Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003395

Physical Location & Seq

Genomic Coordinates Forward (+)

15432778 .. 15436606

Gene Structure 3829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGATGGAAAACTTTGTGTTCTACCAAACGGATTGCGAGACCCTTTGGTCTCAGATTAAATGCAAAGAGAAGCAGATTCAACTCAAACGGAGCAGGTGGTTGTTGGGTCTTCCTCTCTCTCAATCTGAGCACACCCTGTTTCAAAGTCCTGACTTTGAACGAGATTCATTGCCGGAATCTTTGCTCAGGGAAGATGATCTGTTCTATGAGACTGCAAAGTCTTCTGTTCAAGCAGCCTTTGGAGCATGCAATGTTGAAGCAGGGAAGCAAGATAATAGTGTAATGCTCGACAGAAAAAGTATATCCACAGCCTTGTCATCGCCATGTCTTGATGATTTGACTACTAAGGGGCTTCACCTTATAGCTACTACACTTGCAGCAGGGTCAGTCAAGTTTGAGAACACTCGTTGCGAGATGAAGAAGTTTATCAGAGAATCTCTGCAAAAAAAATTTGGAAGCCAAAATAATCATGACGATGAGTTGGGCATTTTTAAGCAACTATCTCAACATCTTAGTGACCCACAAAATTTCCGAGATAAGGTTGTTACAGTTCTTTCCAGATCACAGTCTCAATGTCTTGCTGTTAGAAAGGTACTGGATGGACTTGAGGACTTGCCTTCTGAGACCCTATTTGCAATGAGCAGAAAGCTTAAAGGAGTTCAACATTTACCTCAGTTACATCAAAAGAAAAATACATTGTACAAAAAGACTTTGATTGATCAATTGCGGAAAACTTGTGACATGATGCTTTCCGAACTTGGTACAGGAGGTGAATTGCAGGAATCACTAGCCAAAGCCATGGCAGTAGCAGGCCTATCAGTGAAGTTACAACCAGGTCTCCATAATTCGACTGTAACAGAATTTCGCCAATTTTCACAAGAGATAAAGATACTGCAGGATGATATTGCACGGGCTATTTGGCTAGTTGAAAAAAAGGTTAGCTTGCTAGAGCTCGAAAAGTTGAAGACTATATTAGGCCGAGATGCTGAAGTATCAAACAGGAGCTTACGATATGCAATTAAGAAAATGCTAACTGAATATCTCTTTGAGTGTGGTGATATGGATACAACTCCGAAGTCATTATTAGAAGCTCTTGATATTATCAACATGTCACAAAACAAGCTGCATAGACCCATCTTAAAGGATGAAATTGAAGAAGAGGTGGAATGTATATTGAATGTGAGTGCTCAGGCAAAGCAGATTGTATGGGATATGTTCCCTGACCATGAGTTAGATCTAGACTTTGCTGAGGCATATGTTGAGGAAATGGAGGATGAAGAGGATGATGAGGATGATGAGGATGATGGTGATGATAGGTCTAGCAATGATGATAACAACCATAATCATGGTTCGCCACAGGAACAAAGAATATCTGGAAGTGACAGATCTCACTCTGATGATTCACATTATGAGGATGAAAGCACTGGGGAAACAATGTTCTCCAATCAAGGAACTTCTCATGATTTCAATGGTATTAGACGAGGGTTTCCTGGGACTTCTACTGAGAGACATGAACCTGAACATGACACCGGAATGGATACAGAAGACCCTTTGCATGTCGAGCCAGATGATGTGCGTAAACAAACCACTTGTAACCAATACCTTGCAATTCAAGAAGTGTCCGATAAGACAAGCATGATAGCCCATGATCTTGTTGGTCATATGTTGGAGGAGTTTGCACAGAAAGATGGCTTGGATTTGGACTGGGATGATACATTATATCTGAAAGGTGATTGTGCAACTCGAGAAGATTCAGGAGTGGTAGAAGAAAGGCAGACATTGTCTCAGGAGAACAAAGGCGGTTCTGTAATTGTTAGTGTAATTGAGGATCTAATACCTTCATTTCCAAAGAGTGGAATCGAAGCATTAAGGAACTTGGTGGGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

