FvH4_1g27220

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18953963 .. 18959678
5716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27220.t3

Sequence Viewer

Length: 1926 bp
ATGGAAAAGTTCTACCAAACAGATTGCGAGACCCTTTGGTGTCAGATTAAGCACAAAGAGAAGCAGATTCAACTCAAACGGAGGTGGTTGTTGGGTATTCCTCTCTCTGAATCCGAGCAGAACAAGTTTGAACACTTTGGACGTGATCTATTGCCGGAATCGTTGCTCAGGGAAGATGATATGTTCTATGAGACCGTAAAGTCTGCTGTTCAAGCAGCCTATGGAGCATGCAATGTTGAGGGAGGGAATCATGTGTTTCAAGATGATATTGTAATGCTTGACAGAAAAAGTATATCCCAAGCCTTGTCTTCATGTCTTGATGATTTGACTACTAAGGGGCTTCATCTTATAGCTACTACAATCACACGAGGTTCGGTCAAGTTTGACAAAACTCGATGGCAGATGAAAAAGATTATCCGAGAATCTCTGCAAAAGAAATTTGATGATGAATCGGGTGTTTTTAAAAAACTATGTCAACATCTTAGTGACCCAGAGAATTTCCGAGATAAGTTTGTTACAGTTTCTTCTTCCACATCACAGTTTCATCGTTGTGCTGTCAGAAAGGTACTGGATGGACTTCAGGACTTACCTGATGAAGCCTTAATTGCAATGTACAGAAAGCTTCAAGGAGGAGACCAACATGTACCTCGGTTAGAGATAAACAAATGCAGAAGAAACAATTTAATTGCTAAATTGCGGAAGACTTGTGAGAAGATGCTTTCCAAATCTGGTACAGGTGATGAACTGCAGGGATCACTAGCCAAAGCCATGGCAGTAGCAGGCCTGTCACTGAAGTTGCAACCAGGTTTCCGCAATTCCACTGTACCAGAATTTCACCTATTCTCACAAGAGGTAAAGATACTGCAGGATGATATTGCAAGTGCTATTTGGCTGGTTAGTTCTAAATCAAAGGTTAGCATGCCAGAGCTCGAATACTTGAAGAGTCTATTAGACCGAGATGCTAAAGTATCAAAGAGGAGTTTACGATATGCAATTAAGAAGATGCTAACAGAATATCTTTTTTTGTGTGGTGATATGGATACAATTCCGGAGTCATTATCAGAAACTGTTGATTTTATCAACAAGAAGTCACAAAAGAAGATGCATAGACCCATTTTAATGGATGAAATTGATGAAGAAGTGGAATGTGTATTGAATGTGAGTGCTCAGACAAAACAGATCGTATGGGATATGTTTCCTCACCATGAGTTAGATCTAGACTTTGCTGACGCATATGTGGAGGAAATGGAGGATGAAGACGATGATGAGGATGATAGCGATGATGATGACAACCATAATCAAGGTTTGCCACTGGAACAAAGTTCATGTGAAAGTGACAGATCTCACTCTGATGACTCACATTATGACGATGAAAGTATTGGGGACTCACCCTTTACTTCTAACCTGCCTACTGCTGCAACTACCAAAAGTGAGTGTAATCCTGCTGATAACAGCAGTGTCTTTGTTGAGGAGCTTGAAACATCGTTCTCCAATCAACGAATTTCTGGGGACCCCAATGGTGAAAGAGGTTTTCATGGGACTTCTACTGAGAGACATGAACCTGAACATAACACTGGAACAGATACAGAAGAACAGTTTCATCTTGAGCCAGATGATGTGCATAAACAAACTACTTGTAACAAATACCTTGCAATTCAAAAAGTGTGTGATGAGACAAGTATGATAGCTCATGATCTTGTTGGTCATATGTTGGAGGAGTTTGCACAGATAGAAGGCTTGGATTTGGGTTGGGATGAAACTTTATTTTTCAATGGTGATTATGCAACTCAAGAAGATTCTGAAGGAAGGCAGATATCGTCCGAGGAGAACAAAGGCGGTTGTGTAATTGTTAATGCAATTGAGGAATTAATACCTTCATTCCCAAAGAGTGGAATTGAAGCATTAAGGATCTTGTTGGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

