Rw3G025050

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
32826244 .. 32829376
3133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025050.1

Sequence Viewer

Length: 1890 bp
ATGGAAAACGTTGTGTTCTACCAAACGGATTGCGAGACCCTTTGGTCTCAGATTAAATGCAAAGAGAAGCAGATTCAACTCAAACGGAGGTGGTTGTTGGGTCTTCCTCTCTCTGAATCTGAGCACAACCTGTTTCAAAGTCCTGACCTTGAACGAGATTCATTGCCGGAATCTTTGCTCAGGGAAGATGATCTGTTCTATGAGACTGCAAAGTCTTCTGTTCAAGCAGCCTTTGGAGCCTGCAATGTTGAAGCAGGGAAGCAAGATAATATTCTAATGCTCGACAGAAGAAGTATATCCACAGCCTTGTCATCGCCATGTCTTGATGATTTGACTACTAAGGGGCTTCACCTTATAGCTACTACACTTGCAGCAGGTTCAGTCAAGTTTGAGAACACTAGTTGCGAGATGAAGAAGTTTATCAGAGAATCTCTGCAAAAAAAATTTAGAAGCCAAAATAATCATGACGATGAGTTGGTCATTTTAAAGCAACTATCTCAACATCTTAGTGACCCACAAAATTTCCGAGATAAGGTTGTTACCGTTCTTTCCAGATCACAGTCTCAACGTCTTGCTGTTAGAAAGGTACTGGATGGACTTGAGGACTTGCCTTCTGAGACCCTATTTGCAATGAGCAGAAAGCTTAAAGGAGTACAACATTTACCTCAGTTACATCAAAAGAAAAATACATTGTACAAAAAGACTTTGATTGATCAATTGCGGAAAACTTGTGACACGATGCTTTCCGAACTTGGTACAGGAGATGAACTGCAGGAATCACTAGCCAAAGCCATGGCAGTAGCAGGCCTATCAGTGAAGTTACAACCAGGTCTCCATAATTCGACTGTAACAGAATTTCACCGATTTTCACAAGAGATAAAGATACTGCAGGATGATATTGCAAGGGCTATTTGGCTAGTTGAAAAAAAGGTTAGCTTGCTAGAGCTCGAAAAGTTGAAGACTATTTTAGGCCGAGATGCTGAAGTATCAAACAGGAGCTTACGATATGCAATTAAGAAAATGCTAACTGAATATCTCTTCGAGTGTGGTGATATGGATACAATTCCGAAGTCATTATTAGAAGCTCTTGATATTATCAACATGTCACGAAACAAGCTGCATAGACTCTTCTTAAAGGATGAAATTGAAGAAGAGGTGGAATGTATATTGAATGTGAGTGCTCAGGCAAAGCAGATTGTATGGGATATGTTCCCCGACCATGAGTTAGATCTAGACTTTGCTGAGGCATATGTTGAGGAAATGGAGGATGAAGACGATGATGAGGATGACGATGATGATGGTGATGATAGGTCTAGCAATGATGATAACAACCATAATCATGGTTCGCCACAGGAACAAGGAATATCTGGAAGTGACAGATCTCACTCTGATGATTCACATTATGAGGATGAAAGCACTGGGGAAACAATGTTCTCCAATCAAGGAACTTCTCATGATTTCAATGGTATTAGACGAGGGTTTCCTGGGACTTCTACTGAGAGACATGAACCTGAACATGACACTGGAATGGATACAGATGACCCTTTGCATGTCGAGCCAGAGCCAGATGATGTGCATAAACAAACCACTTGTAACCAATACCTTGCAATTCAAGAAGTGTCTGATAAGACAAGCATGATAGCCCATGATCTTGTTGGTCATATGTTGGAGGAGTTTGCACAGAAAGATGGCTTGGATTTGGACTGGGATGATACATTATATCTGAAAGGTGATTGTGCAACTCGAGAAGATTCAGGAGTGGTAGAAGAAAGGCAGACATTGTCTCAGGAGAACAAAGGCGGTTCTGTAATTGTTAGTGTAATTGAGGATCTAATACCTTCATTTCCAAAGAGTGGAATCGAAGCATTAAGGAACTTGGTGGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

