MD04G1046800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
5440774 .. 5445435
4662 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1046800.v1.1.491

Sequence Viewer

Length: 1968 bp
ATGGAGGAAGACTTTGAGATTTACAACACGGATAACGGTTCTATTTGGTCACAAATTAAACACCAAGAGAAGCAGATTCAACTCAAAAGGAGGTGGTTGTTGGGGCTTCCTGCTTCCAATGCTGAGCAGAAGAAGTTTGAGAATCCTGAGCTTTTAGAAAACAAGGCGTTGCCCGAATCGTTTCTTAGGGAAGACGATATGTTCTATGAAGTTGCAAAGTCTTGTGTTGATGCAGCCTTGGGAGGATGTGAAGTTGGAGGGAATCGAGTATTTCAAGATGATATACAATTGTTTGACACACCAAATATATCCAGGGTCTTGTCATCGTGCCTTGATGACTTGACTAACAAGGGGCTTTACCTTTTTGCTTTGAAACTAACAGGAGGCTCAGCCAAGTTTGAGAAAACTCGTTGGAAGATGAAAAAGGTTATCAGAGAATCTTTGCCTAAAGTTTTTGGAAGCCAAGATAAAGTGGAAATTTCTCAATATCTTTCTCAACTTCTCAATGACCCACAATATTTCCGAGATAATTTTATCACAGTTCTATCCTCCAGATCACAATCTAATCGTGCTGCCGCTAGAAAGCTGTTGGATAGACTCCCGGACATGCCTCTTGAGACCCTAATTGCAATGAACAAAAAGCTTAGAGGGCGACAAAGTCTGCCTCAACTACGGTCTAAAAAAAGTGGATGGAATCGAGATAGACTAATTAATCAAGTGAGGGAAACAAGTGAGGAGATGCTCACAGAACTTGGCATAGGTAATGAACTGCAGCAGCCATTAGCCAGAGCCTTGGCAGTAGTAGGCTTATCAATGAAGCTAATACCAGGTTTTCATAATTCCACCGCAACAGAGTTTCACCAATTCTCGCCAGAAATAAAGATATTGCAGGATGAGATAGCTAGAGCTATTTGGTTAGTGAAGACAAAGATTACAATACCAGAGCTGAAAAACTTGAAGATTCTGCTGGACCCGAATGCTAAAGTATCCAACAGGAGTTTGCGGAGAGCAATTAGGAAAATGCTAACTGAATTTCTTTTCGAGTGTGGTGATATGGATACCATTCCCAAGTCTTTATTAGAAGCACTTGTTTTTATCAATAGGAATTCCCAAAGTAAATCGGATAGACGCATCCTAAAGGATGAAATTGAAGAAGAGGTAGAATGCATATTGAATGTGAGTGCTCAGATAAAGCAGGTTATTTGGGATACGTTTCCTGATCATGACTTGGATGTAGATTTCTCTGATGCGTATATGGAAGAAATGGAAGAAAGTGATGATAATGATGATGATGACGACGGCGACGATAATATCGACAACAAGGGTTGGCTTGAGGAAGATAGAATATCTGGAAGTGAGAGATCTCATTCTAATGATTCGTATGGTGAAGTTGAAAGTACTGGGGAGTCAATGCCATCTTTTTGCAAGCCACCTACTGCTAATACTACCCCTAATTGCAGTTATCCCCTCCTTACATCTCACAACAATGAGCGACTTGAACATATGCTCTCCACCCAAGCTGATTCTGTAGACTGCGGTGGTATCAGAACAGGGTTTGATGGAAATTTCAATGAGAGACATGAACCTGAATGTAATACTGGAATGGATACAGAAAACTCGCTGCATCTTGACCCAGAAGGGGCGCTTAATAAGCAAACTACTTGTAAGAATGAATACCTTGCCGTCCAAGAGGTATGTGATGAGACAAGCATGATTGCATATAATCTCATTGGTCATATGTTGGATGATTTTGCACAGAGAGAAGGATTGGGTTTAGACTGGGATGATTGTTTATATCTCAGAGGCAATTGTGCAGCTCAAGAAGATTATCAAGAGGTAGAAGAAAAACGGACATTTGCTCAGGAAAACGATGATGGTACAATAATTGTTCGAGTAATTGAGGATCTAATACCCTCTTTTCCAAAAAGTGGAATAGAAGCATTAAAGAAGTTGATGGGCCTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

656

Amino Acids

74.55

Weight (kDa)

4.75

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1186
AccB7I CCANNNNNTGG 1 cut(s) 1928
AccI GTMKAC 1 cut(s) 1530
AciI CCGC 4 cut(s) 576, 846, 1003, 1536
AclWI GGATC 1 cut(s) 1911
AcsI RAATTY 4 cut(s) 477, 1031, 1105, 1564
AfaI GTAC 2 cut(s) 1399, 1879
