Rh3DG315300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003395
Physical Location & Seq
Reverse (-)
33884378 .. 33887907
3530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG315300.1

Sequence Viewer

Length: 1614 bp
ATGCTCGACAGAAAAAGTATATCCACAGCCTTGTCATCGCCATGTCTTGATGATTTGACTACTAAGGGGCTTCACCTTATAGCTACTACACTTGCAGCAGGTTCTGTCAAGTTTGAGAACACTCGTTGCGAGATGAAGAAGTTTATCAGAGAATCTCTGCAAAAAAATTTTGGAAGCCAAAATAATCATGACGATGAGTTGGGCATTTTTAAGCAACTATCTCAACATCTTAGTGACCCACAAAATTTCCGAGATAAGGTTGTTACCGTTCTTTCCAGATCACAGTCTCAACGTCTTGCTGTTAGAAAGGTACTGGATGGACTTGAGGACTTGCCTTCTGAGACCCTATTTGCAATGAGCAGAAAGCTTAAAGGAGTACAACATTTCCCTCAGTTACATCAAAAGAAAAATACATTGTACAAAAAGACTTTGATTGATCAATTGCGGAAAACTTGTGACATGATGCTTTCCGAACTTGGTACAGGAGATGAACTGCAGGAATCACTAGCCACAGCCATGGCAGTAGCAGGCCTATCAGTGAAGTTACAACCAGGTCTCCATAATTCGACTGTAACAGAATTTCACCAATTTTCACAAGAGATAAAGATACTGCAGGATGATATTGCAAGGGCTATTTGGCTAGTTGAAAAAAAGGTTAGCTTGCTAGAGCTCGAAAAGCTGAAGACTATATTAGGCCGAGATGCTGAAGTATCAAACAGGAGCTTACGATATGCAATTAAGAAAATGCTAACTGAATATCTCTTCGAGTGTGGTGATATGGATACAATTCCGAAGTCATTATTAGAAGCTCTTGATATTATCAACATGTCACGAAACAAGCTGCATAGACTCTTCTTAAAGGATGAAATTGAAGAAGAGGTGGAATGTATATTGAATGTGAGTGCTCAGGCAAAGCAGATTGTATGGGATATGTTCCCTGACCATGAGTTAGATCTAGACTTTGCTGAGGCATATGTTGAGGAAATGGAGGATGAAGACGATGATGAGGATGACGATGATGATGGTGATGATAGGTCTAGCAATGATGATAACAACCATAATCATGGTTCGCCACAGGAACAAGGAATATCTGGAAGTGACAGATCTCACTCTGATGATTCACATTATGAGGATGAAAGCACTGGGGAAACAATGTTCTCTAATCAGGGAACTTCTCATGATTTCAATGGTATTAGAGGAGGGTTTCCTGGGACTTCTACTGAGAGACATGAACCTGAACATGACACTGGAATGGATACAGATGACCCTTTGCATGTCGAGCCAGAGCCAGATGATGTGCATAAACAAACCACTTGTAACCAATACCTTGCAATTCAAGAAGTGTCTGATAAGACAAGCATGATAGCCCATGATCTTGTTGGTCATATGTTGGAGGAGTTTGCACAGAAAGATGGCTTGGATTTGGACTGGGATGATACATTATATCTGAAAGGTGATTGTGCAACTCGAGAAGATTCAGGAGTGGTAGAAGAAAGGCAGACATTGTCTCAGGAGAACAAAGGCGGTTCTGTAATTGTTAGTGTAATTGAGGATCTAATACCTTCATTTCCAAAGAGTGGAATCGAAGCATTAAGGAACTTGGTGGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

537

Amino Acids

60.5

Weight (kDa)

