RchiOBHm_Chr3g0492341

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014646
Physical Location & Seq
Reverse (-)
39074240 .. 39075119
880 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45523

Sequence Viewer

Length: 600 bp
ATGGATCAATGTAAATTGCAGGTTGAAGAAGCAGTCGTCCAGCAAACCAGAATGAATGAAAAGCCAGAATGGATGGAGAGATTTTTAGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCTATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTATGGCATCAGGCCGGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTGCACAAATTTTGCCTTACAAGTCCAACCAATCGCTGGTTATAGCACTGAAGCCTCTGCCGCATTTGGGTGGAGCAAGCAAGTATTCCTGCAAAACATGTACACGACGGGTGACGTACCCGTACTCATACTGTTGCCTCCATTGCAAGGTGGTGGCCTTATCGAGCATGTCAAGCGTTTCCTCATCAGCTGCTTCATTGCTTCGTGACCAGACTAGTCCCAACAAGCAAAAGAAAAGGAGGGTTGCCGCCAAACCCCAGAGCTCACTTCACAGACGAAAGGGAAAACCTTTCAGAGCTCCCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

199

Amino Acids

22.73

Weight (kDa)

9.37

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 79 - 147 5.1e-15 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 10, 167
AccB7I CCANNNNNTGG 1 cut(s) 325
AciI CCGC 3 cut(s) 208, 350, 537
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 228, 297
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 5 cut(s) 149, 182, 391, 407, 413
AfiI CCNNNNNNNGG 4 cut(s) 128, 325, 356, 436
AflIII ACRYGT 2 cut(s) 238, 386
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 26, 142
AhlI ACTAGT 1 cut(s) 503
AluBI AGCT 5 cut(s) 108, 116, 479, 552, 587
AluI AGCT 5 cut(s) 108, 116, 479, 552, 587
Alw21I GWGCWC 3 cut(s) 295, 554, 589
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 196, 444
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 202, 479
ApoI RAATTY 2 cut(s) 228, 297
AsiGI ACCGGT 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 554, 589
Bbv12I GWGCWC 3 cut(s) 295, 554, 589
BbvI GCAGC 2 cut(s) 214, 466
BccI CCATC 1 cut(s) 67
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 1 cut(s) 504
BfuAI ACCTGC 2 cut(s) 10, 167
BisI GCNGC 4 cut(s) 203, 350, 480, 537
BlsI GCNGC 4 cut(s) 204, 351, 481, 538
BmcAI AGTACT 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 134
BmsI GCATC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 325, 356, 436
Bse118I RCCGGY 2 cut(s) 144, 198
Bse1I ACTGG 2 cut(s) 136, 178
Bse3DI GCAATG 2 cut(s) 430, 485
BseGI GGATG 3 cut(s) 78, 118, 280
BseLI CCNNNNNNNGG 4 cut(s) 128, 325, 356, 436
BseMI GCAATG 2 cut(s) 430, 485
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 136, 178
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 2 cut(s) 214, 466
BsgI GTGCAG 1 cut(s) 136
BshFI GGCC 2 cut(s) 198, 446
BshTI ACCGGT 1 cut(s) 144
BsiHKAI GWGCWC 3 cut(s) 295, 554, 589
BsiSI CCGG 2 cut(s) 145, 199
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 4 cut(s) 128, 325, 356, 436
BsmFI GGGAC 1 cut(s) 492
BsnI GGCC 2 cut(s) 198, 446
Bsp1286I GDGCHC 3 cut(s) 295, 554, 589
Bsp1407I TGTACA 1 cut(s) 389
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 3 cut(s) 208, 350, 537
BspANI GGCC 2 cut(s) 198, 446
BspCNI CTCAG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 134
BspMI ACCTGC 2 cut(s) 10, 167
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 430, 485
BsrFI RCCGGY 2 cut(s) 144, 198
BsrGI TGTACA 1 cut(s) 389
BsrI ACTGG 2 cut(s) 136, 178
BssAI RCCGGY 2 cut(s) 144, 198
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 3 cut(s) 185, 290, 422
BstAPI GCANNNNNTGC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 200, 367
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 3 cut(s) 78, 118, 280
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 4 cut(s) 159, 349, 432, 462
BstNSI RCATGY 2 cut(s) 390, 460
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 214, 466
BsuRI GGCC 2 cut(s) 198, 446
BtsCI GGATG 3 cut(s) 78, 118, 280
BtsIMutI CAGTG 1 cut(s) 335
BveI ACCTGC 2 cut(s) 10, 167
Cac8I GCNNGC 2 cut(s) 200, 367
Cfr10I RCCGGY 2 cut(s) 144, 198
CseI GACGC 1 cut(s) 260