AfiI CCNNNNNNNGG 2 cut(s) 1639, 1928
AgsI TTSAA 9 cut(s) 80, 275, 373, 958, 1151, 1174, 1394, 1499, 1570
AjnI CCWGG 2 cut(s) 311, 826
AluBI AGCT 9 cut(s) 151, 586, 643, 820, 902, 908, 946, 1520, 1817
AluI AGCT 9 cut(s) 151, 586, 643, 820, 902, 908, 946, 1520, 1817
Alw21I GWGCWC 1 cut(s) 1186
Alw26I GTCTC 3 cut(s) 611, 1570, 1697
AlwI GGATC 1 cut(s) 1911
AoxI GGCC 1 cut(s) 1957
ApeKI GCWGC 6 cut(s) 233, 572, 772, 775, 1621, 1814
ApoI RAATTY 4 cut(s) 477, 1031, 1105, 1564
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 1645
AspS9I GGNCC 2 cut(s) 970, 1957
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 3 cut(s) 851, 1061, 1397
AvaII GGWCC 1 cut(s) 970
BbsI GAAGAC 3 cut(s) 15, 198, 929
Bbv12I GWGCWC 1 cut(s) 1186
BbvI GCAGC 6 cut(s) 245, 559, 784, 787, 1608, 1826
BccI CCATC 5 cut(s) 684, 1423, 1553, 1868, 1948
BceAI ACGGC 2 cut(s) 1315, 1667
BciT130I CCWGG 2 cut(s) 313, 828
BciVI GTATCC 4 cut(s) 997, 1051, 1201, 1600
BclI TGATCA 1 cut(s) 1219
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 3 cut(s) 611, 1570, 1697
BfaI CTAG 2 cut(s) 579, 903
BfmI CTRYAG 3 cut(s) 770, 1527, 1964
BfoI RGCGCY 1 cut(s) 1646
BfuAI ACCTGC 1 cut(s) 1186
BfuI GTATCC 4 cut(s) 997, 1051, 1201, 1600
BglII AGATCT 1 cut(s) 1361
BisI GCNGC 7 cut(s) 234, 573, 576, 773, 776, 1622, 1815
BlpI GCTNAGC 2 cut(s) 123, 388
BlsI GCNGC 7 cut(s) 235, 574, 577, 774, 777, 1623, 1816
BmcAI AGTACT 1 cut(s) 1399
Bme1390I CCNGG 3 cut(s) 313, 602, 828
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 970, 1957
BmiI GGNNCC 1 cut(s) 972
BmrFI CCNGG 3 cut(s) 313, 602, 828
BmrI ACTGGG 2 cut(s) 1410, 1789
BmsI GCATC 5 cut(s) 220, 729, 1140, 1237, 1633
BmuI ACTGGG 2 cut(s) 1410, 1789
BpiI GAAGAC 3 cut(s) 15, 198, 929
BpmI CTGGAG 1 cut(s) 535
Bpu10I CCTNAGC 2 cut(s) 147, 1860
Bpu1102I GCTNAGC 2 cut(s) 123, 388
BpuEI CTTGAG 3 cut(s) 635, 1352, 1803
BpuMI CCSGG 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 559
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 3 cut(s) 237, 312, 792
Bsc4I CCNNNNNNNGG 2 cut(s) 1639, 1928
Bse1I ACTGG 3 cut(s) 1405, 1603, 1784
Bse3DI GCAATG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 559
BseBI CCWGG 2 cut(s) 313, 828
BseDI CCNNGG 3 cut(s) 237, 312, 792
BseGI GGATG 8 cut(s) 251, 695, 898, 1131, 1147, 1237, 1750, 1789
BseJI GATNNNNATC 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 1639, 1928
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 6 cut(s) 114, 138, 402, 1199, 1813, 1874
BseNI ACTGG 3 cut(s) 1405, 1603, 1784