629

Amino Acids

71.22

Weight (kDa)

4.74

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40520 AT5G40520
fragaria_vesca	FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220 FvH4_1g27220
malus_domestica	MD04G1046800.v1.1
prunus_persica	Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1 Prupe.8G045700_v2.0.a1
pyrus_communis	pycom04g04060
rosa_chinensis	RchiOBHm_Chr3g0487611
rosa_laevigata	RLG00000022996
rosa_multiflora	Rmu_sc0012412.1_g000009
rosa_roxburghii	Rroxscaffold_6G00394650
rosa_rugosa	Rorug03G0235000 Rorug03G0235100 Rorug03G0235100
rosa_samantha	Rh3AG283300 Rh3BG319000 Rh3CG317100 Rh3DG315300
rosa_wichuraiana	Rw3G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	84
AasI	GACNNNNNNGTC	2 cut(s)	46, 217
Acc36I	ACCTGC	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	1853
AciI	CCGC	2 cut(s)	727, 1800
AclWI	GGATC	1 cut(s)	1836
AcsI	RAATTY	3 cut(s)	449, 526, 860
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	3 cut(s)	594, 701, 763
AfiI	CCNNNNNNNGG	2 cut(s)	538, 1853
AflIII	ACRYGT	1 cut(s)	1107
AjnI	CCWGG	2 cut(s)	832, 1489
AjuI	GAANNNNNNNTTGG	2 cut(s)	1676, 1708
AloI	GAACNNNNNNTCC	2 cut(s)	1421, 1453
AluBI	AGCT	7 cut(s)	365, 649, 942, 952, 1005, 1091, 1123
AluI	AGCT	7 cut(s)	365, 649, 942, 952, 1005, 1091, 1123
Alw21I	GWGCWC	3 cut(s)	132, 954, 1189
Alw26I	GTCTC	8 cut(s)	32, 54, 203, 573, 617, 842, 1501, 1788
AlwI	GGATC	1 cut(s)	1836
Ama87I	CYCGRG	1 cut(s)	1743
AoxI	GGCC	2 cut(s)	811, 976
ApeKI	GCWGC	3 cut(s)	233, 377, 1123
ApoI	RAATTY	3 cut(s)	449, 526, 860
AsuHPI	GGTGA	5 cut(s)	347, 782, 1067, 1319, 1742
AvaI	CYCGRG	1 cut(s)	1743
BanII	GRGCYC	1 cut(s)	954
BbsI	GAAGAC	4 cut(s)	101, 213, 971, 1551
Bbv12I	GWGCWC	3 cut(s)	132, 954, 1189
BbvCI	CCTCAGC	1 cut(s)	1248
BbvI	GCAGC	3 cut(s)	245, 389, 1110
BccI	CCATC	4 cut(s)	593, 1142, 1298, 1682
BciT130I	CCWGG	2 cut(s)	834, 1491
BciVI	GTATCC	2 cut(s)	1057, 1531
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	8 cut(s)	32, 54, 203, 573, 617, 842, 1501, 1788
BfaI	CTAG	5 cut(s)	788, 923, 947, 1238, 1320
BfmI	CTRYAG	1 cut(s)	893
BfuAI	ACCTGC	1 cut(s)	84
BfuI	GTATCC	2 cut(s)	1057, 1531
BglII	AGATCT	2 cut(s)	1234, 1385
BisI	GCNGC	3 cut(s)	234, 378, 1124
BlsI	GCNGC	3 cut(s)	235, 379, 1125
Bme1390I	CCNGG	2 cut(s)	834, 1491
BmeT110I	CYCGRG	1 cut(s)	1743
BmrFI	CCNGG	2 cut(s)	834, 1491
BmrI	ACTGGG	2 cut(s)	1434, 1714
BmsI	GCATC	2 cut(s)	735, 973
BmuI	ACTGGG	2 cut(s)	1434, 1714
BpiI	GAAGAC	4 cut(s)	101, 213, 971, 1551
Bpu10I	CCTNAGC	3 cut(s)	185, 1188, 1248
BpuEI	CTTGAG	1 cut(s)	626
BsaI	GGTCTC	4 cut(s)	32, 54, 617, 842
BsaJI	CCNNGG	2 cut(s)	798, 1490
