RLG00000022780

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014646
Physical Location & Seq
Forward (+)
12125512 .. 12126335
824 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022780

Sequence Viewer

Length: 549 bp
ATGAATGAAAAGCCAGAATGGATGGAGAGATTTTTAGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCTATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTCTGGCATCAGGCCGGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTACACAAATTTTGCCTTACAAGTCCAACCAATCGCTGGTTATAGCATTGAAGCCTCTGCCGCATTTGGGTGGAGCAAGCAAGTATTCCTGCAAAACATGTACACGACGGGTGACGTACCCGTACTCATACTGTTGCCTCCATTGCAAGGTGGTCGCCTTATCGAGCATGTCAAACGTTTCCTCATCAGCTGATCCATTGCTTCGTGACCAGACTAGTCCCAACAAGCAAAAGAAAAAGAGGGTAGCCGCCAAACCCCAGAGCTCACTTCACAGACGAAAGGGAAAACCTTTCAGAGCGCCCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

183

Amino Acids

20.81

Weight (kDa)

9.42

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 62 - 130 3.1e-15 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 274
AciI CCGC 3 cut(s) 157, 299, 486
AclI AACGTT 1 cut(s) 414
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 2 cut(s) 177, 246
AfaI GTAC 6 cut(s) 98, 131, 241, 340, 356, 362
AfiI CCNNNNNNNGG 4 cut(s) 77, 274, 305, 385
AflIII ACRYGT 2 cut(s) 187, 335
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 91, 289
AhlI ACTAGT 1 cut(s) 452
AluBI AGCT 4 cut(s) 57, 65, 428, 501
AluI AGCT 4 cut(s) 57, 65, 428, 501
Alw21I GWGCWC 1 cut(s) 503
AlwI GGATC 1 cut(s) 425
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 2 cut(s) 177, 246
AsiGI ACCGGT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 361
BanII GRGCYC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 3 cut(s) 152, 299, 486
BlsI GCNGC 3 cut(s) 153, 300, 487
BmcAI AGTACT 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 274, 305, 385
Bse118I RCCGGY 2 cut(s) 93, 147
Bse1I ACTGG 2 cut(s) 85, 127
Bse3DI GCAATG 2 cut(s) 379, 434
BseGI GGATG 3 cut(s) 27, 67, 229
BseLI CCNNNNNNNGG 4 cut(s) 77, 274, 305, 385
BseMI GCAATG 2 cut(s) 379, 434
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 85, 127
BseXI GCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 1 cut(s) 147
BshTI ACCGGT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 2 cut(s) 94, 148
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 4 cut(s) 77, 274, 305, 385
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 503
Bsp1407I TGTACA 2 cut(s) 239, 338
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 3 cut(s) 157, 299, 486
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 83
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 379, 434
BsrFI RCCGGY 2 cut(s) 93, 147
BsrGI TGTACA 2 cut(s) 239, 338
BsrI ACTGG 2 cut(s) 85, 127
BssAI RCCGGY 2 cut(s) 93, 147
BssMI GATC 1 cut(s) 430
Bst4CI ACNGT 3 cut(s) 134, 239, 371
BstAPI GCANNNNNTGC 1 cut(s) 108
BstAUI TGTACA 2 cut(s) 239, 338
BstC8I GCNNGC 2 cut(s) 149, 316
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 27, 67, 229
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 1 cut(s) 433
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 3 cut(s) 108, 298, 381
BstNSI RCATGY 2 cut(s) 339, 409
BstV1I GCAGC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 3 cut(s) 27, 67, 229
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 149, 316
CfoI GCGC 1 cut(s) 538
Cfr10I RCCGGY 2 cut(s) 93, 147
CseI GACGC 1 cut(s) 209
Csp6I GTAC 6 cut(s) 97, 130, 240, 339, 355, 361
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 3 cut(s) 164, 336, 406
CviJI RGCY 8 cut(s) 13, 57, 65, 147, 292, 428, 485, 501