629

Amino Acids

71.29

Weight (kDa)

4.74

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 43, 211
Acc36I ACCTGC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 1853
AciI CCGC 2 cut(s) 721, 1800
AclI AACGTT 1 cut(s) 9
AclWI GGATC 1 cut(s) 1836
AcsI RAATTY 3 cut(s) 443, 520, 854
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 4 cut(s) 588, 654, 695, 757
AfiI CCNNNNNNNGG 2 cut(s) 532, 1853
AflIII ACRYGT 1 cut(s) 1101
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 2 cut(s) 826, 1483
AjuI GAANNNNNNNTTGG 2 cut(s) 1676, 1708
AloI GAACNNNNNNTCC 2 cut(s) 1415, 1447
AluBI AGCT 7 cut(s) 359, 643, 936, 946, 999, 1085, 1117
AluI AGCT 7 cut(s) 359, 643, 936, 946, 999, 1085, 1117
Alw21I GWGCWC 3 cut(s) 126, 948, 1183
Alw26I GTCTC 8 cut(s) 29, 51, 197, 567, 611, 836, 1495, 1788
AlwI GGATC 1 cut(s) 1836
Ama87I CYCGRG 1 cut(s) 1743
AoxI GGCC 2 cut(s) 805, 970
ApeKI GCWGC 3 cut(s) 227, 371, 1117
ApoI RAATTY 3 cut(s) 443, 520, 854
AsuHPI GGTGA 5 cut(s) 341, 851, 1061, 1313, 1742
AvaI CYCGRG 1 cut(s) 1743
BanII GRGCYC 1 cut(s) 948
BbsI GAAGAC 4 cut(s) 95, 207, 965, 1278
Bbv12I GWGCWC 3 cut(s) 126, 948, 1183
BbvCI CCTCAGC 1 cut(s) 1242
BbvI GCAGC 3 cut(s) 239, 383, 1104
BccI CCATC 3 cut(s) 587, 1292, 1682
BciT130I CCWGG 2 cut(s) 828, 1485
BciVI GTATCC 2 cut(s) 1051, 1525
BclI TGATCA 1 cut(s) 712
BcoDI GTCTC 8 cut(s) 29, 51, 197, 567, 611, 836, 1495, 1788
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 6 cut(s) 399, 782, 917, 941, 1232, 1314
BfmI CTRYAG 2 cut(s) 770, 887
BfuAI ACCTGC 1 cut(s) 365
BfuI GTATCC 2 cut(s) 1051, 1525
BglII AGATCT 2 cut(s) 1228, 1379
BisI GCNGC 3 cut(s) 228, 372, 1118
BlsI GCNGC 3 cut(s) 229, 373, 1119
Bme1390I CCNGG 2 cut(s) 828, 1485
BmeT110I CYCGRG 1 cut(s) 1743
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 828, 1485
BmrI ACTGGG 2 cut(s) 1428, 1714
BmsI GCATC 2 cut(s) 729, 967
BmuI ACTGGG 2 cut(s) 1428, 1714
BpiI GAAGAC 4 cut(s) 95, 207, 965, 1278
Bpu10I CCTNAGC 3 cut(s) 179, 1182, 1242
BpuEI CTTGAG 1 cut(s) 620
BsaI GGTCTC 4 cut(s) 29, 51, 611, 836
BsaJI CCNNGG 2 cut(s) 792, 1484
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 1853
Bse1I ACTGG 4 cut(s) 594, 1423, 1528, 1709
Bse3DI GCAATG 4 cut(s) 161, 250, 636, 1324
BseBI CCWGG 2 cut(s) 828, 1485
BseDI CCNNGG 2 cut(s) 792, 1484
BseGI GGATG 7 cut(s) 598, 898, 1144, 1273, 1291, 1414, 1714
BseLI CCNNNNNNNGG 2 cut(s) 532, 1853
BseMI GCAATG 4 cut(s) 161, 250, 636, 1324
BseMII CTCAG 9 cut(s) 62, 111, 193, 606, 680, 1196, 1233, 1488, 1799