4.67

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 1577
AciI CCGC 2 cut(s) 445, 1524
AclWI GGATC 1 cut(s) 1560
AcsI RAATTY 3 cut(s) 166, 244, 578
AcuI CTGAAG 2 cut(s) 701, 726
AfaI GTAC 4 cut(s) 312, 378, 419, 481
AfiI CCNNNNNNNGG 2 cut(s) 256, 1577
AflIII ACRYGT 1 cut(s) 825
AgsI TTSAA 5 cut(s) 647, 872, 895, 1186, 1337
AjnI CCWGG 2 cut(s) 550, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 1400, 1432
AloI GAACNNNNNNTCC 2 cut(s) 1139, 1171
AluBI AGCT 8 cut(s) 83, 367, 660, 670, 679, 723, 809, 841
AluI AGCT 8 cut(s) 83, 367, 660, 670, 679, 723, 809, 841
Alw21I GWGCWC 2 cut(s) 672, 907
Alw26I GTCTC 5 cut(s) 291, 335, 560, 1219, 1512
AlwI GGATC 1 cut(s) 1560
AlwNI CAGNNNCTG 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 1467
AoxI GGCC 2 cut(s) 529, 694
ApeKI GCWGC 2 cut(s) 95, 841
ApoI RAATTY 3 cut(s) 166, 244, 578
AsuHPI GGTGA 5 cut(s) 65, 575, 785, 1037, 1466
AvaI CYCGRG 1 cut(s) 1467
BanII GRGCYC 1 cut(s) 672
BbsI GAAGAC 2 cut(s) 689, 1002
Bbv12I GWGCWC 2 cut(s) 672, 907
BbvCI CCTCAGC 1 cut(s) 966
BbvI GCAGC 2 cut(s) 107, 828
BccI CCATC 3 cut(s) 311, 1016, 1406
BciT130I CCWGG 2 cut(s) 552, 1209
BciVI GTATCC 2 cut(s) 775, 1249
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 5 cut(s) 291, 335, 560, 1219, 1512
BfaI CTAG 5 cut(s) 506, 641, 665, 956, 1038
BfmI CTRYAG 2 cut(s) 494, 611
BfuAI ACCTGC 1 cut(s) 89
BfuI GTATCC 2 cut(s) 775, 1249
BglII AGATCT 2 cut(s) 952, 1103
BisI GCNGC 2 cut(s) 96, 842
BlsI GCNGC 2 cut(s) 97, 843
Bme1390I CCNGG 2 cut(s) 552, 1209
BmeT110I CYCGRG 1 cut(s) 1467
BmrFI CCNGG 2 cut(s) 552, 1209
BmrI ACTGGG 2 cut(s) 1152, 1438
BmsI GCATC 2 cut(s) 453, 691
BmuI ACTGGG 2 cut(s) 1152, 1438
BpiI GAAGAC 2 cut(s) 689, 1002
Bpu10I CCTNAGC 2 cut(s) 906, 966
BpuEI CTTGAG 1 cut(s) 344
BsaI GGTCTC 2 cut(s) 335, 560
BsaJI CCNNGG 2 cut(s) 516, 1208
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 1577
Bse1I ACTGG 4 cut(s) 318, 1147, 1252, 1433
Bse3DI GCAATG 2 cut(s) 360, 1048
BseBI CCWGG 2 cut(s) 552, 1209
BseDI CCNNGG 2 cut(s) 516, 1208
BseGI GGATG 7 cut(s) 322, 622, 868, 997, 1015, 1138, 1438
BseLI CCNNNNNNNGG 2 cut(s) 256, 1577
BseMI GCAATG 2 cut(s) 360, 1048
BseMII CTCAG 6 cut(s) 330, 404, 920, 957, 1212, 1523
BseNI ACTGG 4 cut(s) 318, 1147, 1252, 1433
BseRI GAGGAG 2 cut(s) 1212, 1409
BseXI GCAGC 2 cut(s) 107, 828
BshFI GGCC 2 cut(s) 531, 696
BsiHKAI GWGCWC 2 cut(s) 672, 907
BsiHKCI CYCGRG 1 cut(s) 1467
BslFI GGGAC 1 cut(s) 1225
BslI CCNNNNNNNGG 2 cut(s) 256, 1577
BsmAI GTCTC 5 cut(s) 291, 335, 560, 1219, 1512
BsmFI GGGAC 1 cut(s) 1225
BsnI GGCC 2 cut(s) 531, 696
Bso31I GGTCTC 2 cut(s) 335, 560
BsoBI CYCGRG 1 cut(s) 1467
Bsp1286I GDGCHC 2 cut(s) 672, 907
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
Bsp19I CCATGG 1 cut(s) 516
BspACI CCGC 2 cut(s) 445, 1524
BspANI GGCC 2 cut(s) 531, 696
BspCNI CTCAG 6 cut(s) 331, 403, 919, 958, 1213, 1522
BspHI TCATGA 2 cut(s) 187, 1177
BspMAI CTGCAG 2 cut(s) 498, 615
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 1 cut(s) 1560
BspTNI GGTCTC 2 cut(s) 335, 560
BsrDI GCAATG 2 cut(s) 360, 1048
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 4 cut(s) 318, 1147, 1252, 1433