BsaWI	WCCGGW	1 cut(s)	1529
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 1853
Bse1I	ACTGG	3 cut(s)	600, 1429, 1709
Bse3DI	GCAATG	4 cut(s)	167, 256, 642, 1330
BseBI	CCWGG	2 cut(s)	834, 1491
BseDI	CCNNGG	2 cut(s)	798, 1490
BseGI	GGATG	9 cut(s)	604, 904, 1150, 1279, 1288, 1297, 1306, 1420, 1714
BseLI	CCNNNNNNNGG	2 cut(s)	538, 1853
BseMI	GCAATG	4 cut(s)	167, 256, 642, 1330
BseMII	CTCAG	9 cut(s)	65, 117, 199, 612, 686, 1202, 1239, 1494, 1799
BseNI	ACTGG	3 cut(s)	600, 1429, 1709
BseRI	GAGGAG	1 cut(s)	1685
BseXI	GCAGC	3 cut(s)	245, 389, 1110
BshFI	GGCC	2 cut(s)	813, 978
BsiHKAI	GWGCWC	3 cut(s)	132, 954, 1189
BsiHKCI	CYCGRG	1 cut(s)	1743
BsiSI	CCGG	2 cut(s)	173, 1530
BslFI	GGGAC	1 cut(s)	1507
BslI	CCNNNNNNNGG	2 cut(s)	538, 1853
BsmAI	GTCTC	8 cut(s)	32, 54, 203, 573, 617, 842, 1501, 1788
BsmFI	GGGAC	1 cut(s)	1507
BsnI	GGCC	2 cut(s)	813, 978
Bso31I	GGTCTC	4 cut(s)	32, 54, 617, 842
BsoBI	CYCGRG	1 cut(s)	1743
Bsp1286I	GDGCHC	3 cut(s)	132, 954, 1189
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
Bsp19I	CCATGG	1 cut(s)	798
BspACI	CCGC	2 cut(s)	727, 1800
BspANI	GGCC	2 cut(s)	813, 978
BspCNI	CTCAG	9 cut(s)	64, 118, 198, 613, 685, 1201, 1240, 1495, 1798
BspHI	TCATGA	2 cut(s)	469, 1459
BspMAI	CTGCAG	1 cut(s)	897
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	1836
BspTNI	GGTCTC	4 cut(s)	32, 54, 617, 842
BsrDI	GCAATG	4 cut(s)	167, 256, 642, 1330
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	3 cut(s)	600, 1429, 1709
BssECI	CCNNGG	2 cut(s)	798, 1490
BssMI	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
BssT1I	CCWWGG	1 cut(s)	798
Bst2UI	CCWGG	2 cut(s)	834, 1491
Bst4CI	ACNGT	3 cut(s)	550, 567, 853
Bst6I	CTCTTC	2 cut(s)	1152, 1272
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	3 cut(s)	247, 811, 944
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	9 cut(s)	604, 904, 1150, 1279, 1288, 1297, 1306, 1420, 1714
BstKTI	GATC	7 cut(s)	199, 563, 721, 1237, 1388, 1651, 1831
BstMAI	GTCTC	8 cut(s)	32, 54, 203, 573, 617, 842, 1501, 1788
BstMBI	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 1561
BstNI	CCWGG	2 cut(s)	834, 1491
BstNSI	RCATGY	3 cut(s)	249, 1111, 1559
BstSCI	CCNGG	2 cut(s)	832, 1489
BstSFI	CTRYAG	1 cut(s)	893
BstV1I	GCAGC	3 cut(s)	245, 389, 1110
BstV2I	GAAGAC	4 cut(s)	101, 213, 971, 1551
BstX2I	RGATCY	3 cut(s)	1234, 1385, 1828
BstXI	CCANNNNNNTGG	2 cut(s)	799, 1346
BstYI	RGATCY	3 cut(s)	1234, 1385, 1828
BsuI	GTATCC	2 cut(s)	1057, 1531
BsuRI	GGCC	2 cut(s)	813, 978
BtgI	CCRYGG	1 cut(s)	798
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	9 cut(s)	604, 904, 1150, 1279, 1288, 1297, 1306, 1420, 1714
