Rh3DG338600

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014646
Physical Location & Seq
Reverse (-)
37816750 .. 37834393
17644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG338600.1

Sequence Viewer

Length: 1035 bp
ATGGCTCCTTCAAAATCTAGGGCTGCCACTAGAGCAAGGCAGAATATTATTAATGCATTGAAAGTGACAAGAGCGAGATCTGCACCAGAACTAGCATCTTCTGCCGTGTCAAATGCATCAGAAAACAAGCCATCACCAAAGAGAGCAACGACATCGCTAAGGGTCAGCAAGTCATTGACGAAGCATAAGAAGAAAAAGTCATCTAAGGCATCCAGCCCAGAAAAAAGTGGCTTAAAGTTGCTGAAGCGTGGTTGTGTTACAATGCACAGGATTGTGAGAAGGAAAATTCTTGGGTGTGCATTACAAAAGATTGAGGACGCTGCTGGTATCTTTGCAAAGAAGCGGTTAGACTTAGTGGATGACATTGTGAAGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCTGATGGAAGAACCAGCTGCTGCAGTAGTTCATGAGAAGGCTGTTGAGTTGGTTGAAGTTACACAGCAGAGACAACCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAAAAGGCAAGTAGGCATTCCTGAAGAGGAGAATATTGACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGCAAGGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACAGGAAGCATTATCTATTTAAGTCAGACATTCATGCATTGTGTACAATGACTGAACTATCAGGTGGAGTTGAAGAAGCAGTCGTCCAGCAAACCAGAATGAATGAAAAGCCAGAATGGATGGAAAGATTTTTGGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCCATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTATGGCATCAGGCCCGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTACACAAATTTTGGTACATGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

344

Amino Acids

38.81

Weight (kDa)