BssECI CCNNGG 2 cut(s) 516, 1208
BssMI GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 552, 1209
Bst4CI ACNGT 3 cut(s) 268, 285, 571
Bst6I CTCTTC 3 cut(s) 767, 857, 870
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 529, 662
BstDEI CTNAG 8 cut(s) 63, 230, 339, 390, 906, 966, 1221, 1509
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 7 cut(s) 322, 622, 868, 997, 1015, 1138, 1438
BstKTI GATC 6 cut(s) 281, 439, 955, 1106, 1375, 1555
BstMAI GTCTC 5 cut(s) 291, 335, 560, 1219, 1512
BstMBI GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
BstMWI GCNNNNNNNGC 2 cut(s) 676, 1279
BstNI CCWGG 2 cut(s) 552, 1209
BstNSI RCATGY 2 cut(s) 829, 1277
BstSCI CCNGG 2 cut(s) 550, 1207
BstSFI CTRYAG 2 cut(s) 494, 611
BstV1I GCAGC 2 cut(s) 107, 828
BstV2I GAAGAC 2 cut(s) 689, 1002
BstX2I RGATCY 3 cut(s) 952, 1103, 1552
BstXI CCANNNNNNTGG 2 cut(s) 517, 1064
BstYI RGATCY 3 cut(s) 952, 1103, 1552
BsuI GTATCC 2 cut(s) 775, 1249
BsuRI GGCC 2 cut(s) 531, 696
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 7 cut(s) 322, 622, 868, 997, 1015, 1138, 1438
BtsIMutI CAGTG 3 cut(s) 543, 1140, 1245
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 529, 662
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 2 cut(s) 187, 1177
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 4 cut(s) 311, 377, 418, 480
CviQI GTAC 4 cut(s) 311, 377, 418, 480
DdeI CTNAG 8 cut(s) 63, 230, 339, 390, 906, 966, 1221, 1509
DpnI GATC 6 cut(s) 280, 438, 954, 1105, 1374, 1554
DpnII GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
Eam1104I CTCTTC 3 cut(s) 767, 857, 870
EarI CTCTTC 3 cut(s) 767, 857, 870
Ecl136II GAGCTC 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 516
Eco147I AGGCCT 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 672
Eco31I GGTCTC 2 cut(s) 335, 560
Eco53kI GAGCTC 1 cut(s) 670
Eco57I CTGAAG 2 cut(s) 701, 726
Eco88I CYCGRG 1 cut(s) 1467
EcoICRI GAGCTC 1 cut(s) 670
EcoRII CCWGG 2 cut(s) 550, 1207
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 516
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 1225
FauNDI CATATG 2 cut(s) 973, 1386
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 96, 842
FokI GGATG 7 cut(s) 329, 629, 875, 1004, 1022, 1145, 1445
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 2 cut(s) 96, 842
FspBI CTAG 5 cut(s) 506, 641, 665, 956, 1038
GluI GCNGC 2 cut(s) 96, 842
HaeIII GGCC 2 cut(s) 531, 696
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 6 cut(s) 152, 500, 849, 1118, 1475, 1581
HphI GGTGA 5 cut(s) 65, 575, 785, 1037, 1466
Hpy188I TCNGA 8 cut(s) 149, 251, 340, 472, 792, 1114, 1348, 1449
HpyAV CCTTC 2 cut(s) 345, 1572
HpyCH4III ACNGT 3 cut(s) 268, 285, 571
HpyCH4IV ACGT 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 676, 1279
HpyF3I CTNAG 8 cut(s) 63, 230, 339, 390, 906, 966, 1221, 1509
HpySE526I ACGT 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
LmnI GCTCC 1 cut(s) 720
Lsp1109I GCAGC 2 cut(s) 107, 828
LweI GCATC 2 cut(s) 453, 691
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 5 cut(s) 506, 641, 665, 956, 1038
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 9 cut(s) 233, 262, 393, 455, 543, 571, 828, 1097, 1316