BtsIMutI	CAGTG	2 cut(s)	825, 1422
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	247, 811, 944
CciI	TCATGA	2 cut(s)	469, 1459
CsiI	ACCWGGT	1 cut(s)	832
Csp6I	GTAC	3 cut(s)	593, 700, 762
CviQI	GTAC	3 cut(s)	593, 700, 762
DpnI	GATC	7 cut(s)	198, 562, 720, 1236, 1387, 1650, 1830
DpnII	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
DrdI	GACNNNNNNGTC	2 cut(s)	46, 217
DseDI	GACNNNNNNGTC	2 cut(s)	46, 217
Eam1104I	CTCTTC	2 cut(s)	1152, 1272
EarI	CTCTTC	2 cut(s)	1152, 1272
Ecl136II	GAGCTC	1 cut(s)	952
Eco130I	CCWWGG	1 cut(s)	798
Eco147I	AGGCCT	1 cut(s)	813
Eco24I	GRGCYC	1 cut(s)	954
Eco31I	GGTCTC	4 cut(s)	32, 54, 617, 842
Eco53kI	GAGCTC	1 cut(s)	952
Eco57I	CTGAAG	1 cut(s)	1008
Eco88I	CYCGRG	1 cut(s)	1743
EcoICRI	GAGCTC	1 cut(s)	952
EcoRII	CCWGG	2 cut(s)	832, 1489
EcoT14I	CCWWGG	1 cut(s)	798
EcoT38I	GRGCYC	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	798
FalI	AAGNNNNNCTT	2 cut(s)	926, 958
FaqI	GGGAC	1 cut(s)	1507
FauNDI	CATATG	2 cut(s)	1255, 1662
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	3 cut(s)	234, 378, 1124
FokI	GGATG	9 cut(s)	611, 911, 1157, 1286, 1295, 1304, 1313, 1427, 1721
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	3 cut(s)	234, 378, 1124
FspBI	CTAG	5 cut(s)	788, 923, 947, 1238, 1320
GluI	GCNGC	3 cut(s)	234, 378, 1124
HaeIII	GGCC	2 cut(s)	813, 978
HapII	CCGG	2 cut(s)	173, 1530
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	8 cut(s)	76, 164, 176, 434, 782, 1400, 1751, 1857
HpaII	CCGG	2 cut(s)	173, 1530
HphI	GGTGA	5 cut(s)	347, 782, 1067, 1319, 1742
Hpy166II	GTNNAC	1 cut(s)	1580
Hpy8I	GTNNAC	1 cut(s)	1580
HpyAV	CCTTC	2 cut(s)	627, 1848
HpyCH4III	ACNGT	3 cut(s)	550, 567, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 1561
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
LmnI	GCTCC	3 cut(s)	90, 242, 1002
Lsp1109I	GCAGC	3 cut(s)	245, 389, 1110
LweI	GCATC	2 cut(s)	735, 973
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	5 cut(s)	788, 923, 947, 1238, 1320
MaeIII	GTNAC	9 cut(s)	515, 544, 675, 737, 825, 853, 1110, 1379, 1592
MalI	GATC	7 cut(s)	198, 562, 720, 1236, 1387, 1650, 1830
MboI	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
MfeI	CAATTG	1 cut(s)	722
MflI	RGATCY	3 cut(s)	1234, 1385, 1828
MhlI	GDGCHC	3 cut(s)	132, 954, 1189
MmeI	TCCRAC	1 cut(s)	1647
MseI	TTAA	6 cut(s)	57, 492, 651, 1020, 1139, 1868
MslI	CAYNNNNRTG	6 cut(s)	322, 474, 513, 1344, 1395, 1532
MspI	CCGG	2 cut(s)	173, 1530
MspR9I	CCNGG	2 cut(s)	834, 1491
MunI	CAATTG	1 cut(s)	722
MvaI	CCWGG	2 cut(s)	834, 1491
MwoI	GCNNNNNNNGC	2 cut(s)	242, 1561
NcoI	CCATGG	1 cut(s)	798
