Rh3BG312700

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014646
Physical Location & Seq
Reverse (-)
31765201 .. 31771220
6020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG312700.1

Sequence Viewer

Length: 696 bp
ATGGATCAATGTAAATTGCAGGTTTCAAAAGCAGTAGTCCAGCAGGGAAACCATCAAAACCCAGAATGGATTGAGGCATTTTTAAAAGCAAGCTTCTTTGTTGGCTGTGCAGCTCATCCTTATATAAGCAACCACTTGAACAGGTACTGCGTCACCTGTCAAATCTCGGGTTGTCACTACTGCATGAATTCAGGCCATCCGCTTGGCGATCATGAGACATTAAAAATTTACATACATGTATATCGGGATGTAGTTTTACTCTCTGAAATGGACAAACACTTGGACTGCAGGCAAATTCTGCCTTATAAGTCCAGCCACTCGCTGGTTATAACATTGAAGTCTCTCCCGCATTTTGGTGGATTAAGCAAATTCTCCTGCCAGACTTGCGGCAGACGAGTAAATCCCCAGTACTCGTACTGCTGCCTCCATTGCAAGGTGGCAGCAATGTCGACCAAGTCAAGTGGTGCCTCATCATCAGCTCCTCCATTTCTTGGCGACCAGACTACTCCCAACAATAGGGAAAATAAGAAGAGGGTTGCCAAACCCGAGAACTCACTTCACAGACCTAAAGGGAAAACCCTTCAGAGCTCCACTTTTATGAAGGCTAATTCGATCCTTTTGAAATGGGACTTGTCCAAACTCCAAAGCAACAAAGAGAATGAGGGCACTAGTGTTAGATCGTGCCTATCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

231

Amino Acids

25.88

Weight (kDa)

