Rroxscaffold_6G00392400

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014646
Physical Location & Seq
Forward (+)
11942205 .. 11948332
6128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392400.1

Sequence Viewer

Length: 675 bp
ATGGTTGTTGCTTGGATTTGGACCTGGGTTCGAGATTTGGGCTTAATCAGGGCTGTTGTGTGGGTTTGGGCTCATCTATTGGGCTTTGACCTGGATGTTGAAGAAGCAGTCGTCCAGCAAACCAGAATGAATGAAAAGCCAGAATGGATGGAGAGATTTTTAGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCTATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTATGGCATCAGGCCGGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTACACAAATTTTGCCTTACAAGTCCAACCAATCGCTGGTTATAGCATTGAAGCCTCTGCCGCATTTGGGTGGAGCAAGCAAGTATTCCTGCAAAACATGTACACGACGGGTGACGTACCCGTACTCATACTGTTGCCTCCATTGCAAGGTGGTGGCCTTATCGAGCATGTCATGCGTTTCCTCATCAGCTGGTCCATTGCTTCGTGACCAGACTAGTCCCAACAAGCAAAAGAAAAAGAGTGTTGCCGCCAAACCCCAGAGCTCACTTCACAGACGAAAGGGAAAACCTTTCAGAGCTCCCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

224

Amino Acids

25.65

Weight (kDa)

