Rh3AG303300

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014646
Physical Location & Seq
Reverse (-)
37427366 .. 37432769
5404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG303300.1

Sequence Viewer

Length: 537 bp
ATGAATTCTACAGAGAATGGATCTTCGAATTTAGCTTTCTCCCACCCACTCTTGGCAGCAGACCCGTCTCTGAGACGATTCAAGTCGCATAAGAAGGGTGTGTTGGCGATCAAAAGGATTGGGGAGGTTCTCATAGTTGTCGTTATTGTTGTCAGGTTTGTCAAGATGTTTACCTCAAGGAAGAAGATTCATAAGGATAAGGATGCCGAGCCGACTGAGTTTGAAGAGTCGGTTGCACAAGTTGAAGAAGCAGTCGTCCAGCAAACCAGAATGAATGAAAAGCCAGAATGGATGGAGAGATTTTTAGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCTATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTATGGCATCAGGCCGGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTGCACAAATTTTGGTACATGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

178

Amino Acids

20.39

Weight (kDa)

7.7

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 386
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 4 cut(s) 4, 28, 447, 516
AfaI GTAC 3 cut(s) 368, 401, 525
AfiI CCNNNNNNNGG 2 cut(s) 52, 347
AflIII ACRYGT 1 cut(s) 457
AgeI ACCGGT 1 cut(s) 363
AgsI TTSAA 4 cut(s) 82, 224, 245, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 35, 327, 335
AluI AGCT 3 cut(s) 35, 327, 335
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 2 cut(s) 67, 72
Alw44I GTGCAC 1 cut(s) 510
AlwI GGATC 1 cut(s) 28
AoxI GGCC 1 cut(s) 415
ApaLI GTGCAC 1 cut(s) 510
ApeKI GCWGC 2 cut(s) 56, 421
ApoI RAATTY 4 cut(s) 4, 28, 447, 516
AsiGI ACCGGT 1 cut(s) 363
AsuII TTCGAA 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 2 cut(s) 68, 433
BccI CCATC 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 67, 72
BfmI CTRYAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 386
BisI GCNGC 2 cut(s) 57, 422
BlsI GCNGC 2 cut(s) 58, 423
BmcAI AGTACT 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 353
BmsI GCATC 2 cut(s) 193, 419
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 347
Bse118I RCCGGY 2 cut(s) 363, 417
Bse1I ACTGG 2 cut(s) 355, 397
BseGI GGATG 4 cut(s) 208, 297, 337, 499
BseLI CCNNNNNNNGG 2 cut(s) 52, 347
BseMII CTCAG 3 cut(s) 62, 207, 402
BseNI ACTGG 2 cut(s) 355, 397
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 2 cut(s) 68, 433
BsgI GTGCAG 1 cut(s) 355
BshFI GGCC 1 cut(s) 417
BshTI ACCGGT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 2 cut(s) 364, 418
BslI CCNNNNNNNGG 2 cut(s) 52, 347
BsmAI GTCTC 2 cut(s) 67, 72
BsmBI CGTCTC 2 cut(s) 67, 72
BsnI GGCC 1 cut(s) 417
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 2 cut(s) 20, 108
BspACI CCGC 1 cut(s) 427
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 3 cut(s) 63, 208, 401
BspLI GGNNCC 1 cut(s) 353
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 26
BsrFI RCCGGY 2 cut(s) 363, 417
BsrI ACTGG 2 cut(s) 355, 397
BssAI RCCGGY 2 cut(s) 363, 417
BssMI GATC 2 cut(s) 20, 108
Bst4CI ACNGT 2 cut(s) 404, 509
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 3 cut(s) 71, 216, 388
BstF5I GGATG 4 cut(s) 208, 297, 337, 499
BstKTI GATC 2 cut(s) 23, 111
BstMAI GTCTC 2 cut(s) 67, 72
BstMBI GATC 2 cut(s) 20, 108
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 530
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 514
BstV1I GCAGC 2 cut(s) 68, 433
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 4 cut(s) 208, 297, 337, 499
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 419