9.51

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 884
AciI CCGC 3 cut(s) 343, 917, 925
AcsI RAATTY 3 cut(s) 285, 945, 1014
AcuI CTGAAG 2 cut(s) 263, 552
AfaI GTAC 6 cut(s) 396, 715, 866, 899, 1009, 1023
AfiI CCNNNNNNNGG 2 cut(s) 845, 846
AflIII ACRYGT 1 cut(s) 955
AgeI ACCGGT 1 cut(s) 861
AgsI TTSAA 8 cut(s) 12, 61, 458, 502, 586, 643, 743, 859
AluBI AGCT 4 cut(s) 419, 559, 825, 833
AluI AGCT 4 cut(s) 419, 559, 825, 833
Alw26I GTCTC 1 cut(s) 466
AlwNI CAGNNNCTG 2 cut(s) 403, 422
AoxI GGCC 1 cut(s) 913
ApeKI GCWGC 5 cut(s) 23, 320, 419, 422, 919
ApoI RAATTY 3 cut(s) 285, 945, 1014
AseI ATTAAT 1 cut(s) 51
AsiGI ACCGGT 1 cut(s) 861
AspS9I GGNCC 1 cut(s) 914
AsuHPI GGTGA 1 cut(s) 126
BbvI GCAGC 5 cut(s) 10, 307, 406, 409, 931
BccI CCATC 3 cut(s) 139, 400, 784
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 3 cut(s) 18, 30, 92
BfmI CTRYAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 884
BglII AGATCT 1 cut(s) 77
BisI GCNGC 5 cut(s) 24, 321, 420, 423, 920
BlsI GCNGC 5 cut(s) 25, 322, 421, 424, 921
BmcAI AGTACT 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 914
BmiI GGNNCC 2 cut(s) 6, 851
BmsI GCATC 5 cut(s) 104, 125, 218, 675, 917
Bpu10I CCTNAGC 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 861
Bsc4I CCNNNNNNNGG 2 cut(s) 845, 846
Bse118I RCCGGY 1 cut(s) 861
Bse1I ACTGG 3 cut(s) 489, 853, 895
BseGI GGATG 5 cut(s) 209, 364, 795, 835, 997
BseLI CCNNNNNNNGG 2 cut(s) 845, 846
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 3 cut(s) 489, 853, 895
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 5 cut(s) 10, 307, 406, 409, 931
BsgI GTGCAG 3 cut(s) 66, 561, 853
BshFI GGCC 1 cut(s) 915
BshTI ACCGGT 1 cut(s) 861
BsiSI CCGG 1 cut(s) 862
BslFI GGGAC 1 cut(s) 623
BslI CCNNNNNNNGG 2 cut(s) 845, 846
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 623
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 1 cut(s) 915
Bsp1407I TGTACA 3 cut(s) 394, 713, 1007
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 3 cut(s) 343, 917, 925
BspANI GGCC 1 cut(s) 915
BspCNI CTCAG 1 cut(s) 899
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 6, 851
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 861
BsrGI TGTACA 3 cut(s) 394, 713, 1007
BsrI ACTGG 3 cut(s) 489, 853, 895
BssAI RCCGGY 1 cut(s) 861
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 902, 1007
Bst6I CTCTTC 2 cut(s) 500, 528
BstAPI GCANNNNNTGC 2 cut(s) 101, 876
BstAUI TGTACA 3 cut(s) 394, 713, 1007
BstC8I GCNNGC 1 cut(s) 917
BstDEI CTNAG 4 cut(s) 158, 204, 352, 886
BstF5I GGATG 5 cut(s) 209, 364, 795, 835, 997
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 4 cut(s) 32, 80, 101, 876
BstNSI RCATGY 1 cut(s) 1028
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 5 cut(s) 10, 307, 406, 409, 931
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 1 cut(s) 915
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 5 cut(s) 209, 364, 795, 835, 997
BveI ACCTGC 1 cut(s) 884
Cac8I GCNNGC 1 cut(s) 917
CaiI CAGNNNCTG 2 cut(s) 403, 422
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 861
Cfr13I GGNCC 1 cut(s) 914
CseI GACGC 2 cut(s) 326, 977
Csp6I GTAC 6 cut(s) 395, 714, 865, 898, 1008, 1022
CspAI ACCGGT 1 cut(s) 861
CviAII CATG 5 cut(s) 434, 550, 704, 932, 1025
CviQI GTAC 6 cut(s) 395, 714, 865, 898, 1008, 1022
DdeI CTNAG 4 cut(s) 158, 204, 352, 886
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 500, 528
EarI CTCTTC 2 cut(s) 500, 528
Eco57I CTGAAG 2 cut(s) 263, 552
EcoT22I ATGCAT 3 cut(s) 58, 118, 709
FaeI CATG 5 cut(s) 437, 553, 707, 935, 1028
FaiI YATR 8 cut(s) 186, 435, 551, 705, 905, 933, 938, 1026
FaqI GGGAC 1 cut(s) 623
FatI CATG 5 cut(s) 433, 549, 703, 931, 1024
FauI CCCGC 1 cut(s) 924
Fnu4HI GCNGC 5 cut(s) 24, 321, 420, 423, 920
FokI GGATG 5 cut(s) 196, 371, 802, 822, 1004
Fsp4HI GCNGC 5 cut(s) 24, 321, 420, 423, 920
FspBI CTAG 3 cut(s) 18, 30, 92
GluI GCNGC 5 cut(s) 24, 321, 420, 423, 920
HaeIII GGCC 1 cut(s) 915
HapII CCGG 1 cut(s) 862
HgaI GACGC 2 cut(s) 326, 977
Hin1II CATG 5 cut(s) 437, 553, 707, 935, 1028
HpaII CCGG 1 cut(s) 862
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 714, 1010
Hpy188I TCNGA 4 cut(s) 121, 405, 697, 985
Hpy188III TCNNGA 3 cut(s) 434, 530, 965
Hpy8I GTNNAC 2 cut(s) 714, 1010
HpyAV CCTTC 5 cut(s) 18, 273, 364, 433, 649
HpyCH4III ACNGT 2 cut(s) 902, 1007
HpyCH4IV ACGT 1 cut(s) 957
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 80, 101, 876
HpyF3I CTNAG 4 cut(s) 158, 204, 352, 886
HpySE526I ACGT 1 cut(s) 957
Hsp92II CATG 5 cut(s) 437, 553, 707, 935, 1028
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 10, 822
Lsp1109I GCAGC 5 cut(s) 10, 307, 406, 409, 931
LweI GCATC 5 cut(s) 104, 125, 218, 675, 917
MaeI CTAG 3 cut(s) 18, 30, 92
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 3 cut(s) 64, 256, 460
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MflI RGATCY 1 cut(s) 77
MluCI AATT 6 cut(s) 285, 613, 643, 945, 1014, 1030
MnlI CCTC 4 cut(s) 307, 501, 529, 621
Mph1103I ATGCAT 3 cut(s) 58, 118, 709
MseI TTAA 5 cut(s) 51, 233, 690, 941, 1033
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 862
Mva1269I GAATGC 1 cut(s) 525
MwoI GCNNNNNNNGC 4 cut(s) 32, 80, 101, 876
NdeII GATC 1 cut(s) 77
NlaIII CATG 5 cut(s) 437, 553, 707, 935, 1028
NlaIV GGNNCC 2 cut(s) 6, 851
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 3 cut(s) 58, 118, 709
NspI RCATGY 1 cut(s) 1028
PagI TCATGA 1 cut(s) 433
PaqCI CACCTGC 1 cut(s) 884
PctI GAATGC 1 cut(s) 525
PflFI GACNNNGTC 1 cut(s) 971
PinAI ACCGGT 1 cut(s) 861
PkrI GCNGC 5 cut(s) 25, 322, 421, 424, 921
PshBI ATTAAT 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 6, 851
PspPI GGNCC 1 cut(s) 914
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 2 cut(s) 403, 422
PsuI RGATCY 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 971
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 6 cut(s) 396, 715, 866, 899, 1009, 1023
RsaNI GTAC 6 cut(s) 395, 714, 865, 898, 1008, 1022
SaqAI TTAA 5 cut(s) 51, 233, 690, 941, 1033
SatI GCNGC 5 cut(s) 24, 321, 420, 423, 920
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 914
ScaI AGTACT 1 cut(s) 899
SfaNI GCATC 5 cut(s) 104, 125, 218, 675, 917
SfcI CTRYAG 1 cut(s) 423
Sse9I AATT 6 cut(s) 285, 613, 643, 945, 1014, 1030
SsiI CCGC 3 cut(s) 343, 917, 925
SspI AATATT 3 cut(s) 46, 544, 998
SspMI CTAG 3 cut(s) 18, 30, 92
TaaI ACNGT 2 cut(s) 902, 1007
TaiI ACGT 1 cut(s) 960
TaqI TCGA 1 cut(s) 669
TasI AATT 6 cut(s) 285, 613, 643, 945, 1014, 1030
TatI WGTACW 4 cut(s) 394, 713, 897, 1007
Tru1I TTAA 5 cut(s) 51, 233, 690, 941, 1033
Tru9I TTAA 5 cut(s) 51, 233, 690, 941, 1033
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 5 cut(s) 23, 320, 419, 422, 919
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 6 cut(s) 422, 566, 692, 785, 789, 1008
Tth111I GACNNNGTC 1 cut(s) 971
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 3 cut(s) 285, 945, 1014
XceI RCATGY 1 cut(s) 1028
XspI CTAG 3 cut(s) 18, 30, 92
ZrmI AGTACT 1 cut(s) 899
Zsp2I ATGCAT 3 cut(s) 58, 118, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.