9.23

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 104 - 172 4.7e-15 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 400
AciI CCGC 3 cut(s) 283, 425, 612
AcsI RAATTY 2 cut(s) 303, 372
AfaI GTAC 6 cut(s) 224, 257, 367, 466, 482, 488
AfiI CCNNNNNNNGG 4 cut(s) 203, 400, 431, 511
AflIII ACRYGT 2 cut(s) 313, 461
AgeI ACCGGT 1 cut(s) 219
AgsI TTSAA 3 cut(s) 101, 217, 415
AhlI ACTAGT 1 cut(s) 578
AjnI CCWGG 2 cut(s) 23, 90
AluBI AGCT 5 cut(s) 183, 191, 554, 627, 662
AluI AGCT 5 cut(s) 183, 191, 554, 627, 662
Alw21I GWGCWC 2 cut(s) 629, 664
AoxI GGCC 2 cut(s) 271, 519
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 2 cut(s) 303, 372
AsiGI ACCGGT 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 21, 557
AsuHPI GGTGA 1 cut(s) 487
AvaII GGWCC 2 cut(s) 21, 557
BanII GRGCYC 3 cut(s) 73, 629, 664
Bbv12I GWGCWC 2 cut(s) 629, 664
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 2 cut(s) 25, 92
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 278, 425, 612
BlsI GCNGC 3 cut(s) 279, 426, 613
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 2 cut(s) 25, 92
Bme18I GGWCC 2 cut(s) 21, 557
BmgT120I GGNCC 2 cut(s) 21, 557
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 25, 92
BmsI GCATC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 400, 431, 511
Bse118I RCCGGY 2 cut(s) 219, 273
Bse1I ACTGG 2 cut(s) 211, 253
Bse3DI GCAATG 2 cut(s) 505, 560
BseBI CCWGG 2 cut(s) 25, 92
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 4 cut(s) 100, 153, 193, 355
BseLI CCNNNNNNNGG 4 cut(s) 203, 400, 431, 511
BseMI GCAATG 2 cut(s) 505, 560
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 211, 253
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 2 cut(s) 273, 521
BshTI ACCGGT 1 cut(s) 219
BsiHKAI GWGCWC 2 cut(s) 629, 664
BsiSI CCGG 2 cut(s) 220, 274
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 4 cut(s) 203, 400, 431, 511
BsmFI GGGAC 1 cut(s) 567
BsnI GGCC 2 cut(s) 273, 521
Bsp1286I GDGCHC 3 cut(s) 73, 629, 664
Bsp1407I TGTACA 2 cut(s) 365, 464
BspACI CCGC 3 cut(s) 283, 425, 612
BspANI GGCC 2 cut(s) 273, 521
BspCNI CTCAG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 242
BsrDI GCAATG 2 cut(s) 505, 560
BsrFI RCCGGY 2 cut(s) 219, 273
BsrGI TGTACA 2 cut(s) 365, 464
BsrI ACTGG 2 cut(s) 211, 253
BssAI RCCGGY 2 cut(s) 219, 273
BssECI CCNNGG 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 25, 92
Bst4CI ACNGT 3 cut(s) 260, 365, 497
BstAPI GCANNNNNTGC 2 cut(s) 234, 537
BstAUI TGTACA 2 cut(s) 365, 464
BstC8I GCNNGC 2 cut(s) 275, 442
BstDEI CTNAG 1 cut(s) 244
BstF5I GGATG 4 cut(s) 100, 153, 193, 355
BstMWI GCNNNNNNNGC 4 cut(s) 234, 424, 507, 537
BstNI CCWGG 2 cut(s) 25, 92
BstNSI RCATGY 2 cut(s) 465, 535
BstSCI CCNGG 2 cut(s) 23, 90
BstV1I GCAGC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 273, 521
BtsCI GGATG 4 cut(s) 100, 153, 193, 355
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 275, 442
Cfr10I RCCGGY 2 cut(s) 219, 273
Cfr13I GGNCC 2 cut(s) 21, 557
CseI GACGC 1 cut(s) 335
Csp6I GTAC 6 cut(s) 223, 256, 366, 465, 481, 487
CspAI ACCGGT 1 cut(s) 219
CviAII CATG 4 cut(s) 290, 462, 532, 537
CviQI GTAC 6 cut(s) 223, 256, 366, 465, 481, 487
DdeI CTNAG 1 cut(s) 244
Ecl136II GAGCTC 2 cut(s) 627, 662
Eco24I GRGCYC 3 cut(s) 73, 629, 664
Eco47I GGWCC 2 cut(s) 21, 557
Eco53kI GAGCTC 2 cut(s) 627, 662
EcoICRI GAGCTC 2 cut(s) 627, 662
EcoRII CCWGG 2 cut(s) 23, 90
EcoT38I GRGCYC 3 cut(s) 73, 629, 664
FaeI CATG 4 cut(s) 293, 465, 535, 540
FaiI YATR 8 cut(s) 263, 291, 296, 407, 463, 493, 533, 538
FaqI GGGAC 1 cut(s) 567
FatI CATG 4 cut(s) 289, 461, 531, 536
Fnu4HI GCNGC 3 cut(s) 278, 425, 612
FokI GGATG 4 cut(s) 107, 160, 180, 362
FriOI GRGCYC 3 cut(s) 73, 629, 664
Fsp4HI GCNGC 3 cut(s) 278, 425, 612
FspBI CTAG 1 cut(s) 579
GluI GCNGC 3 cut(s) 278, 425, 612
HaeIII GGCC 2 cut(s) 273, 521
HapII CCGG 2 cut(s) 220, 274
HgaI GACGC 1 cut(s) 335
Hin1II CATG 4 cut(s) 293, 465, 535, 540
HpaII CCGG 2 cut(s) 220, 274
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 2 cut(s) 368, 467
Hpy188I TCNGA 3 cut(s) 343, 659, 674
Hpy188III TCNNGA 3 cut(s) 32, 323, 569
Hpy8I GTNNAC 2 cut(s) 368, 467
Hpy99I CGWCG 1 cut(s) 474
HpyCH4III ACNGT 3 cut(s) 260, 365, 497
HpyCH4IV ACGT 2 cut(s) 315, 479
HpyCH4V TGCA 4 cut(s) 228, 237, 456, 510
HpyF10VI GCNNNNNNNGC 4 cut(s) 234, 424, 507, 537
HpyF3I CTNAG 1 cut(s) 244
HpySE526I ACGT 2 cut(s) 315, 479
Hsp92II CATG 4 cut(s) 293, 465, 535, 540
KroI GCCGGC 1 cut(s) 273
KroNI GCCGGC 1 cut(s) 275
LmnI GCTCC 3 cut(s) 180, 437, 667
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 275
MaeI CTAG 1 cut(s) 579
MaeII ACGT 2 cut(s) 315, 479
MaeIII GTNAC 2 cut(s) 475, 569
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 3 cut(s) 73, 629, 664
MluCI AATT 2 cut(s) 303, 372
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 3 cut(s) 429, 512, 556
MroNI GCCGGC 1 cut(s) 273
MseI TTAA 2 cut(s) 44, 299
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 2 cut(s) 220, 274
MspR9I CCNGG 2 cut(s) 25, 92
MvaI CCWGG 2 cut(s) 25, 92
MwoI GCNNNNNNNGC 4 cut(s) 234, 424, 507, 537
NaeI GCCGGC 1 cut(s) 275
NgoMIV GCCGGC 1 cut(s) 273
NlaIII CATG 4 cut(s) 293, 465, 535, 540
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 2 cut(s) 475, 569
NspI RCATGY 2 cut(s) 465, 535
PaqCI CACCTGC 1 cut(s) 242
PciI ACATGT 1 cut(s) 461
PdiI GCCGGC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 400
PinAI ACCGGT 1 cut(s) 219
PkrI GCNGC 3 cut(s) 279, 426, 613
PscI ACATGT 1 cut(s) 461
Psp124BI GAGCTC 2 cut(s) 629, 664
Psp6I CCWGG 2 cut(s) 23, 90
PspGI CCWGG 2 cut(s) 23, 90
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 2 cut(s) 21, 557
PsyI GACNNNGTC 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 6 cut(s) 224, 257, 367, 466, 482, 488
RsaNI GTAC 6 cut(s) 223, 256, 366, 465, 481, 487
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 2 cut(s) 629, 664
SaqAI TTAA 2 cut(s) 44, 299
SatI GCNGC 3 cut(s) 278, 425, 612
Sau96I GGNCC 2 cut(s) 21, 557
ScaI AGTACT 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 25, 92
SduI GDGCHC 3 cut(s) 73, 629, 664
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 2 cut(s) 21, 557
SmiMI CAYNNNNRTG 1 cut(s) 432
SpeI ACTAGT 1 cut(s) 578
Sse9I AATT 2 cut(s) 303, 372
SsiI CCGC 3 cut(s) 283, 425, 612
SspI AATATT 1 cut(s) 356
SspMI CTAG 1 cut(s) 579
SstI GAGCTC 2 cut(s) 629, 664
StyD4I CCNGG 2 cut(s) 23, 90
TaaI ACNGT 3 cut(s) 260, 365, 497
TaiI ACGT 2 cut(s) 318, 482
TaqI TCGA 2 cut(s) 31, 527
TasI AATT 2 cut(s) 303, 372
TatI WGTACW 3 cut(s) 255, 365, 464
TauI GCSGC 2 cut(s) 427, 614
Tru1I TTAA 2 cut(s) 44, 299
Tru9I TTAA 2 cut(s) 44, 299
TseFI GTSAC 2 cut(s) 475, 569
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 2 cut(s) 475, 569
TspDTI ATGAA 3 cut(s) 143, 147, 366
Tth111I GACNNNGTC 1 cut(s) 329
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 21, 557
XapI RAATTY 2 cut(s) 303, 372
XceI RCATGY 2 cut(s) 465, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XspI CTAG 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.