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 6 cut(s) 245, 559, 784, 787, 1608, 1826
BsgI GTGCAG 1 cut(s) 1833
BshFI GGCC 1 cut(s) 1959
BsiHKAI GWGCWC 1 cut(s) 1186
BsiSI CCGG 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 1639, 1928
BsmAI GTCTC 3 cut(s) 611, 1570, 1697
BsmI GAATGC 2 cut(s) 982, 1169
BsnI GGCC 1 cut(s) 1959
Bso31I GGTCTC 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 1186
Bsp143I GATC 4 cut(s) 554, 1219, 1361, 1903
Bsp1720I GCTNAGC 2 cut(s) 123, 388
BspACI CCGC 4 cut(s) 576, 846, 1003, 1536
BspANI GGCC 1 cut(s) 1959
BspCNI CTCAG 6 cut(s) 115, 139, 401, 1198, 1812, 1873
BspHI TCATGA 1 cut(s) 1222
BspLI GGNNCC 1 cut(s) 972
BspMAI CTGCAG 1 cut(s) 774
BspMI ACCTGC 1 cut(s) 1186
BspPI GGATC 1 cut(s) 1911
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 3 cut(s) 1405, 1603, 1784
BssECI CCNNGG 3 cut(s) 237, 312, 792
BssMI GATC 4 cut(s) 554, 1219, 1361, 1903
BssT1I CCWWGG 2 cut(s) 237, 792
Bst2UI CCWGG 2 cut(s) 313, 828
Bst4CI ACNGT 3 cut(s) 38, 541, 675
Bst6I CTCTTC 1 cut(s) 1149
BstC8I GCNNGC 1 cut(s) 1427
BstDEI CTNAG 8 cut(s) 123, 147, 185, 388, 644, 1185, 1799, 1860
BstF5I GGATG 8 cut(s) 251, 695, 898, 1131, 1147, 1237, 1750, 1789
BstH2I RGCGCY 1 cut(s) 1646
BstHHI GCGC 1 cut(s) 1645
BstKTI GATC 4 cut(s) 557, 1222, 1364, 1906
BstMAI GTCTC 3 cut(s) 611, 1570, 1697
BstMBI GATC 4 cut(s) 554, 1219, 1361, 1903
BstMWI GCNNNNNNNGC 3 cut(s) 119, 649, 1651
BstNI CCWGG 2 cut(s) 313, 828
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 311, 600, 826
BstSFI CTRYAG 3 cut(s) 770, 1527, 1964
BstV1I GCAGC 6 cut(s) 245, 559, 784, 787, 1608, 1826
BstV2I GAAGAC 3 cut(s) 15, 198, 929
BstX2I RGATCY 2 cut(s) 1361, 1903
BstXI CCANNNNNNTGG 1 cut(s) 793
BstYI RGATCY 2 cut(s) 1361, 1903
BsuI GTATCC 4 cut(s) 997, 1051, 1201, 1600
BsuRI GGCC 1 cut(s) 1959
BtsCI GGATG 8 cut(s) 251, 695, 898, 1131, 1147, 1237, 1750, 1789
BveI ACCTGC 1 cut(s) 1186
Cac8I GCNNGC 1 cut(s) 1427
CciI TCATGA 1 cut(s) 1222
CfoI GCGC 1 cut(s) 1645
Cfr13I GGNCC 2 cut(s) 970, 1957
CseI GACGC 1 cut(s) 1137
CsiI ACCWGGT 1 cut(s) 826
Csp6I GTAC 2 cut(s) 1398, 1878
CviAII CATG 4 cut(s) 607, 1223, 1580, 1711
CviQI GTAC 2 cut(s) 1398, 1878
DdeI CTNAG 8 cut(s) 123, 147, 185, 388, 644, 1185, 1799, 1860
DpnI GATC 4 cut(s) 556, 1221, 1363, 1905
DpnII GATC 4 cut(s) 554, 1219, 1361, 1903
Eam1104I CTCTTC 1 cut(s) 1149
EarI CTCTTC 1 cut(s) 1149
Eco130I CCWWGG 2 cut(s) 237, 792
Eco31I GGTCTC 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 970
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 2 cut(s) 311, 826