BseNI ACTGG 4 cut(s) 594, 1423, 1528, 1709
BseRI GAGGAG 1 cut(s) 1685
BseXI GCAGC 3 cut(s) 239, 383, 1104
BshFI GGCC 2 cut(s) 807, 972
BsiHKAI GWGCWC 3 cut(s) 126, 948, 1183
BsiHKCI CYCGRG 1 cut(s) 1743
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 1501
BslI CCNNNNNNNGG 2 cut(s) 532, 1853
BsmAI GTCTC 8 cut(s) 29, 51, 197, 567, 611, 836, 1495, 1788
BsmFI GGGAC 1 cut(s) 1501
BsnI GGCC 2 cut(s) 807, 972
Bso31I GGTCTC 4 cut(s) 29, 51, 611, 836
BsoBI CYCGRG 1 cut(s) 1743
Bsp1286I GDGCHC 3 cut(s) 126, 948, 1183
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
Bsp19I CCATGG 1 cut(s) 792
BspACI CCGC 2 cut(s) 721, 1800
BspANI GGCC 2 cut(s) 807, 972
BspCNI CTCAG 9 cut(s) 61, 112, 192, 607, 679, 1195, 1234, 1489, 1798
BspHI TCATGA 2 cut(s) 463, 1453
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 2 cut(s) 774, 891
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 1836
BspTNI GGTCTC 4 cut(s) 29, 51, 611, 836
BsrDI GCAATG 4 cut(s) 161, 250, 636, 1324
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 4 cut(s) 594, 1423, 1528, 1709
BssECI CCNNGG 2 cut(s) 792, 1484
BssMI GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 2 cut(s) 828, 1485
Bst4CI ACNGT 3 cut(s) 544, 561, 847
Bst6I CTCTTC 3 cut(s) 1043, 1133, 1146
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 3 cut(s) 241, 805, 938
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 7 cut(s) 598, 898, 1144, 1273, 1291, 1414, 1714
BstKTI GATC 7 cut(s) 193, 557, 715, 1231, 1382, 1651, 1831
BstMAI GTCTC 8 cut(s) 29, 51, 197, 567, 611, 836, 1495, 1788
BstMBI GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
BstMWI GCNNNNNNNGC 2 cut(s) 236, 1555
BstNI CCWGG 2 cut(s) 828, 1485
BstNSI RCATGY 2 cut(s) 1105, 1553
BstSCI CCNGG 2 cut(s) 826, 1483
BstSFI CTRYAG 2 cut(s) 770, 887
BstV1I GCAGC 3 cut(s) 239, 383, 1104
BstV2I GAAGAC 4 cut(s) 95, 207, 965, 1278
BstX2I RGATCY 3 cut(s) 1228, 1379, 1828
BstXI CCANNNNNNTGG 2 cut(s) 793, 1340
BstYI RGATCY 3 cut(s) 1228, 1379, 1828
BsuI GTATCC 2 cut(s) 1051, 1525
BsuRI GGCC 2 cut(s) 807, 972
BtgI CCRYGG 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 7 cut(s) 598, 898, 1144, 1273, 1291, 1414, 1714
BtsIMutI CAGTG 3 cut(s) 819, 1416, 1521
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 241, 805, 938
CciI TCATGA 2 cut(s) 463, 1453
CsiI ACCWGGT 1 cut(s) 826
Csp6I GTAC 4 cut(s) 587, 653, 694, 756
CviQI GTAC 4 cut(s) 587, 653, 694, 756
DpnI GATC 7 cut(s) 192, 556, 714, 1230, 1381, 1650, 1830