Csp6I GTAC 5 cut(s) 148, 181, 390, 406, 412
CspAI ACCGGT 1 cut(s) 144
CviAII CATG 3 cut(s) 215, 387, 457
CviJI RGCY 9 cut(s) 64, 108, 116, 198, 343, 446, 479, 552, 587
CviKI_1 RGCY 9 cut(s) 64, 108, 116, 198, 343, 446, 479, 552, 587
CviQI GTAC 5 cut(s) 148, 181, 390, 406, 412
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Ecl136II GAGCTC 2 cut(s) 552, 587
Eco24I GRGCYC 2 cut(s) 554, 589
Eco53kI GAGCTC 2 cut(s) 552, 587
Eco57I CTGAAG 1 cut(s) 359
EcoICRI GAGCTC 2 cut(s) 552, 587
EcoT38I GRGCYC 2 cut(s) 554, 589
FaeI CATG 3 cut(s) 218, 390, 460
FaiI YATR 7 cut(s) 188, 216, 221, 332, 388, 418, 458
FaqI GGGAC 1 cut(s) 492
FatI CATG 3 cut(s) 214, 386, 456
Fnu4HI GCNGC 4 cut(s) 203, 350, 480, 537
FokI GGATG 3 cut(s) 85, 105, 287
FriOI GRGCYC 2 cut(s) 554, 589
Fsp4HI GCNGC 4 cut(s) 203, 350, 480, 537
FspBI CTAG 1 cut(s) 504
GluI GCNGC 4 cut(s) 203, 350, 480, 537
HaeIII GGCC 2 cut(s) 198, 446
HapII CCGG 2 cut(s) 145, 199
HgaI GACGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 218, 390, 460
HpaII CCGG 2 cut(s) 145, 199
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 2 cut(s) 293, 392
Hpy188I TCNGA 3 cut(s) 268, 584, 599
Hpy188III TCNNGA 2 cut(s) 248, 494
Hpy8I GTNNAC 2 cut(s) 293, 392
Hpy99I CGWCG 1 cut(s) 399
HpyCH4III ACNGT 3 cut(s) 185, 290, 422
HpyCH4IV ACGT 2 cut(s) 240, 404
HpyCH4V TGCA 6 cut(s) 19, 153, 162, 293, 381, 435
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 349, 432, 462
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 2 cut(s) 240, 404
Hsp92II CATG 3 cut(s) 218, 390, 460
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 3 cut(s) 105, 362, 592
Lsp1109I GCAGC 2 cut(s) 214, 466
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 504
MaeII ACGT 2 cut(s) 240, 404
MaeIII GTNAC 2 cut(s) 400, 494
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 3 cut(s) 295, 554, 589
MluCI AATT 3 cut(s) 14, 228, 297
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 4 cut(s) 354, 437, 481, 522
MroNI GCCGGC 1 cut(s) 198
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 145, 199
MwoI GCNNNNNNNGC 4 cut(s) 159, 349, 432, 462
NaeI GCCGGC 1 cut(s) 200
NdeII GATC 1 cut(s) 4
NgoMIV GCCGGC 1 cut(s) 198
NlaIII CATG 3 cut(s) 218, 390, 460
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 2 cut(s) 400, 494
NspI RCATGY 2 cut(s) 390, 460
PaqCI CACCTGC 1 cut(s) 167
PciI ACATGT 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 325
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 4 cut(s) 204, 351, 481, 538
PscI ACATGT 1 cut(s) 386
Psp124BI GAGCTC 2 cut(s) 554, 589
PspN4I GGNNCC 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 5 cut(s) 149, 182, 391, 407, 413
RsaNI GTAC 5 cut(s) 148, 181, 390, 406, 412
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 2 cut(s) 554, 589
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 4 cut(s) 203, 350, 480, 537
Sau3AI GATC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 182
SduI GDGCHC 3 cut(s) 295, 554, 589
SfaNI GCATC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 357
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 3 cut(s) 14, 228, 297
SsiI CCGC 3 cut(s) 208, 350, 537
SspI AATATT 1 cut(s) 281
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 2 cut(s) 554, 589
TaaI ACNGT 3 cut(s) 185, 290, 422
TaiI ACGT 2 cut(s) 243, 407
TaqI TCGA 1 cut(s) 452
TasI AATT 3 cut(s) 14, 228, 297
TatI WGTACW 2 cut(s) 180, 389
TauI GCSGC 2 cut(s) 352, 539
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 2 cut(s) 400, 494
TseI GCWGC 2 cut(s) 202, 479
Tsp45I GTSAC 2 cut(s) 400, 494
TspDTI ATGAA 4 cut(s) 68, 72, 291, 474
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 1 cut(s) 254
Van91I CCANNNNNTGG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 291
XapI RAATTY 2 cut(s) 228, 297
XceI RCATGY 2 cut(s) 390, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XspI CTAG 1 cut(s) 504
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.