EcoT14I CCWWGG 2 cut(s) 237, 792
EcoT22I ATGCAT 1 cut(s) 1169
ErhI CCWWGG 2 cut(s) 237, 792
FaeI CATG 4 cut(s) 610, 1226, 1583, 1714
FalI AAGNNNNNCTT 2 cut(s) 1629, 1661
FatI CATG 4 cut(s) 606, 1222, 1579, 1710
FauNDI CATATG 2 cut(s) 1503, 1737
FbaI TGATCA 1 cut(s) 1219
FblI GTMKAC 1 cut(s) 1530
Fnu4HI GCNGC 7 cut(s) 234, 573, 576, 773, 776, 1622, 1815
FokI GGATG 8 cut(s) 258, 702, 905, 1118, 1154, 1244, 1757, 1796
Fsp4HI GCNGC 7 cut(s) 234, 573, 576, 773, 776, 1622, 1815
FspBI CTAG 2 cut(s) 579, 903
GlaI GCGC 1 cut(s) 1644
GluI GCNGC 7 cut(s) 234, 573, 576, 773, 776, 1622, 1815
GsuI CTGGAG 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 1646
HaeIII GGCC 1 cut(s) 1959
HapII CCGG 1 cut(s) 602
HgaI GACGC 1 cut(s) 1137
HhaI GCGC 1 cut(s) 1645
Hin1II CATG 4 cut(s) 610, 1226, 1583, 1714
Hin6I GCGC 1 cut(s) 1643
HinP1I GCGC 1 cut(s) 1643
HindIII AAGCTT 1 cut(s) 641
HpaII CCGG 1 cut(s) 602
HphI GGTGA 3 cut(s) 851, 1061, 1397
Hpy166II GTNNAC 1 cut(s) 1531
Hpy188I TCNGA 7 cut(s) 434, 524, 1123, 1188, 1246, 1547, 1802
Hpy8I GTNNAC 1 cut(s) 1531
Hpy99I CGWCG 2 cut(s) 1301, 1307
HpyAV CCTTC 2 cut(s) 1631, 1757
HpyCH4III ACNGT 3 cut(s) 38, 541, 675
HpyCH4IV ACGT 1 cut(s) 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 649, 1651
HpyF3I CTNAG 8 cut(s) 123, 147, 185, 388, 644, 1185, 1799, 1860
HpySE526I ACGT 1 cut(s) 1211
Hsp92II CATG 4 cut(s) 610, 1226, 1583, 1714
HspAI GCGC 1 cut(s) 1643
Ksp22I TGATCA 1 cut(s) 1219
Kzo9I GATC 4 cut(s) 554, 1219, 1361, 1903
Lsp1109I GCAGC 6 cut(s) 245, 559, 784, 787, 1608, 1826
LweI GCATC 5 cut(s) 220, 729, 1140, 1237, 1633
MabI ACCWGGT 1 cut(s) 826
MaeI CTAG 2 cut(s) 579, 903
MaeII ACGT 1 cut(s) 1211
MaeIII GTNAC 1 cut(s) 48
MalI GATC 4 cut(s) 556, 1221, 1363, 1905
MboI GATC 4 cut(s) 554, 1219, 1361, 1903
MfeI CAATTG 2 cut(s) 287, 1807
MflI RGATCY 2 cut(s) 1361, 1903
MhlI GDGCHC 1 cut(s) 1186
MlyI GAGTC 2 cut(s) 591, 1415
MmeI TCCRAC 5 cut(s) 235, 392, 570, 1014, 1722
Mph1103I ATGCAT 1 cut(s) 1169
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 4 cut(s) 57, 711, 1647, 1943
MslI CAYNNNNRTG 2 cut(s) 1371, 1485
MspI CCGG 1 cut(s) 602
MspR9I CCNGG 3 cut(s) 313, 602, 828
MunI CAATTG 2 cut(s) 287, 1807
Mva1269I GAATGC 2 cut(s) 982, 1169
MvaI CCWGG 2 cut(s) 313, 828
MwoI GCNNNNNNNGC 3 cut(s) 119, 649, 1651
NciI CCSGG 1 cut(s) 602
NdeI CATATG 2 cut(s) 1503, 1737
NdeII GATC 4 cut(s) 554, 1219, 1361, 1903
NlaIII CATG 4 cut(s) 610, 1226, 1583, 1714
NlaIV GGNNCC 1 cut(s) 972
NmuCI GTSAC 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 1169