9.22

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 79 - 146 9.8e-13 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 306, 329
Acc36I ACCTGC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 2 cut(s) 322, 491
AccI GTMKAC 1 cut(s) 449
AciI CCGC 3 cut(s) 200, 347, 387
AclWI GGATC 2 cut(s) 12, 607
AcsI RAATTY 4 cut(s) 187, 225, 294, 368
AcuI CTGAAG 1 cut(s) 566
AfaI GTAC 3 cut(s) 146, 410, 416
AfiI CCNNNNNNNGG 5 cut(s) 322, 353, 433, 491, 516
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 4 cut(s) 27, 139, 337, 622
AhlI ACTAGT 1 cut(s) 668
AluBI AGCT 4 cut(s) 93, 113, 479, 588
AluI AGCT 4 cut(s) 93, 113, 479, 588
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 2 cut(s) 209, 345
AlwI GGATC 2 cut(s) 12, 607
AlwNI CAGNNNCTG 1 cut(s) 147
Ama87I CYCGRG 2 cut(s) 166, 545
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 110, 420, 440
ApoI RAATTY 4 cut(s) 187, 225, 294, 368
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 2 cut(s) 166, 545
BaeGI GKGCMC 1 cut(s) 668
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 3 cut(s) 122, 407, 452
BccI CCATC 2 cut(s) 60, 204
BcgI CGANNNNNNTGC 2 cut(s) 429, 463
BcoDI GTCTC 2 cut(s) 209, 345
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 1 cut(s) 286
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 4 cut(s) 111, 388, 421, 441
BlsI GCNGC 4 cut(s) 112, 389, 422, 442
BmcAI AGTACT 1 cut(s) 410
BmeT110I CYCGRG 2 cut(s) 166, 545
BmiI GGNNCC 1 cut(s) 466
BmrI ACTGGG 1 cut(s) 400
BmuI ACTGGG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 5 cut(s) 322, 353, 433, 491, 516
Bse1I ACTGG 1 cut(s) 406
Bse3DI GCAATG 2 cut(s) 427, 450
BseGI GGATG 3 cut(s) 115, 196, 253
BseLI CCNNNNNNNGG 5 cut(s) 322, 353, 433, 491, 516
BseMI GCAATG 2 cut(s) 427, 450
BseNI ACTGG 1 cut(s) 406
BseRI GAGGAG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 3 cut(s) 122, 407, 452
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 2 cut(s) 166, 545
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 5 cut(s) 322, 353, 433, 491, 516
BsmAI GTCTC 2 cut(s) 209, 345
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 1 cut(s) 195
BsoBI CYCGRG 2 cut(s) 166, 545
Bsp1286I GDGCHC 2 cut(s) 590, 668
Bsp143I GATC 4 cut(s) 4, 208, 612, 677
BspACI CCGC 3 cut(s) 200, 347, 387
BspANI GGCC 1 cut(s) 195
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 2 cut(s) 12, 607
BspT107I GGYRCC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 427, 450
BsrI ACTGG 1 cut(s) 406
BssMI GATC 4 cut(s) 4, 208, 612, 677
Bst6I CTCTTC 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 91, 290
BstF5I GGATG 3 cut(s) 115, 196, 253
BstKTI GATC 4 cut(s) 7, 211, 615, 680
BstMAI GTCTC 2 cut(s) 209, 345
BstMBI GATC 4 cut(s) 4, 208, 612, 677
BstMWI GCNNNNNNNGC 3 cut(s) 298, 384, 429
BstNSI RCATGY 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 668
BstV1I GCAGC 3 cut(s) 122, 407, 452
BstXI CCANNNNNNTGG 1 cut(s) 203
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 3 cut(s) 115, 196, 253
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 91, 290
CaiI CAGNNNCTG 1 cut(s) 147
CciI TCATGA 1 cut(s) 211
CseI GACGC 1 cut(s) 139
Csp6I GTAC 3 cut(s) 145, 409, 415
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 3 cut(s) 184, 212, 236
CviJI RGCY 8 cut(s) 93, 105, 113, 195, 315, 479, 588, 605
CviKI_1 RGCY 8 cut(s) 93, 105, 113, 195, 315, 479, 588, 605
CviQI GTAC 3 cut(s) 145, 409, 415
DpnI GATC 4 cut(s) 6, 210, 614, 679
DpnII GATC 4 cut(s) 4, 208, 612, 677
DraI TTTAAA 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Ecl136II GAGCTC 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 2 cut(s) 166, 545
EcoICRI GAGCTC 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 590
FaeI CATG 3 cut(s) 187, 215, 239
FaqI GGGAC 1 cut(s) 641
FatI CATG 3 cut(s) 183, 211, 235
FauI CCCGC 1 cut(s) 354
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 4 cut(s) 111, 388, 421, 441
FokI GGATG 3 cut(s) 102, 183, 260
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 4 cut(s) 111, 388, 421, 441
FspBI CTAG 1 cut(s) 669
GluI GCNGC 4 cut(s) 111, 388, 421, 441
HaeIII GGCC 1 cut(s) 195
HgaI GACGC 1 cut(s) 139
Hin1II CATG 3 cut(s) 187, 215, 239
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 91
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 2 cut(s) 265, 585
Hpy188III TCNNGA 2 cut(s) 212, 245
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 2 cut(s) 590, 595
HpyCH4V TGCA 5 cut(s) 19, 110, 183, 288, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 384, 429
Hsp92II CATG 3 cut(s) 187, 215, 239
Kzo9I GATC 4 cut(s) 4, 208, 612, 677
LmnI GCTCC 2 cut(s) 484, 593
Lsp1109I GCAGC 3 cut(s) 122, 407, 452
MaeI CTAG 1 cut(s) 669
MaeIII GTNAC 2 cut(s) 151, 173
MalI GATC 4 cut(s) 6, 210, 614, 679
MboI GATC 4 cut(s) 4, 208, 612, 677
MboII GAAGA 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 590, 668
MluCI AATT 6 cut(s) 14, 187, 225, 294, 368, 607
MnlI CCTC 6 cut(s) 67, 434, 478, 492, 525, 655
MseI TTAA 4 cut(s) 83, 221, 362, 694
MslI CAYNNNNRTG 2 cut(s) 354, 596
MwoI GCNNNNNNNGC 3 cut(s) 298, 384, 429
NdeII GATC 4 cut(s) 4, 208, 612, 677
NlaIII CATG 3 cut(s) 187, 215, 239
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 2 cut(s) 151, 173
NspI RCATGY 1 cut(s) 239
PagI TCATGA 1 cut(s) 211
PciI ACATGT 1 cut(s) 235
PflFI GACNNNGTC 1 cut(s) 454
PflMI CCANNNNNTGG 2 cut(s) 322, 491
PkrI GCNGC 4 cut(s) 112, 389, 422, 442
PscI ACATGT 1 cut(s) 235
PsiI TTATAA 2 cut(s) 306, 329
Psp124BI GAGCTC 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 466
PstI CTGCAG 1 cut(s) 290
PstNI CAGNNNCTG 1 cut(s) 147
PsyI GACNNNGTC 1 cut(s) 454
RsaI GTAC 3 cut(s) 146, 410, 416
RsaNI GTAC 3 cut(s) 145, 409, 415
RseI CAYNNNNRTG 2 cut(s) 354, 596
SacI GAGCTC 1 cut(s) 590
SalI GTCGAC 1 cut(s) 448
SaqAI TTAA 4 cut(s) 83, 221, 362, 694
SatI GCNGC 4 cut(s) 111, 388, 421, 441
Sau3AI GATC 4 cut(s) 4, 208, 612, 677
ScaI AGTACT 1 cut(s) 410
SduI GDGCHC 2 cut(s) 590, 668
SetI ASST 9 cut(s) 24, 95, 115, 146, 158, 438, 481, 568, 590
SfcI CTRYAG 1 cut(s) 286
SmiMI CAYNNNNRTG 2 cut(s) 354, 596
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 6 cut(s) 14, 187, 225, 294, 368, 607
SsiI CCGC 3 cut(s) 200, 347, 387
SspMI CTAG 1 cut(s) 669
SstI GAGCTC 1 cut(s) 590
TaqI TCGA 2 cut(s) 449, 611
TasI AATT 6 cut(s) 14, 187, 225, 294, 368, 607
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 390
Tru1I TTAA 4 cut(s) 83, 221, 362, 694
Tru9I TTAA 4 cut(s) 83, 221, 362, 694
TseFI GTSAC 2 cut(s) 151, 173
TseI GCWGC 3 cut(s) 110, 420, 440
Tsp45I GTSAC 2 cut(s) 151, 173
TspDTI ATGAA 2 cut(s) 200, 614
Tth111I GACNNNGTC 1 cut(s) 454
Van91I CCANNNNNTGG 2 cut(s) 322, 491
XapI RAATTY 4 cut(s) 187, 225, 294, 368
XceI RCATGY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 1 cut(s) 669
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.