FvH4_1g29980

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014646
Physical Location & Seq
Forward (+)
23716160 .. 23717781
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29980.t1

Sequence Viewer

Length: 588 bp
ATGGTCCGAAAGGTTGAAGAAGTAGTCCAGCAAAGCGGAAAGAATGAAAAGCCAGAATGGATTGAGGGGTTTTTAGAAAGTAGCTTCTTTGGGAGCTGTTCAGCTCATCCAATTCACGGGAACCAGTTGAATCGATACTGCACTACTTGCCGTCTCTCAGGTTGCAAGTACTGTATGACCTCAGGCCGGCAGCACCGCCACCATGAAGTATTAAAGATTTACAGACACGTCTATCAGGACGCTGTCTTACTCTCTCAAATGGATGAATATTTGGACTGTACACAAATTCTGCCTTACAAGTCCAACCAATCTCTGGTTATAGCATTGAAGCCTCTCCCGCATTTGGGTGGTGCAAGCAGGTATTCTTGTCAAACATGTGCCCGACGGGTGACGTACCCCTACTCATACTGCTGCCTCCATTGCAAGGTCGTGGCCTTATCGAGCATGTCAAGCGATTCCACAACGCCTGCTGCATTGCTTCACGACCAGACAAGTCCCAACAAGCAAAAGAAAAAGAAGACTGAGGCCAAACCCCAGGGCTCACTTCACAGACGAAAGGGAAAACCTTTTAGAGCTCCCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

196

Amino Acids

22.2

Weight (kDa)