642

Amino Acids

72.77

Weight (kDa)

4.84

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 1413
AccB7I CCANNNNNTGG 1 cut(s) 1889
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 3 cut(s) 697, 811, 1836
AclWI GGATC 2 cut(s) 760, 1916
AcsI RAATTY 4 cut(s) 437, 496, 830, 1500
AcuI CTGAAG 3 cut(s) 563, 812, 1821
AfaI GTAC 5 cut(s) 567, 614, 645, 733, 825
AfiI CCNNNNNNNGG 1 cut(s) 1889
AflIII ACRYGT 1 cut(s) 640
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 802
AluBI AGCT 5 cut(s) 353, 622, 928, 1474, 1688
AluI AGCT 5 cut(s) 353, 622, 928, 1474, 1688
Alw21I GWGCWC 2 cut(s) 930, 1168
Alw26I GTCTC 5 cut(s) 23, 185, 627, 1546, 1667
AlwI GGATC 2 cut(s) 760, 1916
AlwNI CAGNNNCTG 1 cut(s) 1067
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 2 cut(s) 215, 1415
ApoI RAATTY 4 cut(s) 437, 496, 830, 1500
AseI ATTAAT 1 cut(s) 1868
Asp700I GAANNNNTTC 1 cut(s) 1596
AspS9I GGNCC 1 cut(s) 1510
AsuHPI GGTGA 7 cut(s) 749, 827, 1043, 1193, 1380, 1532, 1787
AvaII GGWCC 1 cut(s) 1510
BanII GRGCYC 1 cut(s) 930
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 3 cut(s) 300, 707, 1263
Bbv12I GWGCWC 2 cut(s) 930, 1168
BbvI GCAGC 2 cut(s) 227, 1402
BccI CCATC 2 cut(s) 390, 566
BciT130I CCWGG 1 cut(s) 804
BciVI GTATCC 1 cut(s) 1033
BcoDI GTCTC 5 cut(s) 23, 185, 627, 1546, 1667
BfaI CTAG 2 cut(s) 758, 1217
BfmI CTRYAG 2 cut(s) 746, 863
BfuAI ACCTGC 1 cut(s) 1413
BfuI GTATCC 1 cut(s) 1033
BglII AGATCT 2 cut(s) 1213, 1340
BisI GCNGC 2 cut(s) 216, 1416
BlsI GCNGC 2 cut(s) 217, 1417
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 1 cut(s) 1510
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 1510
BmiI GGNNCC 2 cut(s) 1511, 1512
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 4 cut(s) 705, 949, 993, 1092
BpiI GAAGAC 3 cut(s) 300, 707, 1263
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 2 cut(s) 1625, 1773
BsaI GGTCTC 3 cut(s) 23, 185, 627
BsaJI CCNNGG 3 cut(s) 647, 768, 1821
BsaWI WCCGGW 1 cut(s) 1048
Bsc4I CCNNNNNNNGG 1 cut(s) 1889
Bse1I ACTGG 3 cut(s) 573, 1317, 1579
Bse3DI GCAATG 2 cut(s) 238, 615
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 1 cut(s) 804
BseDI CCNNGG 3 cut(s) 647, 768, 1821
BseGI GGATG 6 cut(s) 577, 874, 1129, 1258, 1276, 1759
BseLI CCNNNNNNNGG 1 cut(s) 1889
BseMI GCAATG 2 cut(s) 238, 615
BseMII CTCAG 3 cut(s) 181, 1181, 1539
BseNI ACTGG 3 cut(s) 573, 1317, 1579
BseRI GAGGAG 5 cut(s) 645, 991, 1484, 1730, 1838
BseXI GCAGC 2 cut(s) 227, 1402
BshFI GGCC 1 cut(s) 783
BsiHKAI GWGCWC 2 cut(s) 930, 1168
BsiSI CCGG 2 cut(s) 155, 1049
BslFI GGGAC 3 cut(s) 1397, 1523, 1552
BslI CCNNNNNNNGG 1 cut(s) 1889
