Rorug03G0235000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003395
Physical Location & Seq
Reverse (-)
21719438 .. 21720067
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0235000.1

Sequence Viewer

Length: 495 bp
ATGATAGGGGATGGAATTGCTGTGATTGCTCAGGCAGCAGCTACTGTTGTAAATGAGGCTGCTCAAATTGCCCATATAGGCCTTTCTCTGGATATCATTGCTGACCTTATGGCTGGTAACCGCGCATTTATCTACACTGCAGTTGCTCATACCGTGGAACAAATGGTGCAAGGAAATGCAATTGCTCAGCGAATGATAGATGTATCTGATCAGATCATCCATGTTGCAGTGACAATAGCTGGGGTAAATGCTCTAGTCCAAGGGGTGGCAGAAAATCAAGAGAACGCAGAGGGTGAGGAGCCATTACATGATAATGATGCGGTTGAGGAACACATGCCTGGTGAGAATGAAGCAATTATGCAGGCTGAAGTTCAAGGCCAGGCTGAAGGGCAAGCAAATATGCAAGTTCAAGGCATGGACATACACCCAGAGCAAGGACTCCCTGACGCACCAGTTGAAGGTTATGGGCCTGATGAGGAGGATCATGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.24

Weight (kDa)

4.05

Isoelectric Point (pI)

23.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 121, 320
AclWI GGATC 1 cut(s) 489
AcuI CTGAAG 2 cut(s) 387, 405
AfiI CCNNNNNNNGG 4 cut(s) 88, 265, 434, 458
AgsI TTSAA 3 cut(s) 374, 410, 458
AjnI CCWGG 2 cut(s) 337, 378
AluBI AGCT 2 cut(s) 41, 239
AluI AGCT 2 cut(s) 41, 239
AlwI GGATC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 3 cut(s) 79, 376, 467
ApeKI GCWGC 3 cut(s) 35, 38, 59
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 305, 353
BbvI GCAGC 3 cut(s) 46, 47, 50
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 339, 380
BclI TGATCA 1 cut(s) 208
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 3 cut(s) 36, 39, 60
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 3 cut(s) 37, 40, 61
Bme1390I CCNGG 2 cut(s) 339, 380
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 2 cut(s) 339, 380
BmsI GCATC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 153, 259
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 265, 434, 458
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 2 cut(s) 339, 380
BseDI CCNNGG 2 cut(s) 153, 259
BseGI GGATG 2 cut(s) 16, 216
BseLI CCNNNNNNNGG 4 cut(s) 88, 265, 434, 458
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 44, 200
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 2 cut(s) 311, 491
BseXI GCAGC 3 cut(s) 46, 47, 50
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 81, 378, 469
BslI CCNNNNNNNGG 4 cut(s) 88, 265, 434, 458
BsnI GGCC 3 cut(s) 81, 378, 469
Bsp143I GATC 3 cut(s) 208, 213, 481
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 2 cut(s) 121, 320
BspANI GGCC 3 cut(s) 81, 378, 469
BspCNI CTCAG 2 cut(s) 43, 199
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 142
BspPI GGATC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 2 cut(s) 153, 259
BssMI GATC 3 cut(s) 208, 213, 481
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 339, 380
Bst4CI ACNGT 2 cut(s) 46, 154
BstC8I GCNNGC 2 cut(s) 363, 393
BstDEI CTNAG 2 cut(s) 30, 186
BstDSI CCRYGG 1 cut(s) 153
BstEII GGTNACC 1 cut(s) 116
BstF5I GGATG 2 cut(s) 16, 216
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 3 cut(s) 211, 216, 484
BstMBI GATC 3 cut(s) 208, 213, 481
BstMWI GCNNNNNNNGC 3 cut(s) 26, 35, 68
BstNI CCWGG 2 cut(s) 339, 380
BstNSI RCATGY 1 cut(s) 337
BstPI GGTNACC 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 337, 378
BstSFI CTRYAG 1 cut(s) 138
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 46, 47, 50
BsuRI GGCC 3 cut(s) 81, 378, 469
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 16, 216
BtsI GCAGTG 2 cut(s) 135, 234
BtsIMutI CAGTG 2 cut(s) 135, 234
Cac8I GCNNGC 2 cut(s) 363, 393
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 1 cut(s) 455
CviAII CATG 5 cut(s) 221, 308, 334, 415, 485
DdeI CTNAG 2 cut(s) 30, 186
DpnI GATC 3 cut(s) 210, 215, 483
DpnII GATC 3 cut(s) 208, 213, 481
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 81
Eco32I GATATC 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 387, 405
Eco91I GGTNACC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 337, 378
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 5 cut(s) 224, 311, 337, 418, 488
FatI CATG 5 cut(s) 220, 307, 333, 414, 484
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 36, 39, 60
FokI GGATG 2 cut(s) 23, 203
Fsp4HI GCNGC 3 cut(s) 36, 39, 60
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 36, 39, 60
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 3 cut(s) 81, 378, 469
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 125
Hin1II CATG 5 cut(s) 224, 311, 337, 418, 488
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 1 cut(s) 438
HphI GGTGA 2 cut(s) 305, 353
Hpy188I TCNGA 2 cut(s) 208, 213
Hpy188III TCNNGA 2 cut(s) 89, 278
HpyAV CCTTC 2 cut(s) 380, 452
HpyCH4III ACNGT 2 cut(s) 46, 154
HpyCH4V TGCA 6 cut(s) 140, 169, 179, 227, 361, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 35, 68
HpyF3I CTNAG 2 cut(s) 30, 186
Hsp92II CATG 5 cut(s) 224, 311, 337, 418, 488
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 208, 213, 481
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 3 cut(s) 46, 47, 50
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 116, 229
MalI GATC 3 cut(s) 210, 215, 483
MboI GATC 3 cut(s) 208, 213, 481
MfeI CAATTG 1 cut(s) 180
MluCI AATT 4 cut(s) 15, 66, 180, 354
MlyI GAGTC 1 cut(s) 432
MnlI CCTC 6 cut(s) 49, 283, 289, 319, 469, 472
MslI CAYNNNNRTG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 339, 380
MunI CAATTG 1 cut(s) 180
MvaI CCWGG 2 cut(s) 339, 380
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 26, 35, 68
NdeII GATC 3 cut(s) 208, 213, 481
NlaIII CATG 5 cut(s) 224, 311, 337, 418, 488
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 337
PceI AGGCCT 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 3 cut(s) 37, 40, 61
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 337, 378
PspEI GGTNACC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 337, 378
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 467
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 312
SatI GCNGC 3 cut(s) 36, 39, 60
Sau3AI GATC 3 cut(s) 208, 213, 481
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 2 cut(s) 339, 380
SetI ASST 4 cut(s) 43, 108, 241, 463
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 4 cut(s) 15, 66, 180, 354
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 2 cut(s) 121, 320
SspMI CTAG 1 cut(s) 254
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 337, 378
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 46, 154
TasI AATT 4 cut(s) 15, 66, 180, 354
TscAI CASTG 2 cut(s) 142, 234
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 3 cut(s) 35, 38, 59
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 2 cut(s) 142, 234
Van91I CCANNNNNTGG 1 cut(s) 265
XceI RCATGY 1 cut(s) 337
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.