Rw3G026760

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014646
Physical Location & Seq
Reverse (-)
36933000 .. 36935028
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026760.1

Sequence Viewer

Length: 648 bp
ATGAGTACTACTACTAGTGAGGCATCGATGAGTTCATATTCTCCGTCTTCTAATACGTCAATGGAACAGGTTGAAGAAGCAGTCGTCCAGCAAACCAGAATGAATGAAAAGCCAGAATGGATGGAAAGATTTTTAGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCCATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTATGGCATCAGGCCCGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTACACAAATTTTGCCTTACAAGTCCAACCAATCGCTGGTTATAGCATTGAAGCCTCTGCCGCATTTGGGTGGAGCAAGCAAGTATTCCTGCAAAACATGTACACGTCGGGTGACGTACCCGTACTCATACTGTTGCCTCCATTGCAAGGTGGTGGCCTTATCGAGCATGTCAAGCGTTTCCTCATCAGCTGCTCCATTGCTTCGTGACCAGACTAGTCCCAACAAGCAAAAGAAAAAGAGGGTTGCCGCCAAACCCCAGAGCTCACTTCACAGACGAAAGGGAAAACCTTTCAGAGCTCCCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

215

Amino Acids

24.25

Weight (kDa)

9.19

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 95 - 163 4.3e-15 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 373
AciI CCGC 4 cut(s) 248, 256, 398, 585
AcsI RAATTY 2 cut(s) 276, 345
AfaI GTAC 7 cut(s) 7, 197, 230, 340, 439, 455, 461
AfiI CCNNNNNNNGG 5 cut(s) 176, 177, 373, 404, 484
AflIII ACRYGT 3 cut(s) 286, 434, 440
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 74, 190, 388
AhlI ACTAGT 2 cut(s) 14, 551
AjiI CACGTC 1 cut(s) 443
AluBI AGCT 5 cut(s) 156, 164, 527, 600, 635
AluI AGCT 5 cut(s) 156, 164, 527, 600, 635
Alw21I GWGCWC 2 cut(s) 602, 637
AoxI GGCC 2 cut(s) 244, 492
ApeKI GCWGC 2 cut(s) 250, 527
ApoI RAATTY 2 cut(s) 276, 345
AsiGI ACCGGT 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 460
BanII GRGCYC 2 cut(s) 602, 637
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 2 cut(s) 602, 637
BbvI GCAGC 2 cut(s) 262, 514
BccI CCATC 1 cut(s) 115
BcuI ACTAGT 2 cut(s) 14, 551
BfaI CTAG 2 cut(s) 15, 552
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 4 cut(s) 251, 398, 528, 585
BlsI GCNGC 4 cut(s) 252, 399, 529, 586
BmcAI AGTACT 2 cut(s) 7, 230
BmgBI CACGTC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 182
BmsI GCATC 2 cut(s) 32, 248
BpiI GAAGAC 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 177, 373, 404, 484
Bse118I RCCGGY 1 cut(s) 192
Bse1I ACTGG 2 cut(s) 184, 226
Bse3DI GCAATG 2 cut(s) 478, 533
BseCI ATCGAT 1 cut(s) 26
BseGI GGATG 3 cut(s) 126, 166, 328
BseLI CCNNNNNNNGG 5 cut(s) 176, 177, 373, 404, 484
BseMI GCAATG 2 cut(s) 478, 533
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 184, 226
BseXI GCAGC 2 cut(s) 262, 514
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 2 cut(s) 246, 494
BshTI ACCGGT 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 602, 637
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 5 cut(s) 176, 177, 373, 404, 484
BsmFI GGGAC 1 cut(s) 540
BsnI GGCC 2 cut(s) 246, 494
Bsp1286I GDGCHC 2 cut(s) 602, 637
Bsp1407I TGTACA 2 cut(s) 338, 437
BspACI CCGC 4 cut(s) 248, 256, 398, 585
BspANI GGCC 2 cut(s) 246, 494
BspCNI CTCAG 1 cut(s) 230
BspDI ATCGAT 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 478, 533
BsrFI RCCGGY 1 cut(s) 192
BsrGI TGTACA 2 cut(s) 338, 437
BsrI ACTGG 2 cut(s) 184, 226
BssAI RCCGGY 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 233, 338, 470
BstAPI GCANNNNNTGC 1 cut(s) 207
BstAUI TGTACA 2 cut(s) 338, 437
BstC8I GCNNGC 2 cut(s) 248, 415
BstDEI CTNAG 1 cut(s) 217
BstF5I GGATG 3 cut(s) 126, 166, 328
BstMWI GCNNNNNNNGC 4 cut(s) 207, 397, 480, 510
BstNSI RCATGY 2 cut(s) 438, 508
BstV1I GCAGC 2 cut(s) 262, 514
BstV2I GAAGAC 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 2 cut(s) 246, 494
BsuTUI ATCGAT 1 cut(s) 26
BtrI CACGTC 1 cut(s) 443
BtsCI GGATG 3 cut(s) 126, 166, 328
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 2 cut(s) 248, 415