Cfr10I RCCGGY 2 cut(s) 363, 417
CseI GACGC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 367, 400, 524
CspAI ACCGGT 1 cut(s) 363
CviAII CATG 2 cut(s) 434, 527
CviJI RGCY 6 cut(s) 35, 211, 283, 327, 335, 417
CviKI_1 RGCY 6 cut(s) 35, 211, 283, 327, 335, 417
CviQI GTAC 3 cut(s) 367, 400, 524
DdeI CTNAG 3 cut(s) 71, 216, 388
DpnI GATC 2 cut(s) 22, 110
DpnII GATC 2 cut(s) 20, 108
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 4
Esp3I CGTCTC 2 cut(s) 67, 72
FaeI CATG 2 cut(s) 437, 530
FaiI YATR 7 cut(s) 90, 134, 192, 407, 435, 440, 528
FatI CATG 2 cut(s) 433, 526
Fnu4HI GCNGC 2 cut(s) 57, 422
FokI GGATG 4 cut(s) 215, 304, 324, 506
Fsp4HI GCNGC 2 cut(s) 57, 422
GluI GCNGC 2 cut(s) 57, 422
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 364, 418
HgaI GACGC 1 cut(s) 479
Hin1II CATG 2 cut(s) 437, 530
HinfI GANTC 3 cut(s) 78, 187, 227
HpaII CCGG 2 cut(s) 364, 418
Hpy166II GTNNAC 2 cut(s) 171, 512
Hpy188I TCNGA 2 cut(s) 72, 487
Hpy188III TCNNGA 2 cut(s) 163, 467
Hpy8I GTNNAC 2 cut(s) 171, 512
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 404, 509
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 4 cut(s) 236, 372, 381, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 3 cut(s) 71, 216, 388
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 437, 530
KroI GCCGGC 1 cut(s) 417
KroNI GCCGGC 1 cut(s) 419
Kzo9I GATC 2 cut(s) 20, 108
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 2 cut(s) 68, 433
LweI GCATC 2 cut(s) 193, 419
MaeII ACGT 1 cut(s) 459
MalI GATC 2 cut(s) 22, 110
MboI GATC 2 cut(s) 20, 108
MboII GAAGA 5 cut(s) 15, 193, 196, 236, 257
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 5 cut(s) 4, 28, 447, 516, 532
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 2 cut(s) 118, 184
MroNI GCCGGC 1 cut(s) 417
MseI TTAA 2 cut(s) 443, 535
MspI CCGG 2 cut(s) 364, 418
MwoI GCNNNNNNNGC 1 cut(s) 378
NaeI GCCGGC 1 cut(s) 419
NdeII GATC 2 cut(s) 20, 108
NgoMIV GCCGGC 1 cut(s) 417
NlaIII CATG 2 cut(s) 437, 530
NlaIV GGNNCC 1 cut(s) 353
NmeAIII GCCGAG 1 cut(s) 232
NspI RCATGY 1 cut(s) 530
NspV TTCGAA 1 cut(s) 26
PaqCI CACCTGC 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 78, 187
PflFI GACNNNGTC 1 cut(s) 473
PinAI ACCGGT 1 cut(s) 363
PkrI GCNGC 2 cut(s) 58, 423
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 353
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 3 cut(s) 368, 401, 525
RsaNI GTAC 3 cut(s) 367, 400, 524
SaqAI TTAA 2 cut(s) 443, 535
SatI GCNGC 2 cut(s) 57, 422
Sau3AI GATC 2 cut(s) 20, 108
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 514
SetI ASST 9 cut(s) 37, 129, 158, 176, 329, 337, 380, 394, 462
SfaNI GCATC 2 cut(s) 193, 419
SfcI CTRYAG 1 cut(s) 9
SfuI TTCGAA 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 5 cut(s) 4, 28, 447, 516, 532
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 500
TaaI ACNGT 2 cut(s) 404, 509
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 26
TasI AATT 5 cut(s) 4, 28, 447, 516, 532
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 2 cut(s) 78, 187
Tru1I TTAA 2 cut(s) 443, 535
Tru9I TTAA 2 cut(s) 443, 535
TseI GCWGC 2 cut(s) 56, 421
TspDTI ATGAA 5 cut(s) 17, 179, 287, 291, 510
Tth111I GACNNNGTC 1 cut(s) 473
VneI GTGCAC 1 cut(s) 510
XapI RAATTY 4 cut(s) 4, 28, 447, 516
XceI RCATGY 1 cut(s) 530
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.