 159, 168, 195, 441, 468, 532
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 3 cut(s) 464, 534, 614
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 180, 335
MboI GATC 2 cut(s) 178, 333
MboII GAAGA 1 cut(s) 59
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 318
MlsI TGGCCA 1 cut(s) 367
MluCI AATT 4 cut(s) 225, 326, 347, 393
MluNI TGGCCA 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 539
MnlI CCTC 6 cut(s) 34, 334, 382, 519, 565, 589
Mox20I TGGCCA 1 cut(s) 367
MscI TGGCCA 1 cut(s) 367
MseI TTAA 2 cut(s) 98, 213
Msp20I TGGCCA 1 cut(s) 367
MspR9I CCNGG 2 cut(s) 183, 456
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 2 cut(s) 183, 456
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 2 cut(s) 178, 333
NlaIII CATG 4 cut(s) 13, 110, 151, 529
NlaIV GGNNCC 2 cut(s) 180, 453
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PflFI GACNNNGTC 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 3 cut(s) 133, 383, 611
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 181, 454
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 2 cut(s) 181, 454
PspN4I GGNNCC 2 cut(s) 180, 453
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PsuI RGATCY 1 cut(s) 178
PsyI GACNNNGTC 1 cut(s) 510
RsaI GTAC 2 cut(s) 258, 419
RsaNI GTAC 2 cut(s) 257, 418
SaqAI TTAA 2 cut(s) 98, 213
SatI GCNGC 3 cut(s) 132, 382, 610
Sau3AI GATC 2 cut(s) 178, 333
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 183, 456
SduI GDGCHC 1 cut(s) 318
SetI ASST 8 cut(s) 26, 187, 373, 457, 482, 511, 551, 562
SinI GGWCC 1 cut(s) 452
Sse9I AATT 4 cut(s) 225, 326, 347, 393
SsiI CCGC 4 cut(s) 134, 381, 529, 609
SspMI CTAG 3 cut(s) 464, 534, 614
StyD4I CCNGG 2 cut(s) 181, 454
TaaI ACNGT 2 cut(s) 445, 492
TaiI ACGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 61, 138
TasI AATT 4 cut(s) 225, 326, 347, 393
TatI WGTACW 2 cut(s) 256, 417
TauI GCSGC 2 cut(s) 384, 612
Tru1I TTAA 2 cut(s) 98, 213
Tru9I TTAA 2 cut(s) 98, 213
TscAI CASTG 3 cut(s) 196, 343, 497
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 60, 274
TspRI CASTG 3 cut(s) 196, 343, 497
Tth111I GACNNNGTC 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 2 cut(s) 326, 393
XspI CTAG 3 cut(s) 464, 534, 614
ZrmI AGTACT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.