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 26
CseI GACGC 1 cut(s) 308
Csp6I GTAC 7 cut(s) 6, 196, 229, 339, 438, 454, 460
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 3 cut(s) 263, 435, 505
CviJI RGCY 9 cut(s) 112, 156, 164, 246, 391, 494, 527, 600, 635
CviKI_1 RGCY 9 cut(s) 112, 156, 164, 246, 391, 494, 527, 600, 635
CviQI GTAC 7 cut(s) 6, 196, 229, 339, 438, 454, 460
DdeI CTNAG 1 cut(s) 217
Ecl136II GAGCTC 2 cut(s) 600, 635
Eco24I GRGCYC 2 cut(s) 602, 637
Eco53kI GAGCTC 2 cut(s) 600, 635
EcoICRI GAGCTC 2 cut(s) 600, 635
EcoT38I GRGCYC 2 cut(s) 602, 637
FaeI CATG 3 cut(s) 266, 438, 508
FaiI YATR 8 cut(s) 37, 236, 264, 269, 380, 436, 466, 506
FaqI GGGAC 1 cut(s) 540
FatI CATG 3 cut(s) 262, 434, 504
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 251, 398, 528, 585
FokI GGATG 3 cut(s) 133, 153, 335
FriOI GRGCYC 2 cut(s) 602, 637
Fsp4HI GCNGC 4 cut(s) 251, 398, 528, 585
FspBI CTAG 2 cut(s) 15, 552
GluI GCNGC 4 cut(s) 251, 398, 528, 585
HaeIII GGCC 2 cut(s) 246, 494
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 308
Hin1II CATG 3 cut(s) 266, 438, 508
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 2 cut(s) 341, 440
Hpy188I TCNGA 3 cut(s) 316, 632, 647
Hpy188III TCNNGA 2 cut(s) 296, 542
Hpy8I GTNNAC 2 cut(s) 341, 440
Hpy99I CGWCG 1 cut(s) 447
HpyCH4III ACNGT 3 cut(s) 233, 338, 470
HpyCH4IV ACGT 4 cut(s) 56, 288, 442, 452
HpyCH4V TGCA 4 cut(s) 201, 210, 429, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 397, 480, 510
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 4 cut(s) 56, 288, 442, 452
Hsp92II CATG 3 cut(s) 266, 438, 508
LmnI GCTCC 4 cut(s) 153, 410, 535, 640
Lsp1109I GCAGC 2 cut(s) 262, 514
LweI GCATC 2 cut(s) 32, 248
MaeI CTAG 2 cut(s) 15, 552
MaeII ACGT 4 cut(s) 56, 288, 442, 452
MaeIII GTNAC 2 cut(s) 448, 542
MboII GAAGA 2 cut(s) 39, 86
MhlI GDGCHC 2 cut(s) 602, 637
MluCI AATT 2 cut(s) 276, 345
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 5 cut(s) 13, 402, 485, 529, 570
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 193
MwoI GCNNNNNNNGC 4 cut(s) 207, 397, 480, 510
NlaIII CATG 3 cut(s) 266, 438, 508
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 448, 542
NspI RCATGY 2 cut(s) 438, 508
PaqCI CACCTGC 1 cut(s) 215
PciI ACATGT 1 cut(s) 434
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 373
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 4 cut(s) 252, 399, 529, 586
PscI ACATGT 1 cut(s) 434
Psp124BI GAGCTC 2 cut(s) 602, 637
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 245
PsyI GACNNNGTC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 7 cut(s) 7, 197, 230, 340, 439, 455, 461
RsaNI GTAC 7 cut(s) 6, 196, 229, 339, 438, 454, 460
RseI CAYNNNNRTG 1 cut(s) 405
SacI GAGCTC 2 cut(s) 602, 637
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 4 cut(s) 251, 398, 528, 585
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 2 cut(s) 7, 230
SduI GDGCHC 2 cut(s) 602, 637
SfaNI GCATC 2 cut(s) 32, 248
SmiMI CAYNNNNRTG 1 cut(s) 405
SpeI ACTAGT 2 cut(s) 14, 551
Sse9I AATT 2 cut(s) 276, 345
SsiI CCGC 4 cut(s) 248, 256, 398, 585
SspI AATATT 1 cut(s) 329
SspMI CTAG 2 cut(s) 15, 552
SstI GAGCTC 2 cut(s) 602, 637
TaaI ACNGT 3 cut(s) 233, 338, 470
TaiI ACGT 4 cut(s) 59, 291, 445, 455
TaqI TCGA 2 cut(s) 26, 500
TasI AATT 2 cut(s) 276, 345
TatI WGTACW 4 cut(s) 5, 228, 338, 437
TauI GCSGC 2 cut(s) 400, 587
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 2 cut(s) 448, 542
TseI GCWGC 2 cut(s) 250, 527
Tsp45I GTSAC 2 cut(s) 448, 542
TspDTI ATGAA 4 cut(s) 24, 116, 120, 339
TspGWI ACGGA 1 cut(s) 33
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 373
XapI RAATTY 2 cut(s) 276, 345
XceI RCATGY 2 cut(s) 438, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XspI CTAG 2 cut(s) 15, 552
ZrmI AGTACT 2 cut(s) 7, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.