BsmAI GTCTC 5 cut(s) 23, 185, 627, 1546, 1667
BsmFI GGGAC 3 cut(s) 1397, 1523, 1552
BsnI GGCC 1 cut(s) 783
Bso31I GGTCTC 3 cut(s) 23, 185, 627
Bsp1286I GDGCHC 2 cut(s) 930, 1168
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 3 cut(s) 697, 811, 1836
BspANI GGCC 1 cut(s) 783
BspCNI CTCAG 3 cut(s) 180, 1180, 1540
BspEI TCCGGA 1 cut(s) 1048
BspHI TCATGA 1 cut(s) 1690
BspLI GGNNCC 2 cut(s) 1511, 1512
BspMAI CTGCAG 2 cut(s) 750, 867
BspMI ACCTGC 1 cut(s) 1413
BspPI GGATC 2 cut(s) 760, 1916
BspTNI GGTCTC 3 cut(s) 23, 185, 627
BsrDI GCAATG 2 cut(s) 238, 615
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 3 cut(s) 573, 1317, 1579
BssECI CCNNGG 3 cut(s) 647, 768, 1821
BssMI GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 768
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 6 cut(s) 196, 520, 540, 823, 1069, 1596
Bst6I CTCTTC 1 cut(s) 935
BstAUI TGTACA 1 cut(s) 612
BstC8I GCNNGC 3 cut(s) 229, 781, 920
BstDEI CTNAG 5 cut(s) 167, 333, 482, 1167, 1548
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 6 cut(s) 577, 874, 1129, 1258, 1276, 1759
BstKTI GATC 7 cut(s) 148, 755, 1182, 1216, 1343, 1696, 1911
BstMAI GTCTC 5 cut(s) 23, 185, 627, 1546, 1667
BstMBI GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
BstMWI GCNNNNNNNGC 3 cut(s) 212, 224, 605
BstNI CCWGG 1 cut(s) 804
BstNSI RCATGY 3 cut(s) 231, 644, 922
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 2 cut(s) 746, 863
BstV1I GCAGC 2 cut(s) 227, 1402
BstV2I GAAGAC 3 cut(s) 300, 707, 1263
BstX2I RGATCY 3 cut(s) 1213, 1340, 1908
BstXI CCANNNNNNTGG 2 cut(s) 769, 1120
BstYI RGATCY 3 cut(s) 1213, 1340, 1908
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 1 cut(s) 783
BtgI CCRYGG 1 cut(s) 768
BtgZI GCGATG 1 cut(s) 1293
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 6 cut(s) 577, 874, 1129, 1258, 1276, 1759
BtsI GCAGTG 1 cut(s) 1462
BtsIMutI CAGTG 5 cut(s) 788, 819, 1310, 1462, 1572
BveI ACCTGC 1 cut(s) 1413
Cac8I GCNNGC 3 cut(s) 229, 781, 920
CaiI CAGNNNCTG 1 cut(s) 1067
CciI TCATGA 1 cut(s) 1690
Cfr13I GGNCC 1 cut(s) 1510
CseI GACGC 1 cut(s) 1238
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 5 cut(s) 566, 613, 644, 732, 824
CviQI GTAC 5 cut(s) 566, 613, 644, 732, 824
DdeI CTNAG 5 cut(s) 167, 333, 482, 1167, 1548
DpnI GATC 7 cut(s) 147, 754, 1181, 1215, 1342, 1695, 1910
DpnII GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
DraI TTTAAA 1 cut(s) 463
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 935
EarI CTCTTC 1 cut(s) 935
Ecl136II GAGCTC 1 cut(s) 928
Eco130I CCWWGG 1 cut(s) 768
Eco147I AGGCCT 1 cut(s) 783
Eco24I GRGCYC 1 cut(s) 930
Eco31I GGTCTC 3 cut(s) 23, 185, 627