CviKI_1 RGCY 8 cut(s) 13, 57, 65, 147, 292, 428, 485, 501
CviQI GTAC 6 cut(s) 97, 130, 240, 339, 355, 361
DdeI CTNAG 1 cut(s) 118
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 503
Eco53kI GAGCTC 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 503
FaeI CATG 3 cut(s) 167, 339, 409
FaiI YATR 6 cut(s) 165, 170, 281, 337, 367, 407
FaqI GGGAC 1 cut(s) 441
FatI CATG 3 cut(s) 163, 335, 405
Fnu4HI GCNGC 3 cut(s) 152, 299, 486
FokI GGATG 3 cut(s) 34, 54, 236
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 152, 299, 486
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 537
GluI GCNGC 3 cut(s) 152, 299, 486
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 1 cut(s) 147
HapII CCGG 2 cut(s) 94, 148
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 538
Hin1II CATG 3 cut(s) 167, 339, 409
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HpaII CCGG 2 cut(s) 94, 148
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 242, 341
Hpy188I TCNGA 3 cut(s) 217, 533, 548
Hpy188III TCNNGA 2 cut(s) 197, 443
Hpy8I GTNNAC 2 cut(s) 242, 341
Hpy99I CGWCG 1 cut(s) 348
HpyCH4III ACNGT 3 cut(s) 134, 239, 371
HpyCH4IV ACGT 3 cut(s) 189, 353, 414
HpyCH4V TGCA 4 cut(s) 102, 111, 330, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 298, 381
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 3 cut(s) 189, 353, 414
Hsp92II CATG 3 cut(s) 167, 339, 409
HspAI GCGC 1 cut(s) 536
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 2 cut(s) 54, 311
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 453
MaeII ACGT 3 cut(s) 189, 353, 414
MaeIII GTNAC 2 cut(s) 349, 443
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 2 cut(s) 177, 246
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 4 cut(s) 303, 386, 430, 471
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 2 cut(s) 94, 148
MwoI GCNNNNNNNGC 3 cut(s) 108, 298, 381
NaeI GCCGGC 1 cut(s) 149
NdeII GATC 1 cut(s) 430
NgoMIV GCCGGC 1 cut(s) 147
NlaIII CATG 3 cut(s) 167, 339, 409
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 2 cut(s) 349, 443
NspI RCATGY 2 cut(s) 339, 409
PaqCI CACCTGC 1 cut(s) 116
PciI ACATGT 1 cut(s) 335
PdiI GCCGGC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 3 cut(s) 153, 300, 487
PscI ACATGT 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 503
Psp1406I AACGTT 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 6 cut(s) 98, 131, 241, 340, 356, 362
RsaNI GTAC 6 cut(s) 97, 130, 240, 339, 355, 361
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 503
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 3 cut(s) 152, 299, 486
Sau3AI GATC 1 cut(s) 430
ScaI AGTACT 1 cut(s) 131
SduI GDGCHC 1 cut(s) 503
SfaNI GCATC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 306
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 2 cut(s) 177, 246
SsiI CCGC 3 cut(s) 157, 299, 486
SspI AATATT 1 cut(s) 230
SspMI CTAG 1 cut(s) 453
SstI GAGCTC 1 cut(s) 503
TaaI ACNGT 3 cut(s) 134, 239, 371
TaiI ACGT 3 cut(s) 192, 356, 417
TaqI TCGA 1 cut(s) 401
TasI AATT 2 cut(s) 177, 246
TatI WGTACW 3 cut(s) 129, 239, 338
TauI GCSGC 2 cut(s) 301, 488
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseFI GTSAC 2 cut(s) 349, 443
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 2 cut(s) 349, 443
TspDTI ATGAA 3 cut(s) 17, 21, 240
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 2 cut(s) 177, 246
XceI RCATGY 2 cut(s) 339, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 1 cut(s) 453
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.