MalI GATC 6 cut(s) 280, 438, 954, 1105, 1374, 1554
MboI GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
MboII GAAGA 9 cut(s) 148, 694, 754, 844, 884, 887, 1007, 1484, 1502
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 3 cut(s) 952, 1103, 1552
MhlI GDGCHC 2 cut(s) 672, 907
MlyI GAGTC 1 cut(s) 843
MmeI TCCRAC 1 cut(s) 1371
MseI TTAA 5 cut(s) 210, 369, 738, 857, 1592
MslI CAYNNNNRTG 7 cut(s) 40, 192, 231, 515, 1062, 1113, 1250
MspR9I CCNGG 2 cut(s) 552, 1209
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 2 cut(s) 552, 1209
MwoI GCNNNNNNNGC 2 cut(s) 676, 1279
NcoI CCATGG 1 cut(s) 516
NdeI CATATG 2 cut(s) 973, 1386
NdeII GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
NmeAIII GCCGAG 1 cut(s) 722
NmuCI GTSAC 4 cut(s) 233, 455, 828, 1097
NspI RCATGY 2 cut(s) 829, 1277
PaeR7I CTCGAG 1 cut(s) 1467
PagI TCATGA 2 cut(s) 187, 1177
PceI AGGCCT 1 cut(s) 531
PciI ACATGT 1 cut(s) 825
PfeI GAWTC 5 cut(s) 152, 500, 1118, 1475, 1581
PflFI GACNNNGTC 1 cut(s) 1504
PflMI CCANNNNNTGG 1 cut(s) 1577
PkrI GCNGC 2 cut(s) 97, 843
PleI GAGTC 1 cut(s) 843
PpsI GAGTC 1 cut(s) 843
PscI ACATGT 1 cut(s) 825
Psp124BI GAGCTC 1 cut(s) 672
Psp6I CCWGG 2 cut(s) 550, 1207
PspGI CCWGG 2 cut(s) 550, 1207
PstI CTGCAG 2 cut(s) 498, 615
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 3 cut(s) 952, 1103, 1552
PsyI GACNNNGTC 1 cut(s) 1504
RsaI GTAC 4 cut(s) 312, 378, 419, 481
RsaNI GTAC 4 cut(s) 311, 377, 418, 480
RseI CAYNNNNRTG 7 cut(s) 40, 192, 231, 515, 1062, 1113, 1250
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 5 cut(s) 210, 369, 738, 857, 1592
SatI GCNGC 2 cut(s) 96, 842
Sau3AI GATC 6 cut(s) 278, 436, 952, 1103, 1372, 1552
SchI GAGTC 1 cut(s) 843
ScrFI CCNGG 2 cut(s) 552, 1209
SduI GDGCHC 2 cut(s) 672, 907
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 2 cut(s) 453, 691
SfcI CTRYAG 2 cut(s) 494, 611
Sfr274I CTCGAG 1 cut(s) 1467
SlaI CTCGAG 1 cut(s) 1467
SmiMI CAYNNNNRTG 7 cut(s) 40, 192, 231, 515, 1062, 1113, 1250
SmlI CTYRAG 2 cut(s) 323, 1467
SmoI CTYRAG 2 cut(s) 323, 1467
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 2 cut(s) 445, 1524
SspMI CTAG 5 cut(s) 506, 641, 665, 956, 1038
SstI GAGCTC 1 cut(s) 672
StuI AGGCCT 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 550, 1207
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 3 cut(s) 268, 285, 571
TaiI ACGT 1 cut(s) 295
TaqI TCGA 7 cut(s) 6, 566, 672, 765, 1278, 1468, 1584
TatI WGTACW 2 cut(s) 376, 417
TfiI GAWTC 5 cut(s) 152, 500, 1118, 1475, 1581
Tru1I TTAA 5 cut(s) 210, 369, 738, 857, 1592
Tru9I TTAA 5 cut(s) 210, 369, 738, 857, 1592
TscAI CASTG 3 cut(s) 543, 1147, 1252
TseFI GTSAC 4 cut(s) 233, 455, 828, 1097
TseI GCWGC 2 cut(s) 95, 841
Tsp45I GTSAC 4 cut(s) 233, 455, 828, 1097
TspDTI ATGAA 7 cut(s) 149, 504, 879, 1008, 1149, 1245, 1554
TspRI CASTG 3 cut(s) 543, 1147, 1252
Tth111I GACNNNGTC 1 cut(s) 1504
Van91I CCANNNNNTGG 1 cut(s) 1577
XapI RAATTY 3 cut(s) 166, 244, 578
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 2 cut(s) 829, 1277
XcmI CCANNNNNNNNNTGG 1 cut(s) 1376
XhoI CTCGAG 1 cut(s) 1467
XspI CTAG 5 cut(s) 506, 641, 665, 956, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.