Eco32I GATATC 1 cut(s) 1815
Eco47I GGWCC 1 cut(s) 1510
Eco53kI GAGCTC 1 cut(s) 928
Eco57I CTGAAG 3 cut(s) 563, 812, 1821
EcoICRI GAGCTC 1 cut(s) 928
EcoO109I RGGNCCY 1 cut(s) 1510
EcoRII CCWGG 1 cut(s) 802
EcoRV GATATC 1 cut(s) 1815
EcoT14I CCWWGG 1 cut(s) 768
EcoT22I ATGCAT 1 cut(s) 1107
EcoT38I GRGCYC 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 768
FaqI GGGAC 3 cut(s) 1397, 1523, 1552
FauNDI CATATG 2 cut(s) 1234, 1707
Fnu4HI GCNGC 2 cut(s) 216, 1416
FokI GGATG 6 cut(s) 584, 881, 1136, 1265, 1283, 1766
FriOI GRGCYC 1 cut(s) 930
Fsp4HI GCNGC 2 cut(s) 216, 1416
FspBI CTAG 2 cut(s) 758, 1217
GluI GCNGC 2 cut(s) 216, 1416
HaeIII GGCC 1 cut(s) 783
HapII CCGG 2 cut(s) 155, 1049
HgaI GACGC 1 cut(s) 1238
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 620
HpaII CCGG 2 cut(s) 155, 1049
HphI GGTGA 7 cut(s) 749, 827, 1043, 1193, 1380, 1532, 1787
Hpy166II GTNNAC 2 cut(s) 476, 983
Hpy188III TCNNGA 8 cut(s) 260, 317, 581, 1049, 1217, 1604, 1691, 1790
Hpy8I GTNNAC 2 cut(s) 476, 983
HpyAV CCTTC 4 cut(s) 1727, 1796, 1800, 1884
HpyCH4III ACNGT 6 cut(s) 196, 520, 540, 823, 1069, 1596
HpyCH4IV ACGT 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 224, 605
HpyF3I CTNAG 5 cut(s) 167, 333, 482, 1167, 1548
HpySE526I ACGT 1 cut(s) 142
KflI GGGWCCC 1 cut(s) 1510
Kpn2I TCCGGA 1 cut(s) 1048
Kzo9I GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
LmnI GCTCC 2 cut(s) 224, 1471
Lsp1109I GCAGC 2 cut(s) 227, 1402
LweI GCATC 4 cut(s) 705, 949, 993, 1092
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 2 cut(s) 758, 1217
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 6 cut(s) 485, 514, 786, 1089, 1334, 1637
MalI GATC 7 cut(s) 147, 754, 1181, 1215, 1342, 1695, 1910
MboI GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
MfeI CAATTG 1 cut(s) 1857
MflI RGATCY 3 cut(s) 1213, 1340, 1908
MhlI GDGCHC 2 cut(s) 930, 1168
MlyI GAGTC 4 cut(s) 952, 1061, 1349, 1379
MmeI TCCRAC 1 cut(s) 1692
Mph1103I ATGCAT 1 cut(s) 1107
MroI TCCGGA 1 cut(s) 1048
MroXI GAANNNNTTC 1 cut(s) 1596
MseI TTAA 9 cut(s) 48, 462, 602, 683, 996, 1118, 1851, 1868, 1904
MslI CAYNNNNRTG 4 cut(s) 483, 549, 1118, 1350
MspI CCGG 2 cut(s) 155, 1049
MspR9I CCNGG 1 cut(s) 804
MunI CAATTG 1 cut(s) 1857
MvaI CCWGG 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 212, 224, 605
NcoI CCATGG 1 cut(s) 768
NdeI CATATG 2 cut(s) 1234, 1707
NdeII GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
NlaIV GGNNCC 2 cut(s) 1511, 1512
NmuCI GTSAC 4 cut(s) 485, 786, 1089, 1334
NsiI ATGCAT 1 cut(s) 1107
NspI RCATGY 3 cut(s) 231, 644, 922
PaeI GCATGC 2 cut(s) 231, 922
PagI TCATGA 1 cut(s) 1690