NdeI	CATATG	2 cut(s)	1255, 1662
NdeII	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
NmeAIII	GCCGAG	1 cut(s)	1004
NmuCI	GTSAC	4 cut(s)	515, 737, 1110, 1379
NspI	RCATGY	3 cut(s)	249, 1111, 1559
PaeI	GCATGC	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	1743
PagI	TCATGA	2 cut(s)	469, 1459
PaqCI	CACCTGC	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	813
PciI	ACATGT	1 cut(s)	1107
PfeI	GAWTC	8 cut(s)	76, 164, 176, 434, 782, 1400, 1751, 1857
PflFI	GACNNNGTC	1 cut(s)	1780
PflMI	CCANNNNNTGG	1 cut(s)	1853
PkrI	GCNGC	3 cut(s)	235, 379, 1125
PscI	ACATGT	1 cut(s)	1107
Psp124BI	GAGCTC	1 cut(s)	954
Psp6I	CCWGG	2 cut(s)	832, 1489
PspGI	CCWGG	2 cut(s)	832, 1489
PstI	CTGCAG	1 cut(s)	897
PsuI	RGATCY	3 cut(s)	1234, 1385, 1828
PsyI	GACNNNGTC	1 cut(s)	1780
RsaI	GTAC	3 cut(s)	594, 701, 763
RsaNI	GTAC	3 cut(s)	593, 700, 762
RseI	CAYNNNNRTG	6 cut(s)	322, 474, 513, 1344, 1395, 1532
SacI	GAGCTC	1 cut(s)	954
SaqAI	TTAA	6 cut(s)	57, 492, 651, 1020, 1139, 1868
SatI	GCNGC	3 cut(s)	234, 378, 1124
Sau3AI	GATC	7 cut(s)	196, 560, 718, 1234, 1385, 1648, 1828
ScrFI	CCNGG	2 cut(s)	834, 1491
SduI	GDGCHC	3 cut(s)	132, 954, 1189
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	2 cut(s)	735, 973
SfcI	CTRYAG	1 cut(s)	893
Sfr274I	CTCGAG	1 cut(s)	1743
SlaI	CTCGAG	1 cut(s)	1743
SmiMI	CAYNNNNRTG	6 cut(s)	322, 474, 513, 1344, 1395, 1532
SmlI	CTYRAG	2 cut(s)	605, 1743
SmoI	CTYRAG	2 cut(s)	605, 1743
SphI	GCATGC	1 cut(s)	249
SseBI	AGGCCT	1 cut(s)	813
SsiI	CCGC	2 cut(s)	727, 1800
SspMI	CTAG	5 cut(s)	788, 923, 947, 1238, 1320
SstI	GAGCTC	1 cut(s)	954
StuI	AGGCCT	1 cut(s)	813
StyD4I	CCNGG	2 cut(s)	832, 1489
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	3 cut(s)	550, 567, 853
TaqI	TCGA	6 cut(s)	288, 848, 954, 1560, 1744, 1860
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	8 cut(s)	76, 164, 176, 434, 782, 1400, 1751, 1857
Tru1I	TTAA	6 cut(s)	57, 492, 651, 1020, 1139, 1868
Tru9I	TTAA	6 cut(s)	57, 492, 651, 1020, 1139, 1868
TscAI	CASTG	2 cut(s)	825, 1429
TseFI	GTSAC	4 cut(s)	515, 737, 1110, 1379
TseI	GCWGC	3 cut(s)	233, 377, 1123
Tsp45I	GTSAC	4 cut(s)	515, 737, 1110, 1379
TspDTI	ATGAA	7 cut(s)	156, 431, 1161, 1290, 1431, 1527, 1830
TspGWI	ACGGA	2 cut(s)	44, 103
TspRI	CASTG	2 cut(s)	825, 1429
Tth111I	GACNNNGTC	1 cut(s)	1780
Van91I	CCANNNNNTGG	1 cut(s)	1853
XapI	RAATTY	3 cut(s)	449, 526, 860
XbaI	TCTAGA	1 cut(s)	1237
XceI	RCATGY	3 cut(s)	249, 1111, 1559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1652
XhoI	CTCGAG	1 cut(s)	1743
XspI	CTAG	5 cut(s)	788, 923, 947, 1238, 1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.