MD17G1254800.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014646
Physical Location & Seq
Forward (+)
31072591 .. 31073131
541 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1254800.v1.1.491

Sequence Viewer

Length: 444 bp
ATGAATGGAAATCAAAAGCCCGAGTGGCTCGATTCATTTATAAAAATAATCTTTTTCGATGCCTGTCCAGATCATCCTGTAGACAAGAATGAAAAGAACAGATACTTGAATGAAAGGAACAGATACTGTGTTGATTGTAACACAGCAGCCTGCCAGTACTGCATTGATTCTGGTGATCATCGACATCACCGAACATTGCAAATTTACCACTATATCTATCAGGGTGCTGTCCCACTTGATACCATGAAAAAGCATATGGATTGTTCCCAAATTCAGCCATATAGATCCAACAAGAAATTGGTTCTACCTCAGACTCCACTTCCCCGCTCTGGATCAAAAAATGACTCTGCCAATGATGAAGGGTGCTGTGAGATTTGTAAAAGAACATTACGTGAACCAGATCGTCATCGCTATTGCTGTATTTCTTGCAAGGAAAGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

148

Amino Acids

17.23

Weight (kDa)

8.24

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 71 - 144 3.1e-16 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 327
AccI GTMKAC 1 cut(s) 81
AciI CCGC 1 cut(s) 325
AclWI GGATC 2 cut(s) 279, 340
AcsI RAATTY 2 cut(s) 201, 270
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 109
AlwI GGATC 2 cut(s) 279, 340
AlwNI CAGNNNCTG 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 201, 270
AsuHPI GGTGA 2 cut(s) 179, 185
AvaI CYCGRG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 158
BclI TGATCA 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmcAI AGTACT 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 20
BmsI GCATC 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 405
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 5 cut(s) 70, 175, 284, 332, 400
BspACI CCGC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 322
BspPI GGATC 2 cut(s) 279, 340
BsrBI CCGCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 1 cut(s) 154
BssMI GATC 5 cut(s) 70, 175, 284, 332, 400
Bst4CI ACNGT 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 5 cut(s) 73, 178, 287, 335, 403
BstMBI GATC 5 cut(s) 70, 175, 284, 332, 400
BstMWI GCNNNNNNNGC 2 cut(s) 25, 159
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 126
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 19, 28, 149, 277
CviKI_1 RGCY 4 cut(s) 19, 28, 149, 277
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 309
DpnI GATC 5 cut(s) 72, 177, 286, 334, 402
DpnII GATC 5 cut(s) 70, 175, 284, 332, 400
Eco88I CYCGRG 1 cut(s) 20
FaeI CATG 1 cut(s) 247
FaiI YATR 7 cut(s) 41, 213, 245, 255, 257, 280, 282
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 243
FauI CCCGC 1 cut(s) 332
FauNDI CATATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 247
HinfI GANTC 4 cut(s) 32, 167, 313, 344
HphI GGTGA 2 cut(s) 179, 185
Hpy166II GTNNAC 2 cut(s) 82, 395
Hpy188I TCNGA 2 cut(s) 312, 443
Hpy188III TCNNGA 2 cut(s) 68, 330
Hpy8I GTNNAC 2 cut(s) 82, 395
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 3 cut(s) 162, 199, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 159
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 5 cut(s) 70, 175, 284, 332, 400
LpnPI CCDG 9 cut(s) 76, 81, 90, 156, 163, 167, 206, 315, 411
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 49
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 137
MalI GATC 5 cut(s) 72, 177, 286, 334, 402
MbiI CCGCTC 1 cut(s) 327
MboI GATC 5 cut(s) 70, 175, 284, 332, 400
MflI RGATCY 1 cut(s) 284
MluCI AATT 3 cut(s) 201, 270, 296
MlyI GAGTC 2 cut(s) 307, 338
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 25, 159
NdeI CATATG 1 cut(s) 255
NdeII GATC 5 cut(s) 70, 175, 284, 332, 400
NlaIII CATG 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 2 cut(s) 32, 167
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 2 cut(s) 307, 338
PpsI GAGTC 2 cut(s) 307, 338
Ppu21I YACGTR 1 cut(s) 392
PsiI TTATAA 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 5 cut(s) 70, 175, 284, 332, 400
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 2 cut(s) 307, 338
SetI ASST 2 cut(s) 310, 394
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 78
Sse9I AATT 3 cut(s) 201, 270, 296
SsiI CCGC 1 cut(s) 325
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 394
TaqI TCGA 3 cut(s) 30, 57, 181
TasI AATT 3 cut(s) 201, 270, 296
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 2 cut(s) 32, 167
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 6 cut(s) 17, 24, 105, 126, 260, 372
XapI RAATTY 2 cut(s) 201, 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.