PceI AGGCCT 1 cut(s) 783
PciI ACATGT 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 1596
PfeI GAWTC 7 cut(s) 67, 110, 158, 247, 422, 449, 1796
PflMI CCANNNNNTGG 1 cut(s) 1889
PkrI GCNGC 2 cut(s) 217, 1417
PleI GAGTC 4 cut(s) 951, 1060, 1349, 1379
PpsI GAGTC 4 cut(s) 951, 1060, 1349, 1379
PpuMI RGGWCCY 1 cut(s) 1510
PscI ACATGT 1 cut(s) 640
PshBI ATTAAT 1 cut(s) 1868
Psp124BI GAGCTC 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 1510
Psp6I CCWGG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 802
PspN4I GGNNCC 2 cut(s) 1511, 1512
PspPI GGNCC 1 cut(s) 1510
PspPPI RGGWCCY 1 cut(s) 1510
PstI CTGCAG 2 cut(s) 750, 867
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 3 cut(s) 1213, 1340, 1908
RsaI GTAC 5 cut(s) 567, 614, 645, 733, 825
RsaNI GTAC 5 cut(s) 566, 613, 644, 732, 824
RseI CAYNNNNRTG 4 cut(s) 483, 549, 1118, 1350
SacI GAGCTC 1 cut(s) 930
SaqAI TTAA 9 cut(s) 48, 462, 602, 683, 996, 1118, 1851, 1868, 1904
SatI GCNGC 2 cut(s) 216, 1416
Sau3AI GATC 7 cut(s) 145, 752, 1179, 1213, 1340, 1693, 1908
Sau96I GGNCC 1 cut(s) 1510
SchI GAGTC 4 cut(s) 952, 1061, 1349, 1379
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 2 cut(s) 930, 1168
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 4 cut(s) 705, 949, 993, 1092
SfcI CTRYAG 2 cut(s) 746, 863
SinI GGWCC 1 cut(s) 1510
SmiMI CAYNNNNRTG 4 cut(s) 483, 549, 1118, 1350
SmlI CTYRAG 2 cut(s) 1604, 1788
SmoI CTYRAG 2 cut(s) 1604, 1788
SphI GCATGC 2 cut(s) 231, 922
SseBI AGGCCT 1 cut(s) 783
SsiI CCGC 3 cut(s) 697, 811, 1836
SspMI CTAG 2 cut(s) 758, 1217
SstI GAGCTC 1 cut(s) 930
StuI AGGCCT 1 cut(s) 783
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 6 cut(s) 196, 520, 540, 823, 1069, 1596
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 394, 930
TaqII GACCGA 2 cut(s) 364, 969
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 7 cut(s) 67, 110, 158, 247, 422, 449, 1796
Tru1I TTAA 9 cut(s) 48, 462, 602, 683, 996, 1118, 1851, 1868, 1904
Tru9I TTAA 9 cut(s) 48, 462, 602, 683, 996, 1118, 1851, 1868, 1904
TscAI CASTG 5 cut(s) 795, 826, 1317, 1462, 1579
TseFI GTSAC 4 cut(s) 485, 786, 1089, 1334
TseI GCWGC 2 cut(s) 215, 1415
Tsp45I GTSAC 4 cut(s) 485, 786, 1089, 1334
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 5 cut(s) 795, 826, 1317, 1462, 1579
Van91I CCANNNNNTGG 1 cut(s) 1889
VpaK11BI GGWCC 1 cut(s) 1510
VspI ATTAAT 1 cut(s) 1868
XapI RAATTY 4 cut(s) 437, 496, 830, 1500
XbaI TCTAGA 1 cut(s) 1216
XceI RCATGY 3 cut(s) 231, 644, 922
XmnI GAANNNNTTC 1 cut(s) 1596
XspI CTAG 2 cut(s) 758, 1217
Zsp2I ATGCAT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.