Rmu_sc0003156.1_g000025

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003156.1
OG0014646
Physical Location & Seq
Forward (+)
147427 .. 148202
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003156.1_g000025.1.cds

Sequence Viewer

Length: 483 bp
atggatcaatgtacattccaggttgaagaagcagtcgtccagcaaaccagaatgaatgaaaagccagaatggatggaaagatttttagaaagtagtttctttgggagctgttcagctcatcccattcacgggaaccagttgaaccggtactgcaccacctgcaatctctcaggttgccagtactgtatggcatcaggcccgcagcaccgccaccatgacatattaaaaatttacagacacgtttatcaggacgctgtcttactctctgaaatggatgaatatttggactccttacaagtccaaccaatcgctggttatagcattgaagcctctgccgcatttgggtggagcaagcaagtattcctgcaaaacatgtacacgtcgggtgacgtacccgtactcatactgttgcctccattgcaaggtggtggccttatcgagcatgtcaagcgtttcctcatcagctgctccattgcttcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

160

Amino Acids

18.11

Weight (kDa)

5.55

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 311
AciI CCGC 3 cut(s) 200, 208, 336
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 6 cut(s) 13, 149, 182, 377, 393, 399
AfiI CCNNNNNNNGG 5 cut(s) 128, 129, 311, 342, 422
AflIII ACRYGT 3 cut(s) 238, 372, 378
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 26, 142, 326
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 3 cut(s) 108, 116, 465
AluI AGCT 3 cut(s) 108, 116, 465
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 196, 430
ApeKI GCWGC 2 cut(s) 202, 465
ApoI RAATTY 1 cut(s) 228
AsiGI ACCGGT 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 398
BbvI GCAGC 2 cut(s) 214, 452
BccI CCATC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 3 cut(s) 203, 336, 466
BlsI GCNGC 3 cut(s) 204, 337, 467
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 129, 311, 342, 422
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 136, 178
Bse3DI GCAATG 2 cut(s) 416, 471
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 3 cut(s) 78, 118, 280
BseLI CCNNNNNNNGG 5 cut(s) 128, 129, 311, 342, 422
BseMI GCAATG 2 cut(s) 416, 471
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 136, 178
BseXI GCAGC 2 cut(s) 214, 452
BsgI GTGCAG 1 cut(s) 136
BshFI GGCC 2 cut(s) 198, 432
BshTI ACCGGT 1 cut(s) 144
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 5 cut(s) 128, 129, 311, 342, 422
BsnI GGCC 2 cut(s) 198, 432
Bsp1407I TGTACA 2 cut(s) 11, 375
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 3 cut(s) 200, 208, 336
BspANI GGCC 2 cut(s) 198, 432
BspCNI CTCAG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 167
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 416, 471
BsrFI RCCGGY 1 cut(s) 144
BsrGI TGTACA 2 cut(s) 11, 375
BsrI ACTGG 2 cut(s) 136, 178
BssAI RCCGGY 1 cut(s) 144
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 185, 408
BstAPI GCANNNNNTGC 1 cut(s) 159
BstAUI TGTACA 2 cut(s) 11, 375
BstC8I GCNNGC 2 cut(s) 200, 353
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 3 cut(s) 78, 118, 280
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 4 cut(s) 159, 335, 418, 448
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 2 cut(s) 376, 446
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 214, 452
BsuRI GGCC 2 cut(s) 198, 432
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 3 cut(s) 78, 118, 280
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 200, 353
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 260
Csp6I GTAC 6 cut(s) 12, 148, 181, 376, 392, 398
CspAI ACCGGT 1 cut(s) 144
CviAII CATG 3 cut(s) 215, 373, 443
CviJI RGCY 7 cut(s) 64, 108, 116, 198, 329, 432, 465
CviKI_1 RGCY 7 cut(s) 64, 108, 116, 198, 329, 432, 465
CviQI GTAC 6 cut(s) 12, 148, 181, 376, 392, 398
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 3 cut(s) 218, 376, 446
FaiI YATR 7 cut(s) 188, 216, 221, 318, 374, 404, 444
FatI CATG 3 cut(s) 214, 372, 442
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 203, 336, 466
FokI GGATG 3 cut(s) 85, 105, 287
Fsp4HI GCNGC 3 cut(s) 203, 336, 466
GluI GCNGC 3 cut(s) 203, 336, 466
HaeIII GGCC 2 cut(s) 198, 432
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 218, 376, 446
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 248, 480
Hpy8I GTNNAC 1 cut(s) 378
Hpy99I CGWCG 1 cut(s) 385
HpyCH4III ACNGT 2 cut(s) 185, 408
HpyCH4IV ACGT 3 cut(s) 240, 380, 390
HpyCH4V TGCA 4 cut(s) 153, 162, 367, 421
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 335, 418, 448
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 3 cut(s) 240, 380, 390
Hsp92II CATG 3 cut(s) 218, 376, 446
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 3 cut(s) 105, 348, 473
Lsp1109I GCAGC 2 cut(s) 214, 452
LweI GCATC 1 cut(s) 200
MaeII ACGT 3 cut(s) 240, 380, 390
MaeIII GTNAC 1 cut(s) 386
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 38
MluCI AATT 1 cut(s) 228
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 3 cut(s) 340, 423, 467
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 343
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 159, 335, 418, 448
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 218, 376, 446
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 2 cut(s) 376, 446
PaqCI CACCTGC 1 cut(s) 167
PciI ACATGT 1 cut(s) 372
PflFI GACNNNGTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 311
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 3 cut(s) 204, 337, 467
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PscI ACATGT 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 465
RsaI GTAC 6 cut(s) 13, 149, 182, 377, 393, 399
RsaNI GTAC 6 cut(s) 12, 148, 181, 376, 392, 398
RseI CAYNNNNRTG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 3 cut(s) 203, 336, 466
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 20
SfaNI GCATC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 343
Sse9I AATT 1 cut(s) 228
SsiI CCGC 3 cut(s) 200, 208, 336
SspI AATATT 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 185, 408
TaiI ACGT 3 cut(s) 243, 383, 393
TaqI TCGA 1 cut(s) 438
TasI AATT 1 cut(s) 228
TatI WGTACW 3 cut(s) 11, 180, 375
TauI GCSGC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 202, 465
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 68, 72, 291
Tth111I GACNNNGTC 1 cut(s) 254
Van91I CCANNNNNTGG 1 cut(s) 311
XapI RAATTY 1 cut(s) 228
XceI RCATGY 2 cut(s) 376, 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.