9.39

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 75 - 143 1.3e-14 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 313
AciI CCGC 3 cut(s) 36, 196, 338
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 3 cut(s) 170, 280, 395
AfiI CCNNNNNNNGG 6 cut(s) 116, 186, 313, 343, 344, 424
AflIII ACRYGT 2 cut(s) 226, 374
AgsI TTSAA 3 cut(s) 17, 130, 328
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 4 cut(s) 84, 96, 104, 575
AluI AGCT 4 cut(s) 84, 96, 104, 575
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 3 cut(s) 184, 432, 525
ApeKI GCWGC 3 cut(s) 190, 411, 470
ApoI RAATTY 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 382
BanII GRGCYC 2 cut(s) 542, 577
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 3 cut(s) 202, 398, 457
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 536
BcoDI GTCTC 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 3 cut(s) 191, 412, 471
BlsI GCNGC 3 cut(s) 192, 413, 472
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 536
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 524
Bsa29I ATCGAT 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 534, 535
Bsc4I CCNNNNNNNGG 6 cut(s) 116, 186, 313, 343, 344, 424
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 124
Bse21I CCTNAGG 1 cut(s) 181
Bse3DI GCAATG 2 cut(s) 418, 473
BseBI CCWGG 1 cut(s) 536
BseCI ATCGAT 1 cut(s) 133
BseDI CCNNGG 2 cut(s) 534, 535
BseGI GGATG 2 cut(s) 106, 268
BseLI CCNNNNNNNGG 6 cut(s) 116, 186, 313, 343, 344, 424
BseMI GCAATG 2 cut(s) 418, 473
BseMII CTCAG 3 cut(s) 171, 195, 513
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 3 cut(s) 202, 398, 457
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 3 cut(s) 186, 434, 527
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 6 cut(s) 116, 186, 313, 343, 344, 424
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 3 cut(s) 186, 434, 527
Bsp1286I GDGCHC 3 cut(s) 382, 542, 577
Bsp1407I TGTACA 1 cut(s) 278
BspACI CCGC 3 cut(s) 36, 196, 338
BspANI GGCC 3 cut(s) 186, 434, 527
BspCNI CTCAG 3 cut(s) 170, 194, 514
BspDI ATCGAT 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 418, 473
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 278
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 534, 535
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 173, 278
BstAPI GCANNNNNTGC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 188, 355, 468
BstDEI CTNAG 3 cut(s) 157, 181, 522
BstF5I GGATG 2 cut(s) 106, 268
BstMAI GTCTC 1 cut(s) 158
BstMWI GCNNNNNNNGC 4 cut(s) 147, 337, 420, 450
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 2 cut(s) 378, 448
BstSCI CCNGG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 3 cut(s) 202, 398, 457
BstV2I GAAGAC 1 cut(s) 524
Bsu15I ATCGAT 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 181
BsuRI GGCC 3 cut(s) 186, 434, 527
BsuTUI ATCGAT 1 cut(s) 133
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 2 cut(s) 106, 268
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 188, 355, 468
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 133
CseI GACGC 1 cut(s) 248
Csp6I GTAC 3 cut(s) 169, 279, 394
CviAII CATG 3 cut(s) 203, 375, 445
CviQI GTAC 3 cut(s) 169, 279, 394
DdeI CTNAG 3 cut(s) 157, 181, 522
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 2 cut(s) 542, 577
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 534
EcoT38I GRGCYC 2 cut(s) 542, 577
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 3 cut(s) 206, 378, 448
FaiI YATR 6 cut(s) 176, 204, 320, 376, 406, 446
FaqI GGGAC 1 cut(s) 480
FatI CATG 3 cut(s) 202, 374, 444
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 191, 412, 471
FokI GGATG 2 cut(s) 93, 275
FriOI GRGCYC 2 cut(s) 542, 577
Fsp4HI GCNGC 3 cut(s) 191, 412, 471
GluI GCNGC 3 cut(s) 191, 412, 471
HaeIII GGCC 3 cut(s) 186, 434, 527
HapII CCGG 1 cut(s) 187
HgaI GACGC 1 cut(s) 248
Hin1II CATG 3 cut(s) 206, 378, 448
HinfI GANTC 2 cut(s) 130, 455
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 8, 587
Hpy188III TCNNGA 2 cut(s) 236, 482
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 387
HpyCH4III ACNGT 2 cut(s) 173, 278
HpyCH4IV ACGT 2 cut(s) 228, 392
HpyCH4V TGCA 5 cut(s) 141, 165, 353, 423, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 337, 420, 450
HpyF3I CTNAG 3 cut(s) 157, 181, 522
HpySE526I ACGT 2 cut(s) 228, 392
Hsp92II CATG 3 cut(s) 206, 378, 448
KroI GCCGGC 1 cut(s) 186
KroNI GCCGGC 1 cut(s) 188
LmnI GCTCC 2 cut(s) 93, 580
Lsp1109I GCAGC 3 cut(s) 202, 398, 457
MaeII ACGT 2 cut(s) 228, 392
MaeIII GTNAC 1 cut(s) 388
MboII GAAGA 2 cut(s) 29, 529
MhlI GDGCHC 3 cut(s) 382, 542, 577
MluCI AATT 2 cut(s) 111, 285
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 5 cut(s) 58, 190, 342, 425, 517
MroNI GCCGGC 1 cut(s) 186
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 4 cut(s) 147, 337, 420, 450
NaeI GCCGGC 1 cut(s) 188
NgoMIV GCCGGC 1 cut(s) 186
NlaIII CATG 3 cut(s) 206, 378, 448
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 2 cut(s) 378, 448
PasI CCCWGGG 1 cut(s) 535
PciI ACATGT 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 130, 455
PflFI GACNNNGTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 3 cut(s) 192, 413, 472
PscI ACATGT 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 242
RsaI GTAC 3 cut(s) 170, 280, 395
RsaNI GTAC 3 cut(s) 169, 279, 394
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 577
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 3 cut(s) 191, 412, 471
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 3 cut(s) 382, 542, 577
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 2 cut(s) 111, 285
SsiI CCGC 3 cut(s) 36, 196, 338
SspI AATATT 1 cut(s) 269
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 1 cut(s) 534
TaaI ACNGT 2 cut(s) 173, 278
TaiI ACGT 2 cut(s) 231, 395
TaqI TCGA 2 cut(s) 133, 440
TasI AATT 2 cut(s) 111, 285
TatI WGTACW 2 cut(s) 168, 278
TfiI GAWTC 2 cut(s) 130, 455
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 3 cut(s) 190, 411, 470
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 60, 219, 279
Tth111I GACNNNGTC 1 cut(s) 242
Van91I CCANNNNNTGG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 285
XceI RCATGY 2 cut(s) 378, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.