Rh3CG336500

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0014646
Physical Location & Seq
Reverse (-)
37569893 .. 37571373
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG336500.1

Sequence Viewer

Length: 366 bp
ATGAGTACTACTACTAGTGAGGCATCGATGAGTTCATATTCTCCGTCTTCTAATACGTCAATGGAACAGGTTGAAGAAGCAGTCTTCCAGCAAACCAGAATGAATGAAAAGCCAGAATGGATGGAAAGATTTTTAGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCCATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTATGGCATCAGGCCCGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTACACAAATTTTGGTACATGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

121

Amino Acids

13.87

Weight (kDa)

5.34

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 215
AciI CCGC 2 cut(s) 248, 256
AcsI RAATTY 2 cut(s) 276, 345
AfaI GTAC 5 cut(s) 7, 197, 230, 340, 354
AfiI CCNNNNNNNGG 2 cut(s) 176, 177
AflIII ACRYGT 1 cut(s) 286
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 2 cut(s) 74, 190
AhlI ACTAGT 1 cut(s) 14
AluBI AGCT 2 cut(s) 156, 164
AluI AGCT 2 cut(s) 156, 164
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 2 cut(s) 276, 345
AsiGI ACCGGT 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 39, 76
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 115
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BmcAI AGTACT 2 cut(s) 7, 230
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 182
BmsI GCATC 2 cut(s) 32, 248
BpiI GAAGAC 2 cut(s) 39, 76
Bsa29I ATCGAT 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 177
Bse118I RCCGGY 1 cut(s) 192
Bse1I ACTGG 2 cut(s) 184, 226
BseCI ATCGAT 1 cut(s) 26
BseGI GGATG 3 cut(s) 126, 166, 328
BseLI CCNNNNNNNGG 2 cut(s) 176, 177
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 184, 226
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 26
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 176, 177
BsnI GGCC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 338
BspACI CCGC 2 cut(s) 248, 256
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 230
BspDI ATCGAT 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 338
BsrI ACTGG 2 cut(s) 184, 226
BssAI RCCGGY 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 233, 338
BstAPI GCANNNNNTGC 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 217
BstF5I GGATG 3 cut(s) 126, 166, 328
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 39, 76
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 1 cut(s) 246
BsuTUI ATCGAT 1 cut(s) 26
BtsCI GGATG 3 cut(s) 126, 166, 328
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 26
CseI GACGC 1 cut(s) 308
Csp6I GTAC 5 cut(s) 6, 196, 229, 339, 353
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 2 cut(s) 263, 356
CviJI RGCY 4 cut(s) 112, 156, 164, 246
CviKI_1 RGCY 4 cut(s) 112, 156, 164, 246
CviQI GTAC 5 cut(s) 6, 196, 229, 339, 353
DdeI CTNAG 1 cut(s) 217
FaeI CATG 2 cut(s) 266, 359
FaiI YATR 5 cut(s) 37, 236, 264, 269, 357
FatI CATG 2 cut(s) 262, 355
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 3 cut(s) 133, 153, 335
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 246
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 266, 359
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 341
HpyCH4III ACNGT 2 cut(s) 233, 338
HpyCH4IV ACGT 2 cut(s) 56, 288
HpyCH4V TGCA 2 cut(s) 201, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 2 cut(s) 56, 288
Hsp92II CATG 2 cut(s) 266, 359
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 2 cut(s) 32, 248
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 56, 288
MboII GAAGA 3 cut(s) 39, 76, 86
MluCI AATT 3 cut(s) 276, 345, 361
MnlI CCTC 1 cut(s) 13
MseI TTAA 2 cut(s) 272, 364
MspI CCGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 207
NlaIII CATG 2 cut(s) 266, 359
NlaIV GGNNCC 1 cut(s) 182
NspI RCATGY 1 cut(s) 359
PaqCI CACCTGC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 245
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 5 cut(s) 7, 197, 230, 340, 354
RsaNI GTAC 5 cut(s) 6, 196, 229, 339, 353
SaqAI TTAA 2 cut(s) 272, 364
SatI GCNGC 1 cut(s) 251
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 2 cut(s) 7, 230
SetI ASST 7 cut(s) 59, 72, 158, 166, 209, 223, 291
SfaNI GCATC 2 cut(s) 32, 248
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 3 cut(s) 276, 345, 361
SsiI CCGC 2 cut(s) 248, 256
SspI AATATT 1 cut(s) 329
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 233, 338
TaiI ACGT 2 cut(s) 59, 291
TaqI TCGA 1 cut(s) 26
TasI AATT 3 cut(s) 276, 345, 361
TatI WGTACW 3 cut(s) 5, 228, 338
Tru1I TTAA 2 cut(s) 272, 364
Tru9I TTAA 2 cut(s) 272, 364
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 4 cut(s) 24, 116, 120, 339
TspGWI ACGGA 1 cut(s) 33
Tth111I GACNNNGTC 1 cut(s) 302
XapI RAATTY 2 cut(s) 276, 345
XceI RCATGY 1 cut(s) 359
XspI CTAG 1 cut(s) 15
ZrmI AGTACT 2 cut(s) 7, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.