DpnII GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
DraI TTTAAA 1 cut(s) 486
DrdI GACNNNNNNGTC 2 cut(s) 43, 211
DseDI GACNNNNNNGTC 2 cut(s) 43, 211
Eam1104I CTCTTC 3 cut(s) 1043, 1133, 1146
EarI CTCTTC 3 cut(s) 1043, 1133, 1146
Ecl136II GAGCTC 1 cut(s) 946
Eco130I CCWWGG 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 948
Eco31I GGTCTC 4 cut(s) 29, 51, 611, 836
Eco53kI GAGCTC 1 cut(s) 946
Eco57I CTGAAG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 1743
EcoICRI GAGCTC 1 cut(s) 946
EcoRII CCWGG 2 cut(s) 826, 1483
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 948
ErhI CCWWGG 1 cut(s) 792
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FaqI GGGAC 1 cut(s) 1501
FauNDI CATATG 2 cut(s) 1249, 1662
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 3 cut(s) 228, 372, 1118
FokI GGATG 7 cut(s) 605, 905, 1151, 1280, 1298, 1421, 1721
FriOI GRGCYC 1 cut(s) 948
Fsp4HI GCNGC 3 cut(s) 228, 372, 1118
FspBI CTAG 6 cut(s) 399, 782, 917, 941, 1232, 1314
GluI GCNGC 3 cut(s) 228, 372, 1118
HaeIII GGCC 2 cut(s) 807, 972
HapII CCGG 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 641
HpaII CCGG 1 cut(s) 167
HphI GGTGA 5 cut(s) 341, 851, 1061, 1313, 1742
HpyAV CCTTC 2 cut(s) 621, 1848
HpyCH4III ACNGT 3 cut(s) 544, 561, 847
HpyCH4IV ACGT 2 cut(s) 9, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 1555
HpySE526I ACGT 2 cut(s) 9, 568
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
LmnI GCTCC 2 cut(s) 236, 996
Lsp1109I GCAGC 3 cut(s) 239, 383, 1104
LweI GCATC 2 cut(s) 729, 967
MabI ACCWGGT 1 cut(s) 826
MaeI CTAG 6 cut(s) 399, 782, 917, 941, 1232, 1314
MaeII ACGT 2 cut(s) 9, 568
MaeIII GTNAC 9 cut(s) 509, 538, 669, 731, 819, 847, 1104, 1373, 1592
MalI GATC 7 cut(s) 192, 556, 714, 1230, 1381, 1650, 1830
MboI GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 3 cut(s) 1228, 1379, 1828
MhlI GDGCHC 3 cut(s) 126, 948, 1183
MlyI GAGTC 1 cut(s) 1119
MmeI TCCRAC 1 cut(s) 1647
MseI TTAA 6 cut(s) 54, 485, 645, 1014, 1133, 1868
MslI CAYNNNNRTG 6 cut(s) 316, 468, 507, 1338, 1389, 1526
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 828, 1485
MunI CAATTG 1 cut(s) 716
MvaI CCWGG 2 cut(s) 828, 1485
MwoI GCNNNNNNNGC 2 cut(s) 236, 1555
NcoI CCATGG 1 cut(s) 792
NdeI CATATG 2 cut(s) 1249, 1662
NdeII GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
NlaIV GGNNCC 1 cut(s) 238
NmeAIII GCCGAG 1 cut(s) 998
NmuCI GTSAC 4 cut(s) 509, 731, 1104, 1373
NspI RCATGY 2 cut(s) 1105, 1553