NspI RCATGY 1 cut(s) 610
PagI TCATGA 1 cut(s) 1222
PcsI WCGNNNNNNNCGW 2 cut(s) 1302, 1311
PctI GAATGC 2 cut(s) 982, 1169
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 9 cut(s) 76, 142, 176, 262, 437, 694, 961, 1376, 1523
PflFI GACNNNGTC 1 cut(s) 657
PflMI CCANNNNNTGG 1 cut(s) 1928
PfoI TCCNGGA 1 cut(s) 600
PkrI GCNGC 7 cut(s) 235, 574, 577, 774, 777, 1623, 1816
PleI GAGTC 2 cut(s) 591, 1414
PpsI GAGTC 2 cut(s) 591, 1414
PshBI ATTAAT 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 311, 826
PspGI CCWGG 2 cut(s) 311, 826
PspN4I GGNNCC 1 cut(s) 972
PspPI GGNCC 2 cut(s) 970, 1957
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 2 cut(s) 1361, 1903
PsyI GACNNNGTC 1 cut(s) 657
RsaI GTAC 2 cut(s) 1399, 1879
RsaNI GTAC 2 cut(s) 1398, 1878
RseI CAYNNNNRTG 2 cut(s) 1371, 1485
SaqAI TTAA 4 cut(s) 57, 711, 1647, 1943
SatI GCNGC 7 cut(s) 234, 573, 576, 773, 776, 1622, 1815
Sau3AI GATC 4 cut(s) 554, 1219, 1361, 1903
Sau96I GGNCC 2 cut(s) 970, 1957
ScaI AGTACT 1 cut(s) 1399
SchI GAGTC 2 cut(s) 591, 1415
ScrFI CCNGG 3 cut(s) 313, 602, 828
SduI GDGCHC 1 cut(s) 1186
SexAI ACCWGGT 1 cut(s) 826
SfaNI GCATC 5 cut(s) 220, 729, 1140, 1237, 1633
SfcI CTRYAG 3 cut(s) 770, 1527, 1964
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 2 cut(s) 1371, 1485
SmlI CTYRAG 3 cut(s) 614, 1331, 1818
SmoI CTYRAG 3 cut(s) 614, 1331, 1818
SsiI CCGC 4 cut(s) 576, 846, 1003, 1536
SspI AATATT 1 cut(s) 518
SspMI CTAG 2 cut(s) 579, 903
StyD4I CCNGG 3 cut(s) 311, 600, 826
StyI CCWWGG 2 cut(s) 237, 792
TaaI ACNGT 3 cut(s) 38, 541, 675
TaiI ACGT 1 cut(s) 1214
TaqI TCGA 5 cut(s) 265, 697, 1041, 1314, 1891
TatI WGTACW 1 cut(s) 1397
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 9 cut(s) 76, 142, 176, 262, 437, 694, 961, 1376, 1523
Tru1I TTAA 4 cut(s) 57, 711, 1647, 1943
Tru9I TTAA 4 cut(s) 57, 711, 1647, 1943
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 6 cut(s) 233, 572, 772, 775, 1621, 1814
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 9 cut(s) 222, 434, 647, 780, 824, 830, 1158, 1596, 1686
TspGWI ACGGA 2 cut(s) 44, 1864
Tth111I GACNNNGTC 1 cut(s) 657
Van91I CCANNNNNTGG 1 cut(s) 1928
VpaK11BI GGWCC 1 cut(s) 970
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 4 cut(s) 477, 1031, 1105, 1564
XceI RCATGY 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 1530
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 2 cut(s) 579, 903
ZrmI AGTACT 1 cut(s) 1399
Zsp2I ATGCAT 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.