PaeR7I CTCGAG 1 cut(s) 1743
PagI TCATGA 2 cut(s) 463, 1453
PceI AGGCCT 1 cut(s) 807
PciI ACATGT 1 cut(s) 1101
PfeI GAWTC 9 cut(s) 73, 116, 158, 170, 428, 776, 1394, 1751, 1857
PflFI GACNNNGTC 1 cut(s) 1780
PflMI CCANNNNNTGG 1 cut(s) 1853
PkrI GCNGC 3 cut(s) 229, 373, 1119
PleI GAGTC 1 cut(s) 1119
PpsI GAGTC 1 cut(s) 1119
PscI ACATGT 1 cut(s) 1101
Psp124BI GAGCTC 1 cut(s) 948
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 826, 1483
PspGI CCWGG 2 cut(s) 826, 1483
PspN4I GGNNCC 1 cut(s) 238
PstI CTGCAG 2 cut(s) 774, 891
PsuI RGATCY 3 cut(s) 1228, 1379, 1828
PsyI GACNNNGTC 1 cut(s) 1780
RsaI GTAC 4 cut(s) 588, 654, 695, 757
RsaNI GTAC 4 cut(s) 587, 653, 694, 756
RseI CAYNNNNRTG 6 cut(s) 316, 468, 507, 1338, 1389, 1526
SacI GAGCTC 1 cut(s) 948
SaqAI TTAA 6 cut(s) 54, 485, 645, 1014, 1133, 1868
SatI GCNGC 3 cut(s) 228, 372, 1118
Sau3AI GATC 7 cut(s) 190, 554, 712, 1228, 1379, 1648, 1828
SchI GAGTC 1 cut(s) 1119
ScrFI CCNGG 2 cut(s) 828, 1485
SduI GDGCHC 3 cut(s) 126, 948, 1183
SexAI ACCWGGT 1 cut(s) 826
SfaNI GCATC 2 cut(s) 729, 967
SfcI CTRYAG 2 cut(s) 770, 887
Sfr274I CTCGAG 1 cut(s) 1743
SlaI CTCGAG 1 cut(s) 1743
SmiMI CAYNNNNRTG 6 cut(s) 316, 468, 507, 1338, 1389, 1526
SmlI CTYRAG 2 cut(s) 599, 1743
SmoI CTYRAG 2 cut(s) 599, 1743
SpeI ACTAGT 1 cut(s) 398
SseBI AGGCCT 1 cut(s) 807
SsiI CCGC 2 cut(s) 721, 1800
SspI AATATT 1 cut(s) 271
SspMI CTAG 6 cut(s) 399, 782, 917, 941, 1232, 1314
SstI GAGCTC 1 cut(s) 948
StuI AGGCCT 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 826, 1483
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 544, 561, 847
TaiI ACGT 2 cut(s) 12, 571
TaqI TCGA 7 cut(s) 282, 842, 948, 1041, 1554, 1744, 1860
TatI WGTACW 2 cut(s) 652, 693
TfiI GAWTC 9 cut(s) 73, 116, 158, 170, 428, 776, 1394, 1751, 1857
Tru1I TTAA 6 cut(s) 54, 485, 645, 1014, 1133, 1868
Tru9I TTAA 6 cut(s) 54, 485, 645, 1014, 1133, 1868
TscAI CASTG 3 cut(s) 819, 1423, 1528
TseFI GTSAC 4 cut(s) 509, 731, 1104, 1373
TseI GCWGC 3 cut(s) 227, 371, 1117
Tsp45I GTSAC 4 cut(s) 509, 731, 1104, 1373
TspDTI ATGAA 8 cut(s) 150, 425, 780, 1155, 1284, 1425, 1521, 1830
TspGWI ACGGA 2 cut(s) 41, 100
TspRI CASTG 3 cut(s) 819, 1423, 1528
Tth111I GACNNNGTC 1 cut(s) 1780
Van91I CCANNNNNTGG 1 cut(s) 1853
XapI RAATTY 3 cut(s) 443, 520, 854
XbaI TCTAGA 1 cut(s) 1231
XceI RCATGY 2 cut(s) 1105, 1553
XcmI CCANNNNNNNNNTGG 1 cut(s) 1652
XhoI CTCGAG 1 cut(s) 1743
XspI CTAG 6 cut(s) 399, 782, 917, 941, 1232, 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.